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Revision 17141  Directory Listing
Modified Thu Sep 21 01:43:15 2017 UTC (5 days, 19 hours ago) by lassoan
BUG: Fixed test error due to changed selection node

Selection node has now a activePlotChartID member.

Revision 17140  Directory Listing
Modified Fri Sep 8 17:17:24 2017 UTC (2 weeks, 4 days ago) by jcfr
COMP: Setting CMP0020 to NEW to remove build warnings

Revision 17139  Directory Listing
Modified Thu Sep 7 19:37:49 2017 UTC (2 weeks, 5 days ago) by hjohnson
ENH: Remove deprecated use of the register keyword

Slicer-bld/EMSegment/AMF/vtkMinHeap.h:235:5: warning: 'register' storage class specifier is deprecated and incompatible with C++1z
      [-Wdeprecated-register]
    register int  down;
    ^~~~~~~~~

Revision 17138  Directory Listing
Modified Thu Aug 31 22:13:45 2017 UTC (3 weeks, 4 days ago) by jcfr
COMP: Fix VTK8 python wrapping adding missing include dirs

Revision 17137  Directory Listing
Modified Wed Aug 16 07:34:52 2017 UTC (5 weeks, 6 days ago) by jcfr
BUG: Fix libpng warnings in console when loading images with Qt 5

This commit applies a fix identical to the one found in Slicer r24571 and authored
by Max Smolens. It eliminates the following libpng warning seen when loading certain
PNG images using libpng 1.6.x, which is included in Qt 5:

    libpng warning: iCCP: known incorrect sRGB profile

To fix the images I ran them through ImageMagick, which removes the incorrect
profiles, as suggested in [1]:

    convert image.png image.png

libpng 1.6.17 describes the warning in png.c line 2308:

    /* These profiles are known to have bad data that may cause
     * problems if they are used, therefore attempt to
     * discourage their use, skip the 'have_md5' warning below,
     * which is made irrelevant by this error.
     */

[1] http://stackoverflow.com/questions/22745076/libpng-warning-iccp-known-incorrect-srgb-profile

Co-authored-by: Max Smolens <max.smolens@kitware.com>

Revision 17136  Directory Listing
Modified Tue Aug 15 20:26:31 2017 UTC (6 weeks ago) by pieper
COMP: fixes gcc6 error see https://issues.slicer.org/view.php?id=4413

Revision 17135  Directory Listing
Modified Tue Aug 8 17:21:54 2017 UTC (7 weeks ago) by msmolens
COMP: Fix inconsistent-missing-override warnings

This commit fixes warnings like the following:

    Slicer-0-build/EMSegment/MRML/vtkMRMLEMSNode.h:27:8: warning: 'PrintSelf' overrides a member function but is not marked 'override' [-Winconsistent-missing-override]
      void PrintSelf(ostream& os, vtkIndent indent);
           ^
    Slicer-0/Libs/MRML/Core/vtkMRMLNode.h:144:8: note: overridden virtual function is here
      void PrintSelf(ostream& os, vtkIndent indent) VTK_OVERRIDE;
           ^

From: Hina Shah <hina.shah@kitware.com>


Revision 17134  Directory Listing
Modified Fri Aug 4 18:25:46 2017 UTC (7 weeks, 4 days ago) by jcfr
COMP: Fix warning removing explicit setting of CMake policy CMP0017.

Setting of CMP0017 to OLD is not needed.

This commit addresses the following warning reported when using CMake 3.9.0:



See https://github.com/Slicer/Slicer/pull/765

Revision 17133  Directory Listing
Modified Tue Jul 25 01:36:29 2017 UTC (2 months ago) by lassoan
COMP: Setting CMP0020 to NEW to remove build warnings

Revision 17132  Directory Listing
Modified Tue Jul 25 01:35:43 2017 UTC (2 months ago) by lassoan
ENH: Fixed IslandRemoval module category

It was "Filter", while the correct category name is "Filtering"

Revision 17131  Directory Listing
Modified Thu Jun 29 17:29:37 2017 UTC (2 months, 4 weeks ago) by msmolens
ENH: Call InitializeObjectBase() in New() methods

In VTK8 it's necessary for New() methods to call InitializeObjectBase() on the
new object for proper tracking with vtkDebugLeaks. The standard macros
(vtkStandardNewMacro, vtkObjectFactoryNewMacro) handle this. For those classes
that don't use the macros, add calls to InitializeObjectBase().

Continue to support earlier versions of VTK by wrapping calls to
InitializeObjectBase() in checks for the preprocessor define
VTK_HAS_INITIALIZE_OBJECT_BASE.

It's possible that many of these implementations could be simplified by using
the standard macros.

See also:
- https://github.com/Kitware/VTK/commit/e5c793dbdf87e838bb2b60c6a5905ced0e5548f9
- http://public.kitware.com/pipermail/vtk-developers/2016-September/034332.html

Revision 17130  Directory Listing
Modified Tue May 30 20:17:20 2017 UTC (3 months, 3 weeks ago) by lassoan
ENH: Use external iterators to traverse shared collections

Revision 17129  Directory Listing
Modified Sat May 6 04:48:04 2017 UTC (4 months, 3 weeks ago) by jcfr
COMP: vtkLevelSets: Removed variable to fix unused-but-set-variable warning

Revision 17128  Directory Listing
Modified Sat May 6 04:43:27 2017 UTC (4 months, 3 weeks ago) by jcfr
BUG: vtkLevelSets: Fix logic error in vtkLevelSets::CheckConvergence

This commit fixes logic error reported as "-Wextra" warning. It
integrates fix similar to r17108 that was specific to vtkImageLevelSets.h

8<---8<---8<---8<---8<---8<---8<---8<---8<---8<---
/path/to/EMSegment/AMF/vtkLevelSets.cxx: In member function ‘unsigned char vtkLevelSets::CheckConvergence()’:
/path/to/EMSegment/AMF/vtkLevelSets.cxx:1279:24: warning: ordered comparison of pointer with integer zero [-Wextra]
      if (this->u[p] <= 0) total++;
                        ^
/path/to/EMSegment/AMF/vtkLevelSets.cxx:1284:65: warning: ordered comparison of pointer with integer zero [-Wextra]
      if ((this->stored_seg[p] == ON_STORED)    && (this->u[p] > 0))
                                                                 ^
/path/to/EMSegment/AMF/vtkLevelSets.cxx:1287:66: warning: ordered comparison of pointer with integer zero [-Wextra]
        if ((this->stored_seg[p] == OFF_STORED) && (this->u[p] <= 0))
                                                                  ^
/path/to/EMSegment/AMF/vtkLevelSets.cxx:1291:24: warning: ordered comparison of pointer with integer zero [-Wextra]
      if (this->u[p] <= 0)   
                        ^
8<---8<---8<---8<---8<---8<---8<---8<---8<---8<---

Revision 17127  Directory Listing
Modified Tue Apr 25 04:56:13 2017 UTC (5 months ago) by lassoan
BUG: Fixed test failures

Caused by removing extra spaces in MRML scene files.

Revision 17126  Directory Listing
Modified Sun Mar 12 18:33:29 2017 UTC (6 months, 2 weeks ago) by jcfr
COMP: vtkMRMLEMSVolumeCollectionNode: Fix -Winfinite-recursion warning

Revision 17125  Directory Listing
Modified Sat Mar 11 23:18:35 2017 UTC (6 months, 2 weeks ago) by jcfr
STYLE: vtkEMSegmentLogic: Fix -Wabsolute-value warning using std::abs

Revision 17124  Directory Listing
Modified Tue Jan 17 12:58:32 2017 UTC (8 months, 1 week ago) by jcfr
ENH: Add support for Qt5

Revision 17123  Directory Listing
Modified Tue Aug 16 20:43:57 2016 UTC (13 months, 1 week ago) by jcfr
STYLE: Improve IDE experience associating targets with folder
 
 Additionally, it also applies the following changes:
 * Use slicerMacroBuildLoadableModule instead of slicerMacroBuildQtModule
 * Start transitioning to lowercase CMake command names

Revision 17122  Directory Listing
Modified Thu Aug 11 17:25:49 2016 UTC (13 months, 2 weeks ago) by johan.andruejol
COMP: Include SlicerExecution_USE_FILE

Revision 17121  Directory Listing
Modified Fri Jun 17 02:28:49 2016 UTC (15 months, 1 week ago) by jcfr
BUG: Fix import of python modules.

This commit fixes a regression introduced in r17117 (ENH: Simplify import
of Logic/MRML/DisplayableManager python modules). It ensures python modules
built on system using intermediate directories (e.g Visual Studio) can 
be imported.

Revision 17120  Directory Listing
Modified Wed Jun 15 18:53:43 2016 UTC (15 months, 1 week ago) by msmolens
COMP: Fix Python wrapping with VTK 7.1

When Slicer is built with the VTK 7.1, Python wrapping failed with errors
similar to:

    C:\path\to\Slicer-build\Modules\Remote\EMSegment\Qt\Logic\vtkTimeDefPython.cxx(73): error C2440: 'return' : cannot convert from 'vtkTimeDef *' to 'vtkObjectBase *'
              Types pointed to are unrelated; conversion requires reinterpret_cast, C-style cast or function-style cast
    C:\path\to\Slicer-build\Modules\Remote\EMSegment\Qt\Logic\EMLocalShapeCostFunctionPython.cxx(24): error C2440: 'static_cast' : cannot convert from 'vtkObjectBase *' to 'EMLocalShapeCostFunction *'
              Types pointed to are unrelated; conversion requires reinterpret_cast, C-style cast or function-style cast

This happens because VTK wrapping no longer recognizes BTX/ETX markers as
indicators to skip wrapping of a block of code; see Kitware/VTK@55878a2. In many
cases the updated wrapping tools can handle code that was previously had to be
skipped, but in this case wrapping still fails.

In VTK 7.1 blocks of code can be skipped for wrapping by checking whether
__VTK_WRAP__ is defined.


Revision 17119  Directory Listing
Modified Mon Jun 13 19:13:49 2016 UTC (15 months, 1 week ago) by msmolens
COMP: Fix compilation with VTK 7.1

When Slicer is built with the current VTK master (upcoming VTK 7.1), compilation
fails because of several deprecated headers and methods. This commit fixes
compilation with VTK 7.1 by updating the usage of the deprecated headers and
methods. Compatibility with the current version of VTK that Slicer uses is
maintained.

Specific changes accounted for include:

- Kitware/VTK@d9c5ca0
  (Mark legacy methods as "legacy".)

- Kitware/VTK@3ae7dd3
  (ENH: Remove use of include <vtksys/ios/*> and vtksys_ios::*)

- Kitware/VTK@eaf0f6a
  (ENH: Remove use of include <vtksys/stl/*> and vtksys_stl::*)

Revision 17118  Directory Listing
Modified Mon Jun 13 04:23:40 2016 UTC (15 months, 2 weeks ago) by jcfr
STYLE: vtkEMSegmentMRMLManager: Fix 'Tag has already been registered' warning

Revision 17117  Directory Listing
Modified Tue May 31 07:42:13 2016 UTC (15 months, 3 weeks ago) by jcfr
ENH: Simplify import of Logic/MRML/DisplayableManager python modules

This commit updates vtkSlicerCommonInterface::Startup method to comply with
changes introduced in Slicer r25128

Revision 17116  Directory Listing
Modified Wed May 25 19:09:21 2016 UTC (16 months ago) by jcfr
STYLE: Reference python wrapped object from 'slicer' namespace

Revision 17115  Directory Listing
Modified Mon Nov 30 19:57:27 2015 UTC (21 months, 3 weeks ago) by lassoan
ENH: Updated test baseline corresponding to Slicer core changes

Required by Table node support added in rev 24783

Revision 17114  Directory Listing
Modified Wed Nov 25 06:27:12 2015 UTC (22 months ago) by jcfr
STYLE: Fix CMake warning setting CMP0048 to NEW

This commit will avoid the following warning:

//-----------------------------------------
  Policy CMP0048 is not set: project() command manages VERSION variables.
  Run "cmake --help-policy CMP0048" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The following variable(s) would be set to empty:

    PROJECT_VERSION
    PROJECT_VERSION_MAJOR
    PROJECT_VERSION_MINOR
    PROJECT_VERSION_PATCH
//-----------------------------------------

Revision 17113  Directory Listing
Modified Thu Nov 12 00:04:08 2015 UTC (22 months, 2 weeks ago) by pohl
BUG: Slicer4-EMSegment -  In EMSegmentCommandLine loadAtlasNonCentered did not change value for some reason - so renamed it and now it works as expected 

Revision 17112  Directory Listing
Modified Tue Nov 10 21:39:56 2015 UTC (22 months, 2 weeks ago) by pohl
ENH: added vtkImageClipAutomatic to Slicer4-EMSegment and included functionality in EMSegmentCommandLine

Revision 17111  Directory Listing
Modified Mon Nov 9 17:39:56 2015 UTC (22 months, 2 weeks ago) by pohl
BUG: Could not load atlas in command line without it being centered

Revision 17109  Directory Listing
Modified Mon Nov 2 17:05:48 2015 UTC (22 months, 3 weeks ago) by pohl
BUG: Removed variables to surpress another warning message when compiling

Revision 17108  Directory Listing
Modified Sun Nov 1 14:50:57 2015 UTC (22 months, 3 weeks ago) by pohl
BUG: if condition was always true due to missing * and moved variable definition to avoid warning

Revision 17107  Directory Listing
Modified Tue Oct 6 20:45:14 2015 UTC (23 months, 3 weeks ago) by naucoin
BUG: update test MRML to include singletonTag

As of Slicer4 svn 24582 the vtkMRMLNode is writing
out the singleton tag to MRML. Update this testing
MRML file to include it so that the test EMSeg_MRML_DiffReadWriteNodes
will pass when comparing the baseline mrml file to the
written one.

Issue #4006


Revision 17106  Directory Listing
Modified Tue Sep 1 17:15:40 2015 UTC (2 years ago) by hjohnson
COMP: Provde C++11 compatible syntax

EMSegment/CommandLineApplication/EMSegmentAPIHelper.h:112:21: error:
invalid suffix on literal; C++11 requires a space between literal and identifier [-Wreserved-user-defined-literal]

  cout << "Setting "Slicer_HOME_ENVVAR_NAME" ..." << endl;


A space between concatenated string literals is required.



Revision 17105  Directory Listing
Modified Mon Aug 3 21:20:32 2015 UTC (2 years, 1 month ago) by jcfr
COMP: Fix some compilation errors in Visual Studio 2013

Contributed-by: Max Smolens <max.smolens@kitware.com>

Revision 17104  Directory Listing
Modified Fri Jun 5 13:21:15 2015 UTC (2 years, 3 months ago) by lassoan
BUG: Fixed  EMSegCL_Task_MRIHumanBrainFullParcellation_BRAINS_small test

Fixes error

itk::ImageFileWriterException (00000000002C51D0)
Location: "unknown" 
File: c:\d\n\slicer-1-build\itkv4\modules\io\imagebase\include\itkImageFileWriter.hxx
Line: 151
Description:  Could not create IO object for writing file C:/Users/kitware/AppData/Local/Temp/TempWriteEMS20056a03544_vtkMRMLScalarVolumeNode5/EMS20056a03544_vtkMRMLScalarVolumeNode5.h5
  Tried to create one of the following:
    NiftiImageIO
    NrrdImageIO
    GiplImageIO
    JPEGImageIO
    GDCMImageIO
    BMPImageIO
    LSMImageIO
    PNGImageIO
    TIFFImageIO
    VTKImageIO
    StimulateImageIO
    BioRadImageIO
    MetaImageIO
    MRCImageIO
    MGHImageIO
    MRMLIDImageIO

Revision 17103  Directory Listing
Modified Fri Jun 5 00:51:49 2015 UTC (2 years, 3 months ago) by jcfr
BUG: Fix unused variable warning fix regression introduced in previous commit.

Update AddNewScalarArchetypeVolume function to create either a scalar volume node
or a labelmap volume node.

Revision 17102  Directory Listing
Modified Thu Jun 4 19:16:09 2015 UTC (2 years, 3 months ago) by lassoan
COMP: Made EMSegment use vtkMRMLLabelMapVolumeNode

Revision 17101  Directory Listing
Modified Fri May 29 18:53:23 2015 UTC (2 years, 3 months ago) by lassoan
ENH: Merged EMSegment developments from EMSegment trunk

Revision 17100  Directory Listing
Modified Fri May 1 01:16:03 2015 UTC (2 years, 4 months ago) by pohl
ENH: Added Wrapper for Automatic Island Removal

Revision 17099  Directory Listing
Modified Sat Apr 25 21:32:17 2015 UTC (2 years, 5 months ago) by pohl
STYLE: Changed output to make it easier readable

Revision 17098  Directory Listing
Modified Sat Apr 25 21:31:35 2015 UTC (2 years, 5 months ago) by pohl
BUG: took out class 10 as the structure shown inside the probability atlas was very thin and so produce problems during testing - auto-sample failed

Revision 17097  Directory Listing
Modified Sat Apr 11 19:28:57 2015 UTC (2 years, 5 months ago) by jcfr
COMP: Merged from trunk

Revision 17096  Directory Listing
Modified Wed Apr 8 02:15:31 2015 UTC (2 years, 5 months ago) by pohl
PERF: Made slow mode of CMTK registration more accurate

Revision 17095  Directory Listing
Modified Tue Mar 10 04:46:54 2015 UTC (2 years, 6 months ago) by jcfr
BUG: Fix EMSeg_MRML_DiffReadWriteNodes test

Add missing attribute 'placeModePersistence' into mrml scene used for the Tutorial tests

Revision 17094  Directory Listing
Modified Fri Feb 27 19:36:34 2015 UTC (2 years, 6 months ago) by lassoan
COMP: Merged from trunk

Revision 17093  Directory Listing
Modified Fri Jan 9 17:17:37 2015 UTC (2 years, 8 months ago) by jcfr
BUG: Remove invalid BRAINSFit argument

This commit removes deprecated (and unused for a long time) command line options
from the most recent version of BRAINSTools. These command line options have
been NO-OP operations for a long time. They have been removed in the version
of BRAINSTools now used in Slicer r23872.

Thanks to "Hans Johnson <hans-johnson@uiowa.edu>" for providing the patch.

Revision 17092  Directory Listing
Modified Fri Jan 9 06:40:30 2015 UTC (2 years, 8 months ago) by jcfr
ENH: Remove dependency on ITKv3Compatibility module.

Thanks to "Bradley Lowekamp <blowekamp@mail.nih.gov>" for providing the patch.

See http://itk.org/migrationv4/index.php?action=artikel&cat=3&id=143&artlang=en for
more details

Revision 17091  Directory Listing
Modified Wed Dec 3 19:53:04 2014 UTC (2 years, 9 months ago) by lassoan
ENH: Made EMSegment use vtkMRMLLabelMapVolumeNode

Revision 17090  Directory Listing
Modified Wed Dec 3 19:28:50 2014 UTC (2 years, 9 months ago) by lassoan
COMP: New branch for EMSegment that uses vtkMRMLLabelMapVolumeNode

See more details about this development here:
https://www.assembla.com/spaces/slicerrt/wiki/Segmentation

Revision 17089  Directory Listing
Modified Mon Oct 20 23:22:11 2014 UTC (2 years, 11 months ago) by pohl
STYLE: change BRAINSFIT setting to accomodate new version

Revision 17088  Directory Listing
Modified Fri Oct 17 20:07:29 2014 UTC (2 years, 11 months ago) by pohl
BUG: #3561 did not check if index < 0, which causes crashes

Revision 17087  Directory Listing
Modified Mon Oct 13 22:52:16 2014 UTC (2 years, 11 months ago) by pohl
BUG: tcl file was not updated to VTK6

Revision 17086  Directory Listing
Modified Thu Sep 25 19:39:45 2014 UTC (3 years ago) by jcfr
ENH: Explicitly call find_package(ITK ...) specifying components

Revision 17085  Directory Listing
Modified Thu Sep 18 08:43:26 2014 UTC (3 years ago) by jcfr
BUG: Do not display warnings when setting null scene

Revision 17084  Directory Listing
Modified Tue Sep 16 03:15:09 2014 UTC (3 years ago) by jcfr
BUG: Fix test EMSeg_SlicerCommonInterfaceTestGeneral on windows

This commit ensures the ITK IO factory are registered.

Revision 17083  Directory Listing
Modified Wed Sep 3 17:40:47 2014 UTC (3 years ago) by pohl
BUG: disabled calcDFVolumeNode as it calls a BRAINS function that does not work

Revision 17082  Directory Listing
Modified Mon Sep 1 21:47:19 2014 UTC (3 years ago) by pohl
BUG: Tests failed bc BRAINS non-rigid registration took too long - set --costFunctionConvergenceFactor to 5e+13 for test case

Revision 17081  Directory Listing
Modified Mon Sep 1 21:42:40 2014 UTC (3 years ago) by pohl
BUG: EMSegmenter failed if the auto sampling of covariance matrix resulted in 0 entries in the diagonal

Revision 17080  Directory Listing
Modified Mon Sep 1 21:35:24 2014 UTC (3 years ago) by pohl
STYLE: Add info to error message to simplify tracing down the issue

Revision 17079  Directory Listing
Modified Mon Sep 1 21:34:25 2014 UTC (3 years ago) by pohl
ENH: Changed one of the Tests so that they only perform affine registration - before all registration tests performed affine and non-rigid together

Revision 17078  Directory Listing
Modified Mon Sep 1 21:30:10 2014 UTC (3 years ago) by pohl
STYLE: Fixed naming convention for atlases that are loaded in through api instead of mrml. Used to be named after path and file name now only includes file name

Revision 17077  Directory Listing
Modified Sat Aug 30 00:50:26 2014 UTC (3 years ago) by pohl
BUG: Integrated BRAINSTransformConvert as original cmd did not work with BRAINS anymore

Revision 17076  Directory Listing
Modified Sat Aug 16 02:43:09 2014 UTC (3 years, 1 month ago) by pohl
BUG: Script exited with error when writting out intermediate results with tasks that included subparcellation

Revision 17075  Directory Listing
Modified Sat Aug 16 02:41:49 2014 UTC (3 years, 1 month ago) by pohl
BUG: Full Filename was used as volume name

Revision 17074  Directory Listing
Modified Tue Jul 29 23:07:19 2014 UTC (3 years, 1 month ago) by pohl
BUG: BRAINS can only now read in h5 files

Revision 17073  Directory Listing
Modified Fri Jul 25 23:06:27 2014 UTC (3 years, 2 months ago) by pohl
BUG: cli-modules were not included in PATH of installed version of MAC 

Revision 17072  Directory Listing
Modified Fri Jul 25 21:27:20 2014 UTC (3 years, 2 months ago) by pohl
BUG: Fixed error with intensity sampling

Revision 17071  Directory Listing
Modified Fri Jul 25 20:17:10 2014 UTC (3 years, 2 months ago) by pohl
STYLE: Removed KWWidgets as it is not part of Slicer 4

Revision 17070  Directory Listing
Modified Mon Jul 14 16:53:30 2014 UTC (3 years, 2 months ago) by pohl
BUG: Task directory got copied over everytime running emsegmenter which can cause issues when running multiple instances of the EMSegmenter - fixed now - only copying when time stamp of source directory newer then tmp dir

Revision 17069  Directory Listing
Modified Thu Jul 10 03:47:31 2014 UTC (3 years, 2 months ago) by pohl
BUG: Extesions did not look in right directory - in addition CMTK could pass even if CMTK was not installed as EMSegmenter automatically switches to Brains

Revision 17068  Directory Listing
Modified Wed Jul 9 20:36:51 2014 UTC (3 years, 2 months ago) by pohl
BUG: Just checking inconsistency between machines

Revision 17067  Directory Listing
Modified Tue Jul 8 16:36:23 2014 UTC (3 years, 2 months ago) by pohl
BUG: depreciated flag of BRAINS was changed

Revision 17066  Directory Listing
Modified Tue Jun 24 15:28:13 2014 UTC (3 years, 3 months ago) by finetjul
BUG: Fix VTK6 support for vtkImageIslandFilter

Closes #3746


Revision 17065  Directory Listing
Modified Mon Jun 23 17:56:47 2014 UTC (3 years, 3 months ago) by pohl
BUG: Added Test 6 to expose crash of vtkImageIslandFilter due to VTK6 transition

Revision 17064  Directory Listing
Modified Mon Jun 23 17:54:49 2014 UTC (3 years, 3 months ago) by pohl
STYLE:  modified info text to take the word error out

Revision 17063  Directory Listing
Modified Mon Jun 23 17:53:31 2014 UTC (3 years, 3 months ago) by pohl
BUG: Input to vtkImageCast was not correctly set up for VTK6

Revision 17062  Directory Listing
Modified Mon Jun 23 16:34:35 2014 UTC (3 years, 3 months ago) by finetjul
BUG: Remove vtkImageLabelPropagation::AllocateOutputScalars...

...declaration for VTKv6.
The implementation has been removed in the previous commit.


Revision 17061  Directory Listing
Modified Mon Jun 23 15:32:15 2014 UTC (3 years, 3 months ago) by finetjul
BUG: Fix VTK6 support for vtkImageLabelPropagation.cxx

See www.vtk.org/Bug/view.php?id=14818


Revision 17060  Directory Listing
Modified Thu Jun 19 20:11:06 2014 UTC (3 years, 3 months ago) by pohl
BUG: Fixed bug with respect to Image inhomogeneity; included vtkImageLabelPropagation in SlicerCommonInterFaceTest1 so it would fail as this is also the reason for EMSegCL_Task_MRIHumanBrainFullParcellation_BRAINS_small failing

Revision 17059  Directory Listing
Modified Thu Jun 19 18:55:35 2014 UTC (3 years, 3 months ago) by pohl
BUG: Now provides error message if it cannot find path to API

Revision 17058  Directory Listing
Modified Wed Jun 18 13:47:30 2014 UTC (3 years, 3 months ago) by jcfr
COMP: Fix compilation against VTKv6.

This commits fixes build error introduced by r17053.

Few tests are still failing due to memory leaks and will
be fixed at a later time:
* EMSegCL_Task_MRIHumanBrain_BRAINS_small
* EMSegCL_Task_MRIHumanBrainFullParcellation_BRAINS_small

Revision 17057  Directory Listing
Modified Tue Jun 17 17:58:42 2014 UTC (3 years, 3 months ago) by pohl
BUG: Replaced outdated sliceWidgetRed_interactorStyle slicer.sliceWidgetRed_sliceLogic

Revision 17056  Directory Listing
Modified Tue Jun 17 16:20:30 2014 UTC (3 years, 3 months ago) by pohl
BUG: Test failed as MRML node now also include version number in mrml file 

Revision 17055  Directory Listing
Modified Mon Jun 16 23:02:03 2014 UTC (3 years, 3 months ago) by pohl
BUG: data() is not part of std::vector on windows compilers

Revision 17054  Directory Listing
Modified Fri Jun 13 02:15:34 2014 UTC (3 years, 3 months ago) by pohl
BUG: vtkSlicerCommonInterface did not define the right plugin path to plugins when EMSEgmenter was run by installed package

Revision 17053  Directory Listing
Modified Wed Jun 11 21:41:53 2014 UTC (3 years, 3 months ago) by pohl
BUG: N4ITK changes the image range which can cause problems for images of scalar type short if they fall outside the range

Revision 17052  Directory Listing
Modified Sat Jun 7 01:29:01 2014 UTC (3 years, 3 months ago) by jcfr
COMP: Avoid implicit narrowing casts

Explicitly cast initializers in {} array initializer where the assigned type is smaller than the value type. This avoids implicit narrowing in a {} initializer, which is ill-formed in C++11.

Revision 17051  Directory Listing
Modified Sat Jun 7 01:21:39 2014 UTC (3 years, 3 months ago) by jcfr
COMP: Remove gratuitous virtual

Remove 'virtual' specifier of private class in source file, where said class is not and (due to being in a source file) never will be derived. This avoids needing an explicit (virtual) dtor in order to avoid a -Wnon-virtual-dtor warning.

Revision 17050  Directory Listing
Modified Mon May 19 19:03:57 2014 UTC (3 years, 4 months ago) by pohl
BUG: I expanded vtkSlicerCommonInterfaceTest1.cxx to expose a bug currently causing all EMSegmenter Commmand Line Tests to fail 

Revision 17049  Directory Listing
Modified Mon May 19 18:47:04 2014 UTC (3 years, 4 months ago) by pohl
BUG: I expanded vtkSlicerCommonInterfaceTest1.cxx to expose a bug currently causing all EMSegmenter Commmand Line Tests to fail 

Revision 17048  Directory Listing
Modified Tue May 13 03:41:06 2014 UTC (3 years, 4 months ago) by jcfr
COMP: Simplify MRML Scene API removing "Edited()" method. Fixes #3472

Revision 17047  Directory Listing
Modified Thu May 8 03:35:59 2014 UTC (3 years, 4 months ago) by jcfr
COMP: Fix unused variable and typdef warnings

Revision 17046  Directory Listing
Modified Wed May 7 17:43:32 2014 UTC (3 years, 4 months ago) by finetjul
COMP: Fix python wrapping for VTK6

Add vtkEMSegment.h to python include dirs

Revision 17045  Directory Listing
Modified Thu May 1 19:44:32 2014 UTC (3 years, 4 months ago) by finetjul
ENH: Add VTK 6 support

Revision 17044  Directory Listing
Modified Tue Apr 8 17:37:53 2014 UTC (3 years, 5 months ago) by jcfr
ENH: Do not install test data

As discussed with Kilian on Feb 18 2014, there is no reason to install
the test data

Revision 17043  Directory Listing
Modified Tue Apr 8 17:35:28 2014 UTC (3 years, 5 months ago) by jcfr
ENH: Associate component with task install rules

Revision 17042  Directory Listing
Modified Wed Dec 4 19:51:53 2013 UTC (3 years, 9 months ago) by jcfr
COMP: Create Slicer4-EMSegment branch for current development.

Following discussion with Kilian Pohl, we agreed on creating
a dedicated branch to support the update of the module so that
it build and run against Slicer4.

It means that code pushed on [1] is expected for maintainance
of the EMSegment so that it build and run against Slicer3.

On the other hand, code pushed on [2] is non expected to be
backward compatible with Slicer3 and is done to ensure that
EMSegment build and run against Slicer4.

[1] http://svn.slicer.org/Slicer3/trunk/Modules/EMSegment
[2] http://svn.slicer.org/Slicer3/branches/Slicer4-EMSegment


For reference, the following command was used:

svn copy http://svn.slicer.org/Slicer3/trunk/Modules/EMSegment \
  http://svn.slicer.org/Slicer3/branches/Slicer4-EMSegment

Revision 17041  Directory Listing
Modified Wed Dec 4 19:26:08 2013 UTC (3 years, 9 months ago) by jcfr
STYLE: Removing obsolete branch of Slicer3 project.

Development of Slicer4 is done in the corresponding project.
See http://svn.slicer.org/Slicer4

Revision 16921  Directory Listing
Modified Fri Nov 25 22:43:05 2011 UTC (5 years, 10 months ago) by fedorov
BUG: fix typo

Revision 16920  Directory Listing
Modified Fri Nov 25 20:33:30 2011 UTC (5 years, 10 months ago) by fedorov
STYLE: add exception checks

Revision 16899  Directory Listing
Modified Wed Nov 2 15:14:57 2011 UTC (5 years, 10 months ago) by lchauvin
ENH: Add Load/Save Attribute mechanism (backport from Slicer4)

Revision 16846  Directory Listing
Modified Tue Sep 27 16:41:59 2011 UTC (6 years ago) by pieper
BUG: fix issue finding dicom data dictionary on systems with extra lib subdirectory (i.e. solaris has an amd64 subdir for itk installation)

Revision 16845  Directory Listing
Modified Thu Sep 22 17:39:03 2011 UTC (6 years ago) by pieper
ENH: merge from trunk (fixes for Surface Toolbox)

Revision 16840  Directory Listing
Modified Sun Sep 11 20:47:15 2011 UTC (6 years ago) by fedorov
ENH: acknowledge P.Black as a PI

Revision 16834  Directory Listing
Modified Tue Sep 6 23:01:20 2011 UTC (6 years ago) by pieper
COMP: use svn mirror of numpy (newer version) to work around problems with svn.scipy.org now being a git repository

Revision 16764  Directory Listing
Modified Mon Jul 25 18:59:49 2011 UTC (6 years, 2 months ago) by domibel
STYLE: fixed typo

Revision 16752  Directory Listing
Modified Wed Jul 13 20:35:00 2011 UTC (6 years, 2 months ago) by pieper
BUG: avoid slowdown due to accumulated observers when using the editor - do not lock fiducials while editing

Revision 16751  Directory Listing
Modified Wed Jul 13 20:34:22 2011 UTC (6 years, 2 months ago) by pieper
BUG: fix issue where label map opacity slicer goes away just when you are trying to use it.  Now user must expliticly dismiss the window, but the advantage is that you can interact for a while without picking the menu again

Revision 16733  Directory Listing
Modified Thu Jul 7 13:32:02 2011 UTC (6 years, 2 months ago) by pieper
ENH: merge from trunk: adjust slice plane widget based on volume location

Revision 16725  Directory Listing
Modified Mon Jul 4 17:29:56 2011 UTC (6 years, 2 months ago) by pieper
BUG: merge from trunk (fix for model/slice visibility after scene load

Revision 16724  Directory Listing
Modified Mon Jul 4 17:29:15 2011 UTC (6 years, 2 months ago) by pieper
ENH: remove unused extension file

Revision 16720  Directory Listing
Modified Fri Jul 1 15:24:01 2011 UTC (6 years, 2 months ago) by alexy
BUG_FIXED: http://www.na-mic.org/Bug/view.php?id=1233
Use full file extension instead of last

Revision 16719  Directory Listing
Modified Fri Jul 1 14:27:31 2011 UTC (6 years, 2 months ago) by alexy
BUG_FIXED: http://www.na-mic.org/Mantis/view.php?id=1225
clear unique names list on scene close

Revision 16687  Directory Listing
Modified Mon Jun 13 13:23:44 2011 UTC (6 years, 3 months ago) by domibel
ENH: Add comments about how to use git

Revision 16674  Directory Listing
Modified Mon Jun 6 20:40:12 2011 UTC (6 years, 3 months ago) by tokuda
BUG: fixing memory leaks

Revision 16673  Directory Listing
Modified Mon Jun 6 18:10:43 2011 UTC (6 years, 3 months ago) by tokuda
ENH: merging updates in trunk/Modules/OpenIGTLinkIF

Revision 16672  Directory Listing
Modified Mon Jun 6 16:13:04 2011 UTC (6 years, 3 months ago) by tokuda
ENH: creating a branch for workshop at Robarts

Revision 16659  Directory Listing
Modified Fri May 27 18:11:34 2011 UTC (6 years, 4 months ago) by pieper
BUG: fix special case of pure sagittal slice in calculating screen space radius (merge from trunk)

Revision 16657  Directory Listing
Modified Fri May 27 17:11:34 2011 UTC (6 years, 4 months ago) by francois_budin
ENH:add SPHARM-PDM as an extension

Revision 16640  Directory Listing
Modified Sat May 21 02:33:30 2011 UTC (6 years, 4 months ago) by haehn
ENH: Merged AtlasCreator from Trunk.

Revision 16634  Directory Listing
Modified Thu May 19 15:20:24 2011 UTC (6 years, 4 months ago) by domibel
ENH: Changed CSF label to 18

Revision 16631  Directory Listing
Modified Wed May 18 18:56:40 2011 UTC (6 years, 4 months ago) by domibel
ENH: Merge from trunk

Revision 16622  Directory Listing
Modified Sun May 15 11:49:19 2011 UTC (6 years, 4 months ago) by haehn
COMP: Only use Python libraries in EMSegment if Python is activated.

Revision 16616  Directory Listing
Modified Thu May 12 19:51:07 2011 UTC (6 years, 4 months ago) by domibel
ENH: Merge from trunk

Revision 16615  Directory Listing
Modified Thu May 12 19:26:16 2011 UTC (6 years, 4 months ago) by domibel
ENH: Merge from trunk

Revision 16614  Directory Listing
Modified Thu May 12 18:31:02 2011 UTC (6 years, 4 months ago) by haehn
ENH: Merge testing macros from Trunk.

Revision 16613  Directory Listing
Modified Thu May 12 18:01:38 2011 UTC (6 years, 4 months ago) by domibel
ENH: Merge from trunk

Revision 16612  Directory Listing
Modified Thu May 12 17:46:18 2011 UTC (6 years, 4 months ago) by haehn
ENH: Merge AtlasCreator from branch.


Revision 16611  Directory Listing
Modified Thu May 12 17:44:53 2011 UTC (6 years, 4 months ago) by haehn
ENH: Purge old AtlasCreator.

Revision 16610  Directory Listing
Modified Thu May 12 14:44:00 2011 UTC (6 years, 4 months ago) by domibel
ENH: Merge from trunk

Revision 16592  Directory Listing
Modified Tue May 10 01:36:23 2011 UTC (6 years, 4 months ago) by domibel
BUG: Include <stddef.h> to ensure ptrdiff_t is defined

Revision 16582  Directory Listing
Modified Fri May 6 17:46:38 2011 UTC (6 years, 4 months ago) by pieper
COMP: rename extension file to match cmake project file so extension builds will work on windows

Revision 16508  Directory Listing
Modified Wed Apr 27 21:48:28 2011 UTC (6 years, 5 months ago) by haehn
BUG: AtlasCreator: Disable Windows tests for now. Windows is currently not supported.

Revision 16495  Directory Listing
Modified Tue Apr 26 14:45:41 2011 UTC (6 years, 5 months ago) by naucoin
BUG: remove outdated references to qdec library

Revision 16478  Directory Listing
Modified Fri Apr 22 12:18:16 2011 UTC (6 years, 5 months ago) by pieper
BUG: fix for bug 1132 about linked slices in reformat mode

Revision 16463  Directory Listing
Modified Wed Apr 20 18:02:23 2011 UTC (6 years, 5 months ago) by pieper
ENH: merge fix from trunk for thresholding beyond min/max range of volume and catch when trying to apply polyline with no points

Revision 16461  Directory Listing
Modified Wed Apr 20 18:01:12 2011 UTC (6 years, 5 months ago) by pieper
ENH: merge fix from trunk for thresholding beyond min/max range of volume

Revision 16459  Directory Listing
Modified Wed Apr 20 17:58:48 2011 UTC (6 years, 5 months ago) by pieper
BUG: fix leaks (unfreed widgets)

Revision 16458  Directory Listing
Modified Wed Apr 20 17:45:55 2011 UTC (6 years, 5 months ago) by pieper
ENH: merge fixes from the trunk

Revision 16453  Directory Listing
Modified Tue Apr 19 22:25:58 2011 UTC (6 years, 5 months ago) by pieper
ENH: migrate from trunk: revive Probe Volume with Model module along with fix to make scalars appear correctly

Revision 16436  Directory Listing
Modified Mon Apr 18 20:27:11 2011 UTC (6 years, 5 months ago) by taox
BUG: Fixed Siemens tag parsing problem. Skip tag strings that are part of a comment.

Revision 16423  Directory Listing
Modified Sat Apr 16 00:18:17 2011 UTC (6 years, 5 months ago) by haehn
COMP: AtlasCreator: Fix test until new TestingMacros.h are being merged from the trunk.

Revision 16420  Directory Listing
Modified Fri Apr 15 18:43:59 2011 UTC (6 years, 5 months ago) by haehn
ENH: New AtlasCreator. Merge from Trunk.

Revision 16419  Directory Listing
Modified Fri Apr 15 18:41:51 2011 UTC (6 years, 5 months ago) by haehn
ENH: Purge old AtlasCreator before upgrading to the latest version.

Revision 16418  Directory Listing
Modified Fri Apr 15 18:41:07 2011 UTC (6 years, 5 months ago) by haehn
ENH: Enable check for USE_NUMPY variable before including NUMPY in the build. Merge from Trunk.

Revision 16417  Directory Listing
Modified Fri Apr 15 18:32:17 2011 UTC (6 years, 5 months ago) by haehn
ENH: Enable listening to MRMLScene and MRMLNode events in Python Scripted Modules. Change the Invoke() functionality to support multiple (up to 6) arguments. Merge from Trunk.

Revision 16416  Directory Listing
Modified Fri Apr 15 18:10:13 2011 UTC (6 years, 5 months ago) by haehn
ENH: Exit correctly after --evalpython calls. Merge from Trunk.

Revision 16393  Directory Listing
Modified Wed Apr 13 20:57:22 2011 UTC (6 years, 5 months ago) by harveerar
BUG: crashing slicer after finishing grow cut for some specific examples fixed

Revision 16392  Directory Listing
Modified Wed Apr 13 20:57:18 2011 UTC (6 years, 5 months ago) by harveerar
BUG: crashing slicer after finishing grow cut for some specific examples fixed

Revision 16372  Directory Listing
Modified Mon Apr 11 13:19:10 2011 UTC (6 years, 5 months ago) by pieper
STYLE: fix button width

Revision 16369  Directory Listing
Modified Fri Apr 8 23:12:46 2011 UTC (6 years, 5 months ago) by fedorov
ENH: merging performance tests developed by Steve from trunk

Revision 16368  Directory Listing
Modified Fri Apr 8 22:31:16 2011 UTC (6 years, 5 months ago) by pieper
BUG: fixes for various issues related to bug 1117 (migration of fixes from trunk)

Revision 16287  Directory Listing
Modified Fri Apr 1 22:28:11 2011 UTC (6 years, 5 months ago) by naucoin
BUG: porting fix for bug 1117 from the trunk, svn revision 16186

Revision 16261  Directory Listing
Modified Tue Mar 29 18:14:04 2011 UTC (6 years, 6 months ago) by mscully
BUG: Sylvain's DicomToNrrdConverter scaleFactor fix

Revision 16249  Directory Listing
Modified Thu Mar 24 15:31:12 2011 UTC (6 years, 6 months ago) by demian
ENH: Added GTRACT to the slicer 3-6 distribution

Revision 16238  Directory Listing
Modified Wed Mar 23 16:26:17 2011 UTC (6 years, 6 months ago) by vrnova
ENH: merging trunk modification

Revision 16193  Directory Listing
Modified Tue Mar 15 14:32:55 2011 UTC (6 years, 6 months ago) by domibel
BUG: (BSplineToDeformationField) Send normal output to stdout instead of stderr , Use 'eval exec ' to execute a command

Revision 16190  Directory Listing
Modified Mon Mar 14 22:00:58 2011 UTC (6 years, 6 months ago) by domibel
BUG: Improve error handling for function calcDFVolumeNode

Revision 16180  Directory Listing
Modified Mon Mar 14 17:59:10 2011 UTC (6 years, 6 months ago) by domibel
BUG: CMTK's registration/warp command cannot change the scalar type of the output volume, resample the atlas in an additional step

Revision 16167  Directory Listing
Modified Wed Mar 9 16:53:41 2011 UTC (6 years, 6 months ago) by domibel
ENH: pass --fast --verbose options to each CMTK call

Revision 16166  Directory Listing
Modified Wed Mar 9 16:50:35 2011 UTC (6 years, 6 months ago) by domibel
ENH: Moved duplicated initialization code into a methed

Revision 16156  Directory Listing
Modified Fri Mar 4 17:27:22 2011 UTC (6 years, 6 months ago) by pieper
BUG: merge fix from trunk
------------------------------------------------------------------------
r16154 | pieper | 2011-03-04 07:51:32 -0500 (Fri, 04 Mar 2011) | 1 line

BUG: fix failing test: duplicate entries were being added to the bValues table and the calculation of the max bValue caused and array subscript error



Revision 16149  Directory Listing
Modified Thu Mar 3 20:10:55 2011 UTC (6 years, 6 months ago) by domibel
BUG: Install BSplineToDeformationField as a Plugin

Revision 16144  Directory Listing
Modified Thu Mar 3 17:01:29 2011 UTC (6 years, 6 months ago) by domibel
BUG: Install BSplineToDeformationField as a Plugin

Revision 16140  Directory Listing
Modified Wed Mar 2 21:56:51 2011 UTC (6 years, 6 months ago) by domibel
BUG: Task not stable enough for release

Revision 16134  Directory Listing
Modified Tue Mar 1 15:18:50 2011 UTC (6 years, 6 months ago) by fedorov
STYLE: added comment

Revision 16133  Directory Listing
Modified Tue Mar 1 15:18:33 2011 UTC (6 years, 6 months ago) by fedorov
BUG: copy the list of transforms from templated helper to the primary one

Revision 16124  Directory Listing
Modified Sun Feb 27 17:12:34 2011 UTC (6 years, 7 months ago) by pohl
BUG: Task not stable enough for release

Revision 16123  Directory Listing
Modified Sat Feb 26 16:26:20 2011 UTC (6 years, 7 months ago) by atriveg
COMP: Deleted Finseler module. Sorry

Revision 16122  Directory Listing
Modified Sat Feb 26 16:23:17 2011 UTC (6 years, 7 months ago) by atriveg
COMP: Deleted Finseler module. Sorry

Revision 16120  Directory Listing
Modified Sat Feb 26 05:53:17 2011 UTC (6 years, 7 months ago) by pohl
BUG: Based on Rons feedback we slightly modified the atlases

Revision 16118  Directory Listing
Modified Sat Feb 26 05:21:54 2011 UTC (6 years, 7 months ago) by pohl
BUG: Based on Rons feedback we slightly modified the atlases

Revision 16115  Directory Listing
Modified Sat Feb 26 01:39:46 2011 UTC (6 years, 7 months ago) by atriveg
STYLE: Minor fixes for SlicerFinslerTractography

Revision 16114  Directory Listing
Modified Sat Feb 26 01:38:52 2011 UTC (6 years, 7 months ago) by atriveg
STYLE: Minor fixes for SlicerFinslerTractography

Revision 16112  Directory Listing
Modified Fri Feb 25 22:43:32 2011 UTC (6 years, 7 months ago) by atriveg
ENH: Added module: SlicerFInslerTractography (alpha 1.0)

Revision 16111  Directory Listing
Modified Fri Feb 25 20:45:56 2011 UTC (6 years, 7 months ago) by pieper
COMP: changes to support creating 10.5 compatible builds on 10.6 mac operating systems

Revision 16110  Directory Listing
Modified Fri Feb 25 15:45:31 2011 UTC (6 years, 7 months ago) by domibel
BUG: we have to set the backgroundLevel to get rid of the segmentation errors outside the target volume

Revision 16098  Directory Listing
Modified Wed Feb 23 04:53:29 2011 UTC (6 years, 7 months ago) by domibel
ENH: Merge from trunk

Revision 16097  Directory Listing
Modified Tue Feb 22 21:40:00 2011 UTC (6 years, 7 months ago) by haehn
BUG: AtlasCreator: Merge from Trunk (rev. 16096).

Revision 16095  Directory Listing
Modified Tue Feb 22 20:50:57 2011 UTC (6 years, 7 months ago) by haehn
BUG: AtlasCreator: Merge from Trunk which fixed memory leaks.

Revision 16089  Directory Listing
Modified Tue Feb 22 17:37:06 2011 UTC (6 years, 7 months ago) by lauren
BUG: Only output point data tensors if they exist in input. Otherwise can have malformed polydata and crash on read in.

Revision 16088  Directory Listing
Modified Tue Feb 22 15:49:08 2011 UTC (6 years, 7 months ago) by domibel
ENH: Merge from trunk

Revision 16087  Directory Listing
Modified Tue Feb 22 02:33:16 2011 UTC (6 years, 7 months ago) by haehn
ENH: AtlasCreator: Merge from Trunk. Fixed a serious blocker and other smaller bugs. Added the Cxx guiless module to include C++ code. Added a commandline interface which can be launched: python atlascreator.py. Interface and code much cleaner now.

Revision 16075  Directory Listing
Modified Fri Feb 18 22:30:11 2011 UTC (6 years, 7 months ago) by naucoin
BUG: porting ongoing fix for bug 1003 from trunk

Revision 16074  Directory Listing
Modified Fri Feb 18 22:28:59 2011 UTC (6 years, 7 months ago) by naucoin
BUG: check that the slice widget is valid before calling a method on it

Revision 16069  Directory Listing
Modified Fri Feb 18 17:24:49 2011 UTC (6 years, 7 months ago) by pieper
COMP: allow test to pass even if a couple of pixels are not exactly matching (can happen on 32 bit builds)

Revision 16067  Directory Listing
Modified Fri Feb 18 16:20:20 2011 UTC (6 years, 7 months ago) by pieper
BUG: set tolerance for image testing to account for rounding errors on 32bit linux systems

Revision 16066  Directory Listing
Modified Thu Feb 17 22:28:16 2011 UTC (6 years, 7 months ago) by fedorov
ENH: raise up the tolerance threshold to address the unexplained failure on 32
bit platform

Revision 16061  Directory Listing
Modified Thu Feb 17 16:47:27 2011 UTC (6 years, 7 months ago) by pieper
COMP: re-enable some accidentally stubbed out brains tools

Revision 16060  Directory Listing
Modified Thu Feb 17 16:41:21 2011 UTC (6 years, 7 months ago) by pieper
COMP: stub out brains development code to fix max packaging issue - can be re-enabled once a fix is found

Revision 16058  Directory Listing
Modified Wed Feb 16 21:53:09 2011 UTC (6 years, 7 months ago) by mscully
BUG: Updated tolerances for BRAINSFitTest_AffineScaleNoMasks and BRAINSFitTest_RigidAnisotropicMasks to account for differences between 32bit and 64bit that are not true errors.

Revision 16055  Directory Listing
Modified Wed Feb 16 20:08:14 2011 UTC (6 years, 7 months ago) by fedorov
STYLE: added few debugging printouts

Revision 16054  Directory Listing
Modified Wed Feb 16 19:28:44 2011 UTC (6 years, 7 months ago) by harveerar
ENH: added functionality for displaying segmented and user added gestures

Revision 16053  Directory Listing
Modified Wed Feb 16 19:28:31 2011 UTC (6 years, 7 months ago) by harveerar
ENH: added functionality for displaying segmented and user added gestures

Revision 16052  Directory Listing
Modified Wed Feb 16 19:28:18 2011 UTC (6 years, 7 months ago) by harveerar
ENH: added functionality for displaying segmented and user added gestures

Revision 16050  Directory Listing
Modified Wed Feb 16 01:25:30 2011 UTC (6 years, 7 months ago) by domibel
ENH: remove some warp options: --delay-refine --exact-spacing

Revision 16049  Directory Listing
Modified Tue Feb 15 23:17:38 2011 UTC (6 years, 7 months ago) by pieper
COMP: merge from trunk of fix by Dominique

Revision 16048  Directory Listing
Modified Tue Feb 15 22:54:46 2011 UTC (6 years, 7 months ago) by harveerar
BUG: issue with race condition when the number of pixels remain unchanged between iterations

Revision 16042  Directory Listing
Modified Mon Feb 14 22:29:09 2011 UTC (6 years, 7 months ago) by pieper
COMP: change version numbers for 3.6.3 release

Revision 16040  Directory Listing
Modified Mon Feb 14 21:03:18 2011 UTC (6 years, 7 months ago) by naucoin
BUG: porting fix for bug 1003 from trunk, enabling hot keys to toggle states, trying to respect linking and compare view

Revision 16038  Directory Listing
Modified Mon Feb 14 19:48:39 2011 UTC (6 years, 7 months ago) by domibel
ENH: Added --fast option to CMTK's warp command

Revision 16036  Directory Listing
Modified Mon Feb 14 19:25:28 2011 UTC (6 years, 7 months ago) by pieper
BUG: fix incomplete merge from trunk (slice plane widget not enabled)

Revision 16032  Directory Listing
Modified Mon Feb 14 01:32:02 2011 UTC (6 years, 7 months ago) by domibel
ENH: Deactivate a task

Revision 16029  Directory Listing
Modified Sun Feb 13 18:55:30 2011 UTC (6 years, 7 months ago) by domibel
ENH: Merge from trunk

Revision 16028  Directory Listing
Modified Sun Feb 13 18:54:16 2011 UTC (6 years, 7 months ago) by domibel
ENH: Merge from trunk

Revision 16027  Directory Listing
Modified Sun Feb 13 17:01:49 2011 UTC (6 years, 7 months ago) by wjp@bwh.harvard.edu
ENH: merging from trunk.

Revision 16026  Directory Listing
Modified Sun Feb 13 16:58:16 2011 UTC (6 years, 7 months ago) by wjp@bwh.harvard.edu
ENH: merging from trunk

Revision 16025  Directory Listing
Modified Sun Feb 13 16:56:50 2011 UTC (6 years, 7 months ago) by wjp@bwh.harvard.edu
ENH: merging from trunk. adding error checking and styling

Revision 16024  Directory Listing
Modified Sun Feb 13 16:55:13 2011 UTC (6 years, 7 months ago) by wjp@bwh.harvard.edu
ENH: merging from trunk:  cleaning up error messages and adding scene renaming functionality

Revision 16023  Directory Listing
Modified Sun Feb 13 16:52:29 2011 UTC (6 years, 7 months ago) by wjp@bwh.harvard.edu
ENH: merging from trunk: adding feedback for user on remote load errors

Revision 16022  Directory Listing
Modified Sun Feb 13 16:50:51 2011 UTC (6 years, 7 months ago) by wjp@bwh.harvard.edu
ENH: merging from trunk: adding feedback to user for failed data transfers

Revision 16021  Directory Listing
Modified Sun Feb 13 16:49:14 2011 UTC (6 years, 7 months ago) by wjp@bwh.harvard.edu
ENH: merging from trunk: added failed data transfer status and methods to test for failed data transfers.

Revision 16020  Directory Listing
Modified Sun Feb 13 16:41:43 2011 UTC (6 years, 7 months ago) by wjp@bwh.harvard.edu
ENH: merging from trunk, adding logic to check for connection or server availability

Revision 16019  Directory Listing
Modified Sun Feb 13 16:38:47 2011 UTC (6 years, 7 months ago) by wjp@bwh.harvard.edu
ENH: merging from trunk, changes that use a temporary download buffer until download complete, checking for zero-length fileson download.

Revision 16018  Directory Listing
Modified Sun Feb 13 16:34:01 2011 UTC (6 years, 7 months ago) by wjp@bwh.harvard.edu
ENH: merging from trunk. added timeouts and logic that checks connection and server availability

Revision 16017  Directory Listing
Modified Sun Feb 13 04:41:25 2011 UTC (6 years, 7 months ago) by haehn
ENH: AtlasCreator: Merged rev 16016 from Trunk.

Revision 16001  Directory Listing
Modified Fri Feb 11 19:21:13 2011 UTC (6 years, 7 months ago) by domibel
ENH: Added '#include <iterator>'

Revision 15998  Directory Listing
Modified Fri Feb 11 16:31:29 2011 UTC (6 years, 7 months ago) by mscully
BUG: BRAINSResample test data now fetched from MIDAS.

Revision 15997  Directory Listing
Modified Fri Feb 11 16:30:54 2011 UTC (6 years, 7 months ago) by mscully
ENH: Added BRAINSROIAuto tests with MIDAS test data.

Revision 15996  Directory Listing
Modified Fri Feb 11 16:29:14 2011 UTC (6 years, 7 months ago) by mscully
BUG: Fixed BRAINSFitTest_BSplineScaleRotationHeadMasksUShort test

Revision 15962  Directory Listing
Modified Mon Feb 7 16:17:46 2011 UTC (6 years, 7 months ago) by fedorov
BUG: add reference attribute discarded by the update

Revision 15948  Directory Listing
Modified Sun Feb 6 17:27:59 2011 UTC (6 years, 7 months ago) by pieper
BUG: merge fixes from trunk: change color of preview outline to yellow; don't crash if scroll region goes outside of volume

Revision 15947  Directory Listing
Modified Sun Feb 6 16:59:56 2011 UTC (6 years, 7 months ago) by pieper
BUG: fix imcorrect merge

Revision 15946  Directory Listing
Modified Sun Feb 6 16:57:25 2011 UTC (6 years, 7 months ago) by pieper
BUG: merge of 15926 and 15944 from trunk to release branch - fixes to extension manager

Revision 15933  Directory Listing
Modified Sat Feb 5 20:09:53 2011 UTC (6 years, 7 months ago) by alexy
BUG_FIXED: fixed reference

Revision 15931  Directory Listing
Modified Sat Feb 5 19:34:42 2011 UTC (6 years, 7 months ago) by pieper
COMP: fix packaging of brainscommonlib

Revision 15925  Directory Listing
Modified Fri Feb 4 22:56:17 2011 UTC (6 years, 7 months ago) by domibel
ENH: disable debug output

Revision 15922  Directory Listing
Modified Fri Feb 4 19:13:43 2011 UTC (6 years, 7 months ago) by domibel
BUG: Merge from trunk

Revision 15921  Directory Listing
Modified Fri Feb 4 18:43:17 2011 UTC (6 years, 7 months ago) by domibel
BUG: Merge from trunk

Revision 15920  Directory Listing
Modified Fri Feb 4 17:07:40 2011 UTC (6 years, 7 months ago) by domibel
BUG: Merge from trunk

Revision 15913  Directory Listing
Modified Thu Feb 3 21:37:32 2011 UTC (6 years, 7 months ago) by naucoin
BUG: fixing bug 813, padding the image to ensure closed surface models, with test

Revision 15912  Directory Listing
Modified Thu Feb 3 14:04:45 2011 UTC (6 years, 7 months ago) by fedorov
BUG: vtkImageNeighborhoodFilter does not handle correctly kernel size
different from (3,3,3), which results in incorrectly initialized mask for
kernel (5,5,5). The earlier change is reverted pending resolution of the nei
filter issue.


Revision 15907  Directory Listing
Modified Wed Feb 2 16:59:27 2011 UTC (6 years, 7 months ago) by fedorov
BUG: change neighborhood from 4 to 8 (from 6 to 26 in 3D) to 
improve visualization of the label outline

Revision 15902  Directory Listing
Modified Wed Feb 2 00:48:06 2011 UTC (6 years, 7 months ago) by pieper
ENH: merge of r15876 from trunk: ENH: add orientation intent field so that multiple calls to RotateToVolumePlane do not end up switching all nodes to be axial 

Revision 15901  Directory Listing
Modified Wed Feb 2 00:46:38 2011 UTC (6 years, 7 months ago) by pieper
BUG: merge of r15877 from trunk: BUG: several fixes: improved event handling to threshold options are preserved (avoid MRML/GUI event intermingling); improved threshold behavior (no recalc if being used for paint, set threshold mode when Use For Paint is picked) 

Revision 15900  Directory Listing
Modified Wed Feb 2 00:41:12 2011 UTC (6 years, 7 months ago) by pieper
BUG: merge of r15878 from trunk: BUG: fix behavior of scale so that it move exactly to the center of a slice, even if the slice is rotated - this is important for painting 

Revision 15899  Directory Listing
Modified Wed Feb 2 00:38:19 2011 UTC (6 years, 7 months ago) by pieper
BUG: merge of rr15879 from trunk: BUG: fix calculation of slice offsets snapped to IJK space for cases where volume has been rotated or was acquired on oblique plane 

Revision 15891  Directory Listing
Modified Tue Feb 1 19:47:55 2011 UTC (6 years, 7 months ago) by harveerar
COMP: removed unused variables to fix warnings

Revision 15890  Directory Listing
Modified Tue Feb 1 19:47:23 2011 UTC (6 years, 7 months ago) by harveerar
STYLE: refactored code to remove unused methods

Revision 15889  Directory Listing
Modified Tue Feb 1 19:47:12 2011 UTC (6 years, 7 months ago) by harveerar
STYLE: refactored code to remove unused methods

Revision 15888  Directory Listing
Modified Tue Feb 1 19:27:33 2011 UTC (6 years, 7 months ago) by haehn
BUG: EMSegment: Merged bug fixes from Trunk rev. 15887, 15885, 15884, 15881.

Revision 15886  Directory Listing
Modified Tue Feb 1 19:20:26 2011 UTC (6 years, 7 months ago) by haehn
BUG: Fixed bug 1080, Extension wizard was broken. Merge from trunk.

Revision 15880  Directory Listing
Modified Tue Feb 1 04:33:08 2011 UTC (6 years, 7 months ago) by domibel
ENH: Merge from trunk

Revision 15875  Directory Listing
Modified Mon Jan 31 21:31:14 2011 UTC (6 years, 7 months ago) by tokuda
BUG: fixed slowdown due to increasing number of observers in vtkSlicerTransformEditorWidget.

Revision 15872  Directory Listing
Modified Mon Jan 31 19:12:09 2011 UTC (6 years, 7 months ago) by pieper
BUG: fix radius calculation for paint brush on oblique slices

Revision 15870  Directory Listing
Modified Mon Jan 31 18:42:53 2011 UTC (6 years, 7 months ago) by pieper
ENH: make the label outline just a bit thicker for visibility

Revision 15868  Directory Listing
Modified Mon Jan 31 18:35:18 2011 UTC (6 years, 7 months ago) by pieper
ENH: expose neighborhood size option for scriptability (merge from trunk)

Revision 15865  Directory Listing
Modified Sun Jan 30 21:20:05 2011 UTC (6 years, 7 months ago) by pieper
COMP: merge from trunk (fix const warning)

Revision 15864  Directory Listing
Modified Sun Jan 30 19:06:24 2011 UTC (6 years, 7 months ago) by pieper
ENH: merge optimizations from trunk

Revision 15863  Directory Listing
Modified Sun Jan 30 19:05:57 2011 UTC (6 years, 7 months ago) by pieper
BUG: merge from trunk - fix typo that causes runtime warnign

Revision 15862  Directory Listing
Modified Sun Jan 30 19:05:29 2011 UTC (6 years, 7 months ago) by pieper
ENH: merge fixes from trunk: preset icons in menu; drop to interactive resolution when dragging slice sliders; only put vtkGPU mapper in one viewer;

Revision 15861  Directory Listing
Modified Sun Jan 30 18:37:02 2011 UTC (6 years, 7 months ago) by pieper
ENH: merge of r15478 from trunk

Revision 15860  Directory Listing
Modified Sun Jan 30 18:23:44 2011 UTC (6 years, 7 months ago) by pieper
ENH: merge 15501 from trunk to release branch (replace models when building in editor)

Revision 15859  Directory Listing
Modified Sun Jan 30 18:21:20 2011 UTC (6 years, 7 months ago) by pieper
BUG: merge leak fix from trunk

Revision 15858  Directory Listing
Modified Sun Jan 30 18:20:22 2011 UTC (6 years, 7 months ago) by pieper
BUG: merge fix from trunk for transformed ROI in volume rendering

Revision 15857  Directory Listing
Modified Sun Jan 30 17:52:29 2011 UTC (6 years, 7 months ago) by pieper
ENH: merge from trunk: fix for bug/feature request 1077 - now CLI only updates label or bg layer when reading a volume

Revision 15855  Directory Listing
Modified Sun Jan 30 17:44:10 2011 UTC (6 years, 7 months ago) by pieper
BUG: fix incorrect merge from trunk

Revision 15854  Directory Listing
Modified Sun Jan 30 17:30:09 2011 UTC (6 years, 7 months ago) by pieper
BUG: migrate fixes for bug 1000 (orientation in 4D module) from slicer3 trunk

Revision 15853  Directory Listing
Modified Sun Jan 30 17:00:54 2011 UTC (6 years, 7 months ago) by pieper
BUG: fix case of hex for matching study and series uid

Revision 15851  Directory Listing
Modified Sun Jan 30 16:58:27 2011 UTC (6 years, 7 months ago) by pieper
ENH: make initial state of label grid menu match MRML state

Revision 15849  Directory Listing
Modified Sun Jan 30 16:52:40 2011 UTC (6 years, 7 months ago) by pieper
ENH: make label grid in slice view default to 'off' per user requests

Revision 15844  Directory Listing
Modified Sun Jan 30 04:30:05 2011 UTC (6 years, 7 months ago) by alexy
BUG_FIXED: 1064, 1056 Fixed file format computation in Save widget

Revision 15842  Directory Listing
Modified Sat Jan 29 16:03:08 2011 UTC (6 years, 7 months ago) by alexy
BUG_FIXED: 1064, 1056 Fixed file format computation in Save widget

Revision 15840  Directory Listing
Modified Fri Jan 28 15:45:23 2011 UTC (6 years, 7 months ago) by naucoin
ENH: add some hard coded colour categories, porting from trunk

Revision 15839  Directory Listing
Modified Fri Jan 28 15:02:46 2011 UTC (6 years, 7 months ago) by pieper
COMP: merge from trunk of workaround for broken cygwin dll

Revision 15838  Directory Listing
Modified Thu Jan 27 23:58:44 2011 UTC (6 years, 8 months ago) by domibel
ENH: Added a function 'char* GetPluginsDir()'

Revision 15837  Directory Listing
Modified Thu Jan 27 22:55:46 2011 UTC (6 years, 8 months ago) by naucoin
BUG: porting fixes from the trunk: take out extra ticks around names, check for proper range of rgb values, and for missing alpha

Revision 15835  Directory Listing
Modified Thu Jan 27 19:59:42 2011 UTC (6 years, 8 months ago) by mscully
BUG: Fixes the issues introduced by moving testing data to midas.

Revision 15831  Directory Listing
Modified Wed Jan 26 20:41:17 2011 UTC (6 years, 8 months ago) by fedorov
COMP: fix compile errors due to modifications in BRAINSCommonLib (?)

Revision 15829  Directory Listing
Modified Wed Jan 26 19:03:16 2011 UTC (6 years, 8 months ago) by domibel
BUG: addressed issue by Greg

Revision 15823  Directory Listing
Modified Tue Jan 25 22:19:02 2011 UTC (6 years, 8 months ago) by domibel
BUG: specify also a directory for --resultVolumeFileName, otherwise it would try to overwrite the directory which is specified in the mrml scene

Revision 15820  Directory Listing
Modified Tue Jan 25 14:59:52 2011 UTC (6 years, 8 months ago) by fedorov
BUG: add check to make sure label map was initialized

Revision 15819  Directory Listing
Modified Mon Jan 24 22:36:30 2011 UTC (6 years, 8 months ago) by naucoin
BUG: fix null pointer error that showed up in nightly tests on trunk

Revision 15818  Directory Listing
Modified Mon Jan 24 20:59:20 2011 UTC (6 years, 8 months ago) by pieper
COMP: merge fix from trunk for build issue of python on windows

Revision 15808  Directory Listing
Modified Mon Jan 24 15:13:15 2011 UTC (6 years, 8 months ago) by taox
BUG: for siemens diffusion weighted images, diffusion related information should be load from BMatrix field in the header. 

Revision 15805  Directory Listing
Modified Fri Jan 21 23:59:55 2011 UTC (6 years, 8 months ago) by mscully
BUG: fixed midas related build errors

Revision 15801  Directory Listing
Modified Fri Jan 21 23:11:39 2011 UTC (6 years, 8 months ago) by mscully
ENH: Added ability to read and right Slicer landmark files.

Revision 15800  Directory Listing
Modified Fri Jan 21 21:09:20 2011 UTC (6 years, 8 months ago) by mscully
ENH: Changes to allow for fetching testing data from midas.

Revision 15798  Directory Listing
Modified Fri Jan 21 21:06:54 2011 UTC (6 years, 8 months ago) by mscully
ENH: Changes to allow for fetching testing data from midas.

Revision 15796  Directory Listing
Modified Fri Jan 21 21:04:58 2011 UTC (6 years, 8 months ago) by mscully
ENH: Changes to allow for fetching testing data from midas.

Revision 15795  Directory Listing
Modified Fri Jan 21 20:33:05 2011 UTC (6 years, 8 months ago) by pieper
COMP: update to ITK 3.20

Revision 15793  Directory Listing
Modified Thu Jan 20 20:56:38 2011 UTC (6 years, 8 months ago) by haehn
ENH: Atlas Creator: Merge from trunk and enable in CMakeLists by default.

Revision 15792  Directory Listing
Modified Thu Jan 20 20:51:50 2011 UTC (6 years, 8 months ago) by haehn
ENH: Purged the old Atlas Creator which had no functionality and was only a copy of the GAD example.

Revision 15784  Directory Listing
Modified Tue Jan 18 23:00:01 2011 UTC (6 years, 8 months ago) by alexy
ENH: hierarchy loading performance enhancement

Revision 15781  Directory Listing
Modified Tue Jan 18 21:25:53 2011 UTC (6 years, 8 months ago) by alexy
BUG_FIXED: 1064 Fixed file format change in Save widget

Revision 15780  Directory Listing
Modified Tue Jan 18 21:24:35 2011 UTC (6 years, 8 months ago) by alexy
BUG_FIXED: 1064 Fixed file format change in Save widget

Revision 15777  Directory Listing
Modified Mon Jan 17 21:14:42 2011 UTC (6 years, 8 months ago) by fedorov
ENH: do not reset label pointer when ROI is changed
BUG: hide old ROI when a new one is selected

Revision 15746  Directory Listing
Modified Sun Jan 9 17:34:57 2011 UTC (6 years, 8 months ago) by pieper
BUG: merge fix from trunk

Revision 15741  Directory Listing
Modified Sat Jan 8 19:33:19 2011 UTC (6 years, 8 months ago) by fedorov
BUG: propagate fixes from the trunk

Revision 15738  Directory Listing
Modified Fri Jan 7 21:06:18 2011 UTC (6 years, 8 months ago) by naucoin
BUG: porting fixes from trunk, check for id clashes when loading a color file from disk. Fixed the test to conform to current return value from LoadColorFile

Revision 15732  Directory Listing
Modified Thu Jan 6 21:00:22 2011 UTC (6 years, 8 months ago) by fedorov
STYLE: clean up the code

Revision 15730  Directory Listing
Modified Thu Jan 6 18:38:06 2011 UTC (6 years, 8 months ago) by fedorov
ENH: remove warning per Ron's request

Revision 15717  Directory Listing
Modified Tue Jan 4 19:31:38 2011 UTC (6 years, 8 months ago) by alexy
BUG_FIXED: recreate lost ModelHierarchyLogic to the ViewerWidget, fixed saving of model hierarchy display node

Revision 15706  Directory Listing
Modified Wed Dec 29 00:23:35 2010 UTC (6 years, 9 months ago) by fedorov
BUG: reset the pointer to roi label when the scene is closed

Revision 15705  Directory Listing
Modified Tue Dec 28 21:06:49 2010 UTC (6 years, 9 months ago) by alexy
BUG_FIXED: merged fixes from slicer3 trunk for Nov-Dec of 2010

Revision 15703  Directory Listing
Modified Tue Dec 28 20:22:48 2010 UTC (6 years, 9 months ago) by fedorov
BUG: assign expected value to the attribute

Revision 15702  Directory Listing
Modified Tue Dec 28 20:16:09 2010 UTC (6 years, 9 months ago) by fedorov
BUG: make sure label selector can be used to select only label maps

Revision 15701  Directory Listing
Modified Mon Dec 27 17:00:30 2010 UTC (6 years, 9 months ago) by alexy
BUG_FIXED: merged fixes from slicer3 trunk for Nov-Dec of 2010

Revision 15699  Directory Listing
Modified Sun Dec 26 22:51:59 2010 UTC (6 years, 9 months ago) by domibel
STYLE: Fixed some typos based on automatic tests with lintian

Revision 15695  Directory Listing
Modified Sun Dec 26 21:51:55 2010 UTC (6 years, 9 months ago) by domibel
STYLE: Fixed some typos based on automatic tests with lintian

Revision 15693  Directory Listing
Modified Thu Dec 23 16:39:01 2010 UTC (6 years, 9 months ago) by fedorov
BUG: install demons binary!

Revision 15689  Directory Listing
Modified Thu Dec 23 01:54:37 2010 UTC (6 years, 9 months ago) by fedorov
BUG: fix memory leaks
STYLE: clean up the code

Revision 15686  Directory Listing
Modified Tue Dec 21 23:12:36 2010 UTC (6 years, 9 months ago) by naucoin
BUG: do some extra null pointer checking trying to avoid a seg fault on scene load

Revision 15683  Directory Listing
Modified Mon Dec 20 19:59:31 2010 UTC (6 years, 9 months ago) by francois_budin
ENH:Addition of tests

Revision 15682  Directory Listing
Modified Mon Dec 20 19:57:53 2010 UTC (6 years, 9 months ago) by francois_budin
ENH:Addition of tests

Revision 15681  Directory Listing
Modified Mon Dec 20 19:57:16 2010 UTC (6 years, 9 months ago) by francois_budin
ENH:Addition of tests

Revision 15680  Directory Listing
Modified Mon Dec 20 17:28:38 2010 UTC (6 years, 9 months ago) by fedorov
STYLE: remove unnecessary messages

Revision 15676  Directory Listing
Modified Sun Dec 19 19:15:22 2010 UTC (6 years, 9 months ago) by fedorov
BUG: call scene->Edited to propagate name change on a mrml node to both
selector and the tree widget

Revision 15666  Directory Listing
Modified Fri Dec 17 16:04:22 2010 UTC (6 years, 9 months ago) by alexy
BUG_FIXED: made ForegroundOpacity persistent for save scene and snapshots

Revision 15657  Directory Listing
Modified Wed Dec 15 02:17:40 2010 UTC (6 years, 9 months ago) by fedorov
BUG: addint the test that was in the old trunk

Revision 15652  Directory Listing
Modified Mon Dec 13 22:10:47 2010 UTC (6 years, 9 months ago) by wjp@bwh.harvard.edu
BUG: trying a fix for the delete problem that Kilian sees on Linux

Revision 15651  Directory Listing
Modified Mon Dec 13 21:44:49 2010 UTC (6 years, 9 months ago) by wjp@bwh.harvard.edu
BUG: tweaking delete method and getting rid of warning messages.

Revision 15650  Directory Listing
Modified Mon Dec 13 21:07:10 2010 UTC (6 years, 9 months ago) by wjp@bwh.harvard.edu
BUG: changing 'copy' of temporary buffer to destination file to 'move' and cleaning up some warnings

Revision 15645  Directory Listing
Modified Mon Dec 13 20:05:59 2010 UTC (6 years, 9 months ago) by wjp@bwh.harvard.edu
BUG: creating temporary download buffer into which gets checked for zero-length. If non-zero, then file is copied to actual destination file. Will change this copy to a move in next step.

Revision 15643  Directory Listing
Modified Fri Dec 10 23:20:28 2010 UTC (6 years, 9 months ago) by domibel
ENH: Added UPenn logo to SVN archive

Revision 15632  Directory Listing
Modified Thu Dec 9 00:53:54 2010 UTC (6 years, 9 months ago) by fedorov
BUG: demons executable was not installed!

Revision 15630  Directory Listing
Modified Thu Dec 9 00:27:22 2010 UTC (6 years, 9 months ago) by fedorov
BUG: fix to address bug 1057

Revision 15629  Directory Listing
Modified Wed Dec 8 20:33:45 2010 UTC (6 years, 9 months ago) by fedorov
ENH: do not use compression while writing DICOM: this may cause compatibility
problems for some non-Slicer users

Revision 15626  Directory Listing
Modified Wed Dec 8 17:11:16 2010 UTC (6 years, 9 months ago) by wjp@bwh.harvard.edu
BUG: adding NULL pointer checks around file pointers before calling fclose

Revision 15615  Directory Listing
Modified Mon Dec 6 19:19:58 2010 UTC (6 years, 9 months ago) by pkarasev
BUG: clone and push fix for SparseFieldLevelSetContourTest, just return flag correctly

Revision 15601  Directory Listing
Modified Thu Dec 2 13:34:03 2010 UTC (6 years, 9 months ago) by pieper
BUG: fix from Luca for parameter passing to command line modules from python

Revision 15596  Directory Listing
Modified Tue Nov 30 23:15:31 2010 UTC (6 years, 9 months ago) by pieper
BUG: merge patches from the trunk to fix the camera node re-use issues

Revision 15595  Directory Listing
Modified Tue Nov 30 20:03:07 2010 UTC (6 years, 9 months ago) by alexy
BUG_FIXED: make copy of lut so that they are not shared between mappers
also merged from the trunk:
15436
15470
15479

Revision 15587  Directory Listing
Modified Sun Nov 28 22:18:55 2010 UTC (6 years, 9 months ago) by clisle
BUG: Added TCL wrapping for FE-IAMesh building block nodes. 

Revision 15586  Directory Listing
Modified Fri Nov 26 20:48:39 2010 UTC (6 years, 10 months ago) by alexy
BUG_FIXED: 1046 Fixed fiducialListNode observing in GUI

Revision 15580  Directory Listing
Modified Wed Nov 24 19:36:47 2010 UTC (6 years, 10 months ago) by mscully
BUG: Corrected minimum cmake version

Revision 15578  Directory Listing
Modified Wed Nov 24 19:25:39 2010 UTC (6 years, 10 months ago) by mscully
ENH: Added logic to check for strange gradients in Siemens data and added a command line argument to force the calculation of the B values and directions from the B-matrix which exists in a private tag in siemens data.
BUG: Updated to correctly handle endianness differences between dicom and system.
STYLE: Cleaned up some of the code and slightly improved cross-platform compatibility.

Revision 15573  Directory Listing
Modified Wed Nov 24 15:18:39 2010 UTC (6 years, 10 months ago) by francois_budin
BUG:Division by 0 for gradient 0 of DWI image

Revision 15551  Directory Listing
Modified Mon Nov 22 23:04:29 2010 UTC (6 years, 10 months ago) by naucoin
BUG: port from trunk: install PolyDataToLabelmap and do more testing on the input model to avoid seg faults when no points are present

Revision 15550  Directory Listing
Modified Mon Nov 22 22:58:23 2010 UTC (6 years, 10 months ago) by naucoin
BUG: port from trunk svn commit 15549. test for error case of an empty model

Revision 15545  Directory Listing
Modified Mon Nov 22 20:47:04 2010 UTC (6 years, 10 months ago) by pieper
BUG: avoid crash when saving a scene with a bspline transform

Revision 15540  Directory Listing
Modified Mon Nov 22 12:33:58 2010 UTC (6 years, 10 months ago) by pieper
BUG: backed out code that should have been merged with the trunk first for testing before being added to the release branch (removed with svn merge -c -15443 http://svn.slicer.org/Slicer3/branches/Slicer-3-6)

Revision 15539  Directory Listing
Modified Sun Nov 21 17:27:20 2010 UTC (6 years, 10 months ago) by domibel
ENH: Merge from trunk

Revision 15538  Directory Listing
Modified Sun Nov 21 02:45:18 2010 UTC (6 years, 10 months ago) by fedorov
BUG: fix parameter type disagreement

Revision 15533  Directory Listing
Modified Fri Nov 19 20:37:28 2010 UTC (6 years, 10 months ago) by tokuda
BUG: copy recent bug fixes from trunk repository

Revision 15530  Directory Listing
Modified Fri Nov 19 17:02:55 2010 UTC (6 years, 10 months ago) by domibel
BUG: Merge from trunk

Revision 15526  Directory Listing
Modified Thu Nov 18 21:35:36 2010 UTC (6 years, 10 months ago) by fedorov
ENH: adding the color table used for DCE parameter map visualization

Revision 15524  Directory Listing
Modified Thu Nov 18 15:52:54 2010 UTC (6 years, 10 months ago) by domibel
BUG: Merge from trunk

Revision 15516  Directory Listing
Modified Tue Nov 16 21:08:55 2010 UTC (6 years, 10 months ago) by alexy
BUG_FIXED: MRMLScene::GetReferencedSubScene copy data from original nodes

Revision 15508  Directory Listing
Modified Tue Nov 16 13:33:34 2010 UTC (6 years, 10 months ago) by lassoan
BUG: BSplineDeformableRegistration to work correctly with rotated (non-identity direction cosines matrix) images. Before the fix the resampled moving image was just partially updated (some image regions were never deformed). - fixed compilation error on linux

Revision 15504  Directory Listing
Modified Mon Nov 15 18:47:59 2010 UTC (6 years, 10 months ago) by pieper
ENH: add control-left-drag to pan slice windows (helpful for mac users with one button)

Revision 15500  Directory Listing
Modified Mon Nov 15 12:40:07 2010 UTC (6 years, 10 months ago) by pieper
ENH: merge from trunk - allow parsing of command lines even when error code is generated (workaround for linux nvidia driver bug)

Revision 15493  Directory Listing
Modified Fri Nov 12 21:27:47 2010 UTC (6 years, 10 months ago) by alexy
ENH: added LoadData flag to vtkMRMLScene::GetReferencedSubScene method

Revision 15491  Directory Listing
Modified Fri Nov 12 20:19:39 2010 UTC (6 years, 10 months ago) by naucoin
BUG: when restoring a scene that has fewer fiducials in a fiducial list, there were unattached seeds left in the widget. Remove those during Update3DWidget by comparing the number of fids in the list versus seeds in the widget and removing extras. Missing ones will be added automatically. Port from trunk svn 15490

Revision 15488  Directory Listing
Modified Fri Nov 12 18:09:15 2010 UTC (6 years, 10 months ago) by alexy
ENH: added ReadDataOnLoad flag to scene to allow for "dry run" on Load

Revision 15486  Directory Listing
Modified Fri Nov 12 18:00:28 2010 UTC (6 years, 10 months ago) by alexy
ENH: dti performance and memory management improvements

Revision 15485  Directory Listing
Modified Fri Nov 12 14:35:49 2010 UTC (6 years, 10 months ago) by pieper
BUG: check for matrix before calculating determinant

Revision 15483  Directory Listing
Modified Fri Nov 12 13:40:27 2010 UTC (6 years, 10 months ago) by pieper
BUG: error checking in case command line module is missing (merge from trunk)

Revision 15481  Directory Listing
Modified Fri Nov 12 13:27:55 2010 UTC (6 years, 10 months ago) by pieper
ENH: move to stable extension branch per request from Mahnaz

Revision 15472  Directory Listing
Modified Thu Nov 11 20:29:25 2010 UTC (6 years, 10 months ago) by francois_budin
ENH:Change svn repository

Revision 15463  Directory Listing
Modified Wed Nov 10 19:53:06 2010 UTC (6 years, 10 months ago) by cammann
ENH: locator model is rotated by -90 degrees around the x-axis upon creation in AddLocatorModel(); this compensates for my penultimate changes

Revision 15462  Directory Listing
Modified Wed Nov 10 19:37:12 2010 UTC (6 years, 10 months ago) by cammann
ENH: removed declaration of ApplyTransform() in the header file; this belongs to my previous commit to the NeuroNav module

Revision 15461  Directory Listing
Modified Wed Nov 10 19:20:31 2010 UTC (6 years, 10 months ago) by cammann
ENH: deleted lots of code in UpdateLocatorTransform(): all that this code did, was (a) applying the registration matrix to the original tracker data by calling ApplyTransform() and (b) a rotation of -90 degrees around the x-axis; (a) can be done in a single line within UpdateLocatorTransform(); consequently, ApplyTransform() was removed; (b) should be done only ONCE upon creation of the locator model in AddLocatorModel() instead of rotating the locator model every time UpdateLocatorTransform() is called; consequently, this code was removed and a rotation of -90 degrees around the x-axis will be added to AddLocatorModel() in the next commit to compensate for this

Revision 15458  Directory Listing
Modified Wed Nov 10 16:19:57 2010 UTC (6 years, 10 months ago) by pieper
BUG: merge from trunk fix for tensor glyph normals

Revision 15456  Directory Listing
Modified Wed Nov 10 01:58:17 2010 UTC (6 years, 10 months ago) by cammann
BUG: reslicing now uses correct values (registered tracker data instead of original tracker data)

Revision 15454  Directory Listing
Modified Tue Nov 9 21:02:49 2010 UTC (6 years, 10 months ago) by cammann
ENH: NeuroNav locator model is automatically placed below the NeuroNav tracker transform in the MRML tree

Revision 15453  Directory Listing
Modified Tue Nov 9 20:32:51 2010 UTC (6 years, 10 months ago) by cammann
ENH: changed timer interval from 100 to 25 ms; this improves reslicing performance

Revision 15446  Directory Listing
Modified Mon Nov 8 20:59:38 2010 UTC (6 years, 10 months ago) by lassoan
ENH: Prevent recompilation of the whole ProstateNav module when the working copy is updated (only one file is still recompiled, to embed the working copy revision information) (Merged from trunk rev 15438)

Revision 15445  Directory Listing
Modified Mon Nov 8 20:12:57 2010 UTC (6 years, 10 months ago) by pieper
COMP: add new extension from Clement Vachet of UNC

Revision 15443  Directory Listing
Modified Mon Nov 8 19:55:01 2010 UTC (6 years, 10 months ago) by stefalie
ENH: added a slider for reducing radial diffusity to the streamline tractography

Revision 15442  Directory Listing
Modified Mon Nov 8 17:40:04 2010 UTC (6 years, 10 months ago) by pieper
COMP: merge fix from trunk for optional prune of package

Revision 15435  Directory Listing
Modified Fri Nov 5 12:29:52 2010 UTC (6 years, 10 months ago) by partyd
ENH: Add new NSIS template to will warn if the VS runtime is not detected.

Revision 15431  Directory Listing
Modified Wed Nov 3 19:23:31 2010 UTC (6 years, 10 months ago) by domibel
BUG: set BinDir to make functionality like GetSvnRevision available

Revision 15429  Directory Listing
Modified Wed Nov 3 19:16:46 2010 UTC (6 years, 10 months ago) by pieper
COMP: merge from trunk - expose option to copy extensions to directory

Revision 15427  Directory Listing
Modified Wed Nov 3 18:25:37 2010 UTC (6 years, 10 months ago) by domibel
BUG: Use BRAINSResampleCLI instead of the BRAINSResample GUI module

Revision 15425  Directory Listing
Modified Wed Nov 3 17:43:05 2010 UTC (6 years, 10 months ago) by pieper
COMP: merge from trunk - option to copy extensions to directory

Revision 15423  Directory Listing
Modified Wed Nov 3 17:08:27 2010 UTC (6 years, 10 months ago) by domibel
ENH: Merge from trunk

Revision 15420  Directory Listing
Modified Wed Nov 3 15:47:08 2010 UTC (6 years, 10 months ago) by fedorov
BUG: check output of subcommand execution before trying to parse it

Revision 15418  Directory Listing
Modified Wed Nov 3 12:34:42 2010 UTC (6 years, 10 months ago) by hjohnson
ENH:  Merged BRAINSTools fixes with 3-6 branch.

Revision 15408  Directory Listing
Modified Tue Nov 2 20:46:19 2010 UTC (6 years, 10 months ago) by fedorov
ENH: add description for sharpening parameters

Revision 15406  Directory Listing
Modified Tue Nov 2 20:38:56 2010 UTC (6 years, 10 months ago) by fedorov
BUG: merge bug fix for bug 1037

Revision 15393  Directory Listing
Modified Mon Nov 1 21:21:04 2010 UTC (6 years, 10 months ago) by haehn
ENH: Merge launch.tcl.in from trunk.

Revision 15389  Directory Listing
Modified Sat Oct 30 19:00:10 2010 UTC (6 years, 10 months ago) by haehn
BUG: Reverted to r15201 and then included changes which allow the passing of --tmp_dir and --config_dir during importing of module paths. This was cleaner than copying over the file from the trunk.

Revision 15388  Directory Listing
Modified Sat Oct 30 18:01:23 2010 UTC (6 years, 10 months ago) by alexy
BUG_FIXED 1034, 1035
Fixed memory leaks, compiler warning

Revision 15386  Directory Listing
Modified Sat Oct 30 16:18:10 2010 UTC (6 years, 10 months ago) by alexy
BUG_FIXED:1032
Fixed file path references in case loading from XML string

Revision 15384  Directory Listing
Modified Sat Oct 30 16:13:54 2010 UTC (6 years, 10 months ago) by domibel
ENH: Merge from trunk

Revision 15383  Directory Listing
Modified Sat Oct 30 15:09:34 2010 UTC (6 years, 10 months ago) by alexy
BUG_FIXED:1032,1031
Fixed crash in GetReferencedSubScene

Revision 15381  Directory Listing
Modified Fri Oct 29 20:43:21 2010 UTC (6 years, 10 months ago) by alexy
ENH: added SetURL and SetRootDirectory to vtkMRMLScene::GetReferencedSubScene

Revision 15375  Directory Listing
Modified Thu Oct 28 22:36:53 2010 UTC (6 years, 11 months ago) by domibel
ENH: Merge from trunk

Revision 15363  Directory Listing
Modified Thu Oct 28 03:56:44 2010 UTC (6 years, 11 months ago) by wjp@bwh.harvard.edu
BUG: fixing crash when LoadSaveDialog is invoked caused by SetFileName method

Revision 15362  Directory Listing
Modified Thu Oct 28 03:54:29 2010 UTC (6 years, 11 months ago) by wjp@bwh.harvard.edu
ENH: adding check for default remoteIO cache dir and creating if it doesn't exist

Revision 15361  Directory Listing
Modified Thu Oct 28 00:45:57 2010 UTC (6 years, 11 months ago) by domibel
BUG: Logic should be removed before we close the mrml scene

Revision 15357  Directory Listing
Modified Wed Oct 27 17:17:54 2010 UTC (6 years, 11 months ago) by domibel
STYLE: Typo

Revision 15355  Directory Listing
Modified Wed Oct 27 13:31:35 2010 UTC (6 years, 11 months ago) by fedorov
ENH: added reference volume attribute

Revision 15354  Directory Listing
Modified Wed Oct 27 13:31:06 2010 UTC (6 years, 11 months ago) by fedorov
ENH: added support of reference volume attribute for CLI (propagating from
oldtrunk->trunk->3-6)

Revision 15353  Directory Listing
Modified Wed Oct 27 13:08:13 2010 UTC (6 years, 11 months ago) by wjp@bwh.harvard.edu
BUG: changing default for remoteIO cache -- hanging it off Slicer Temporary Directory to prevent clearing important stuff from cache while managing remoteIO crumbs

Revision 15352  Directory Listing
Modified Wed Oct 27 00:01:34 2010 UTC (6 years, 11 months ago) by wjp@bwh.harvard.edu
ENH: updating error message on server/network check

Revision 15351  Directory Listing
Modified Wed Oct 27 00:00:34 2010 UTC (6 years, 11 months ago) by wjp@bwh.harvard.edu
BUG: increasing timeouts a little bit

Revision 15350  Directory Listing
Modified Tue Oct 26 22:45:23 2010 UTC (6 years, 11 months ago) by domibel
BUG: Revert one of my last change

Revision 15347  Directory Listing
Modified Tue Oct 26 22:24:05 2010 UTC (6 years, 11 months ago) by domibel
BUG: Since we are accessing our atlas volume files via the IO Manager we cannot use the --atlasVolumeFileNames anymore

Revision 15342  Directory Listing
Modified Tue Oct 26 18:50:42 2010 UTC (6 years, 11 months ago) by alexy
BUG_FIXED 1019.

Update slice polydata when slice image opacity changes.

Revision 15340  Directory Listing
Modified Tue Oct 26 18:40:22 2010 UTC (6 years, 11 months ago) by pieper
COMP: merge from trunk fix for http://cmake.org/Bug/view.php?id=11357

Revision 15337  Directory Listing
Modified Tue Oct 26 11:30:57 2010 UTC (6 years, 11 months ago) by pohl
BUG: Removed warning message due to Alex bug fix not necessary anymore

Revision 15334  Directory Listing
Modified Mon Oct 25 22:50:06 2010 UTC (6 years, 11 months ago) by tokuda
BUG: fix segmentation fault due to collection->Delete().

Revision 15333  Directory Listing
Modified Mon Oct 25 18:58:23 2010 UTC (6 years, 11 months ago) by pieper
COMP: merge from trunk to use fcopy for more buffer-friendly extension uploads

Revision 15330  Directory Listing
Modified Mon Oct 25 18:25:08 2010 UTC (6 years, 11 months ago) by domibel
BUG: use .mat extension for transformation files

Revision 15328  Directory Listing
Modified Mon Oct 25 18:12:59 2010 UTC (6 years, 11 months ago) by pieper
COMP: placeholder directory for extensions added to slicer-3-6 after the release is finalized

Revision 15327  Directory Listing
Modified Mon Oct 25 17:24:42 2010 UTC (6 years, 11 months ago) by pieper
ENH: use corrected volume name for growcut output

Revision 15326  Directory Listing
Modified Mon Oct 25 17:16:02 2010 UTC (6 years, 11 months ago) by pieper
COMP: enable growcut itk/vtk code in release branch and merge latest editor effect code to branch

Revision 15323  Directory Listing
Modified Sat Oct 23 14:22:54 2010 UTC (6 years, 11 months ago) by wjp@bwh.harvard.edu
BUG: At some point Slicer stopped respecting the home module and always opening in welcome. Made change to use registry setting if available.

Revision 15320  Directory Listing
Modified Fri Oct 22 21:57:29 2010 UTC (6 years, 11 months ago) by tokuda
PERF: volume reslicing -- optimize MRML node lookup

Revision 15315  Directory Listing
Modified Fri Oct 22 20:51:35 2010 UTC (6 years, 11 months ago) by pieper
ENH: bulk merge of changes from trunk, including editor fixes and additions.  See list at http://www.slicer.org/slicerWiki/index.php/Slicer3:3.6_Final_Issues for slicer 3.6.2

Revision 15314  Directory Listing
Modified Fri Oct 22 20:36:01 2010 UTC (6 years, 11 months ago) by wjp@bwh.harvard.edu
ENH: adding popup message to user if cache limit is exceeded.

Revision 15312  Directory Listing
Modified Fri Oct 22 19:31:00 2010 UTC (6 years, 11 months ago) by domibel
BUG: Merge from trunk

Revision 15310  Directory Listing
Modified Fri Oct 22 18:59:37 2010 UTC (6 years, 11 months ago) by alexy
BUG_FIXED: 1010
Added vtkMRMLScene::GetReferencedSubScene(vtkMRMLNode *node, vtkMRMLScene*) method

Use it in Modules/EMSegment/vtkEMSegmentMRMLManager.cxx

Revision 15308  Directory Listing
Modified Fri Oct 22 18:31:33 2010 UTC (6 years, 11 months ago) by pohl
BUG: Remove meaningless error msg as it confuses testing 

Revision 15306  Directory Listing
Modified Fri Oct 22 17:12:17 2010 UTC (6 years, 11 months ago) by naucoin
BUG: porting fix from trunk, leftover label could result in a seg fault if generate all is on. Added test

Revision 15300  Directory Listing
Modified Fri Oct 22 11:59:12 2010 UTC (6 years, 11 months ago) by pieper
BUG: merge from trunk: don't update gui until button release on window/level

Revision 15298  Directory Listing
Modified Fri Oct 22 07:00:41 2010 UTC (6 years, 11 months ago) by pohl
BUG: Made Command Line work - hasd to replace fetchmi for downloading files

Revision 15295  Directory Listing
Modified Thu Oct 21 22:52:42 2010 UTC (6 years, 11 months ago) by lantiga
ENH: Added possibility to use a fiducial list as the input for ICP registration and get the corresponding transform in output

Revision 15294  Directory Listing
Modified Thu Oct 21 22:05:07 2010 UTC (6 years, 11 months ago) by wjp@bwh.harvard.edu
ENH: turning off navigation mode by default on the crosshair, as per ron's request.

Revision 15291  Directory Listing
Modified Thu Oct 21 21:22:57 2010 UTC (6 years, 11 months ago) by domibel
BUG: Comment-out old code which causes memory leaks

Revision 15288  Directory Listing
Modified Thu Oct 21 20:07:19 2010 UTC (6 years, 11 months ago) by wjp@bwh.harvard.edu
BUG: fixing rest of linking behavior on widescreencompare view. Adding all compare layouts to sliceSwidget

Revision 15287  Directory Listing
Modified Thu Oct 21 19:32:10 2010 UTC (6 years, 11 months ago) by wjp@bwh.harvard.edu
BUG: fixing some of the linking bug on the WidescreenCompareLayout by adding the layout to some of the logic

Revision 15278  Directory Listing
Modified Thu Oct 21 16:52:29 2010 UTC (6 years, 11 months ago) by haehn
ENH: Added VMTKBranchSplitting and VMTKNetworkExtraction extensions.

Revision 15276  Directory Listing
Modified Thu Oct 21 16:48:19 2010 UTC (6 years, 11 months ago) by haehn
ENH: Remove deprecated VMTKLevelSetSegmentation extension

Revision 15275  Directory Listing
Modified Thu Oct 21 15:26:23 2010 UTC (6 years, 11 months ago) by pieper
BUG: merge from trunk - don't crash if DWI volume not readable in scene

Revision 15271  Directory Listing
Modified Thu Oct 21 14:18:51 2010 UTC (6 years, 11 months ago) by haehn
ENH: Merge new EMSegment from Trunk.

Revision 15270  Directory Listing
Modified Thu Oct 21 14:02:47 2010 UTC (6 years, 11 months ago) by haehn
ENH: Get rid of EMSegment

Revision 15269  Directory Listing
Modified Thu Oct 21 14:01:42 2010 UTC (6 years, 11 months ago) by haehn
BUG: Commandline arguments like --tmp_dir and --conf_dir now get passed to the PrintModulePaths call during Slicer launch.

Revision 15266  Directory Listing
Modified Wed Oct 20 19:15:08 2010 UTC (6 years, 11 months ago) by wjp@bwh.harvard.edu
BUG: adding infrastructure for checking network and server availability and cache limits before transacting with any remote service using FetchMI

Revision 15264  Directory Listing
Modified Wed Oct 20 00:42:38 2010 UTC (6 years, 11 months ago) by fedorov
BUG: fix for bug #1006

Revision 15261  Directory Listing
Modified Tue Oct 19 23:06:05 2010 UTC (6 years, 11 months ago) by fedorov
BUG: fix for bug #1002 -- save the output volume using the input volume pixel type

Revision 15257  Directory Listing
Modified Tue Oct 19 19:53:33 2010 UTC (6 years, 11 months ago) by pieper
ENH: merge from trunk: improved background error handling

Revision 15253  Directory Listing
Modified Tue Oct 19 18:43:59 2010 UTC (6 years, 11 months ago) by pieper
BUG: merge fix from trunk - don't explicitly render

Revision 15247  Directory Listing
Modified Tue Oct 19 14:11:58 2010 UTC (6 years, 11 months ago) by alexy
ENH: changed Fiducial Seeding Step Size range to 0.2-10

Revision 15244  Directory Listing
Modified Tue Oct 19 13:07:55 2010 UTC (6 years, 11 months ago) by alexy
ENH: changed Fiducial Seeding Step Size range to 0.5-9.5

Revision 15243  Directory Listing
Modified Tue Oct 19 13:01:35 2010 UTC (6 years, 11 months ago) by alexy
ENH: performance tune up for DTI volumes, better auto range for window/level control

Revision 15239  Directory Listing
Modified Mon Oct 18 22:55:53 2010 UTC (6 years, 11 months ago) by pieper
COMP: merge fixes from trunk

Revision 15237  Directory Listing
Modified Mon Oct 18 21:55:24 2010 UTC (6 years, 11 months ago) by pieper
BUG: merge fix from trunk for bug 1013

Revision 15231  Directory Listing
Modified Fri Oct 15 22:04:45 2010 UTC (6 years, 11 months ago) by tokuda
BUG: fixing the issue that Slicer crashes when there is one time point volume in the directory.

Revision 15225  Directory Listing
Modified Fri Oct 15 13:34:56 2010 UTC (6 years, 11 months ago) by alexy
BUG_FIXED: 988
Added code to handle window/level and threshold for DTI volumes

Revision 15220  Directory Listing
Modified Thu Oct 14 23:02:34 2010 UTC (6 years, 11 months ago) by wjp@bwh.harvard.edu
ENH: adding new defaults to layouts that use comparison viewers; request from Ron

Revision 15218  Directory Listing
Modified Thu Oct 14 20:02:55 2010 UTC (6 years, 11 months ago) by pieper
BUG: merge fix for 1001 from trunk (display open by default)

Revision 15211  Directory Listing
Modified Thu Oct 14 13:24:01 2010 UTC (6 years, 11 months ago) by domibel
ENH: Merge from trunk: Added a --tmp_dir and a --config_dir option to Slicer3-real

Revision 15207  Directory Listing
Modified Thu Oct 14 03:38:57 2010 UTC (6 years, 11 months ago) by domibel
ENH: Merge from trunk: Added a --tmp_dir and a --config_dir option to Slicer3-real

Revision 15206  Directory Listing
Modified Thu Oct 14 03:21:18 2010 UTC (6 years, 11 months ago) by domibel
ENH: Merge from trunk

Revision 15205  Directory Listing
Modified Thu Oct 14 02:41:33 2010 UTC (6 years, 11 months ago) by domibel
ENH: Merge from trunk: Removed false warnings for root node

Revision 15204  Directory Listing
Modified Thu Oct 14 02:39:17 2010 UTC (6 years, 11 months ago) by domibel
ENH: Merge from trunk: Popup a error message if pre-processing fails

Revision 15203  Directory Listing
Modified Thu Oct 14 02:37:46 2010 UTC (6 years, 11 months ago) by domibel
ENH: Merge from trunk: Build a extension module of CMTK

Revision 15202  Directory Listing
Modified Thu Oct 14 02:29:21 2010 UTC (6 years, 11 months ago) by domibel
ENH: Merge from trunk: Popup a error message if segmentation fails

Revision 15201  Directory Listing
Modified Thu Oct 14 02:25:30 2010 UTC (6 years, 11 months ago) by domibel
ENH: Merge from trunk: Adding build support for GNU/kFreeBSD

Revision 15199  Directory Listing
Modified Wed Oct 13 20:46:09 2010 UTC (6 years, 11 months ago) by naucoin
STYLE: changed warning to debug, as will hopefully only hit this case if we have a remote download

Revision 15196  Directory Listing
Modified Wed Oct 13 18:02:28 2010 UTC (6 years, 11 months ago) by vrnova
ENH: update sampling reate

Revision 15190  Directory Listing
Modified Tue Oct 12 18:45:00 2010 UTC (6 years, 11 months ago) by wjp@bwh.harvard.edu
ENH: Adding Ron's new layouts

Revision 15189  Directory Listing
Modified Tue Oct 12 18:43:32 2010 UTC (6 years, 11 months ago) by wjp@bwh.harvard.edu
ENH: Adding Ron's new layouts

Revision 15188  Directory Listing
Modified Tue Oct 12 18:17:23 2010 UTC (6 years, 11 months ago) by naucoin
BUG: porting fix for bug 993 from head to branch: return file paths to absolute after writing out relative paths in mrml files

Revision 15184  Directory Listing
Modified Tue Oct 12 15:12:39 2010 UTC (6 years, 11 months ago) by alexy
BUG_FIXED: 971 Added ReservedID API to scene, to avoid the assigning non-unique id's during scene Import

Revision 15174  Directory Listing
Modified Fri Oct 8 23:35:49 2010 UTC (6 years, 11 months ago) by wjp@bwh.harvard.edu
ENH: moving icons for volume rendering from trunk into branch.

Revision 15163  Directory Listing
Modified Wed Oct 6 20:22:36 2010 UTC (6 years, 11 months ago) by fedorov
BUG: fix for bug 990

Revision 15161  Directory Listing
Modified Wed Oct 6 20:09:31 2010 UTC (6 years, 11 months ago) by fedorov
BUG: use compression on bias correction results

Revision 15158  Directory Listing
Modified Wed Oct 6 19:29:53 2010 UTC (6 years, 11 months ago) by domibel
BUG: Added code to initialize NodeParametersLabel

Revision 15156  Directory Listing
Modified Wed Oct 6 18:48:00 2010 UTC (6 years, 11 months ago) by pohl
BUG: had to change code so that it would compile on gcc 4.5.0

Revision 15153  Directory Listing
Modified Wed Oct 6 16:45:17 2010 UTC (6 years, 11 months ago) by domibel
BUG: Fixed memory leaks

Revision 15151  Directory Listing
Modified Wed Oct 6 13:25:48 2010 UTC (6 years, 11 months ago) by pieper
STYLE: fix typo (thanks Attila\!)

Revision 15147  Directory Listing
Modified Tue Oct 5 21:14:51 2010 UTC (6 years, 11 months ago) by pieper
BUG: merge fix from trunk (don't change to prescribed spacing mode unless you are linked)

Revision 15145  Directory Listing
Modified Tue Oct 5 17:34:06 2010 UTC (6 years, 11 months ago) by pieper
BUG: fix incomplete checking of camera transform fix

Revision 15144  Directory Listing
Modified Tue Oct 5 15:32:08 2010 UTC (6 years, 11 months ago) by naucoin
BUG: try to deal with malformed paths in file list, find them relative to the archeytpe instead of the mrml file if the first try fails to find a file that exists

Revision 15143  Directory Listing
Modified Tue Oct 5 15:30:49 2010 UTC (6 years, 11 months ago) by naucoin
BUG: fixing bug 991, don't support .txt extensions for fiducial files, and avoid crash when color logic tries to read one

Revision 15142  Directory Listing
Modified Tue Oct 5 15:28:27 2010 UTC (6 years, 11 months ago) by naucoin
COMP: added missing include of vtkMatrix4x4

Revision 15141  Directory Listing
Modified Tue Oct 5 12:55:24 2010 UTC (6 years, 11 months ago) by pieper
BUG: merge fix from trunk (snapping to grid for edits)

Revision 15139  Directory Listing
Modified Tue Oct 5 11:20:22 2010 UTC (6 years, 11 months ago) by pieper
BUG: merge bug fix from trunk for transforming camera

Revision 15134  Directory Listing
Modified Sun Oct 3 22:08:37 2010 UTC (6 years, 11 months ago) by fedorov
BUG: use compression for output file

Revision 15133  Directory Listing
Modified Sun Oct 3 17:09:33 2010 UTC (6 years, 11 months ago) by alexy
BUG_FIXED: 976
account for multiple display nodes while removing unreferenced nodes in scene save

Revision 15130  Directory Listing
Modified Fri Oct 1 14:37:08 2010 UTC (6 years, 11 months ago) by domibel
ENH: Added a label - in addition to the tree - to show the selected anatomical tree node

Revision 15129  Directory Listing
Modified Fri Oct 1 00:17:15 2010 UTC (6 years, 11 months ago) by pieper
ENH: merge fix for camera transform from trunk

Revision 15125  Directory Listing
Modified Thu Sep 30 16:00:56 2010 UTC (6 years, 11 months ago) by domibel
ENH: Added functionality to call N4ITKBiasFieldCorrectionCLI from EMSegmentCommandLine

Revision 15124  Directory Listing
Modified Thu Sep 30 15:08:30 2010 UTC (6 years, 11 months ago) by wjp@bwh.harvard.edu
BUG: turning off spin/rock in navigation render for better interactive performance and updating background and actor color in the main viewer anytime mrml view node changes.

Revision 15122  Directory Listing
Modified Thu Sep 30 15:04:21 2010 UTC (6 years, 11 months ago) by domibel
STYLE: Added "TCLMRI: " to each puts command

Revision 15120  Directory Listing
Modified Thu Sep 30 14:33:33 2010 UTC (6 years, 11 months ago) by domibel
STYLE: Added "TCL: " to each puts command

Revision 15118  Directory Listing
Modified Wed Sep 29 21:10:57 2010 UTC (6 years, 11 months ago) by wjp@bwh.harvard.edu
BUG: changed name of side-by-side layout to not have 'compare view' in it, since it's different than the compare view. This is for a request from Ron.

Revision 15115  Directory Listing
Modified Wed Sep 29 20:39:45 2010 UTC (6 years, 11 months ago) by domibel
ENH: remove command line node after the command line is executed

Revision 15109  Directory Listing
Modified Wed Sep 29 19:59:26 2010 UTC (6 years, 11 months ago) by domibel
ENH: remove command line node after the command line is executed

Revision 15106  Directory Listing
Modified Wed Sep 29 18:08:59 2010 UTC (6 years, 11 months ago) by wjp@bwh.harvard.edu
ENH: fixing bug causing actors in scene to respect different cameras. Was causing scene saved with spinning/rocking turned on to load without spinning/rocking and axis label actors to not respect current active camera.

Revision 15103  Directory Listing
Modified Tue Sep 28 15:57:22 2010 UTC (7 years ago) by domibel
STYLE: removed trailing whitespaces and applied automatic indentation

Revision 15101  Directory Listing
Modified Tue Sep 28 14:44:16 2010 UTC (7 years ago) by pieper
COMP: merge from trunk - switch to svn Slicer3-lib-mirror to work around issues with githum svn interface

Revision 15096  Directory Listing
Modified Mon Sep 27 08:55:54 2010 UTC (7 years ago) by pohl
STYLE: Show target input channel after preprocessing

Revision 15094  Directory Listing
Modified Sat Sep 25 18:39:08 2010 UTC (7 years ago) by pieper
ENH: merge from trunk: add shift-left-drag as alias for middle mouse button

Revision 15093  Directory Listing
Modified Sat Sep 25 18:38:30 2010 UTC (7 years ago) by pieper
ENH: merge from trunk - don't pick when locked

Revision 15087  Directory Listing
Modified Fri Sep 24 23:35:13 2010 UTC (7 years ago) by domibel
STYLE: Typo

Revision 15068  Directory Listing
Modified Fri Sep 24 19:03:01 2010 UTC (7 years ago) by pieper
ENH: merge fix from trunk for showing patient/study/series in sorted order

Revision 15066  Directory Listing
Modified Fri Sep 24 18:56:37 2010 UTC (7 years ago) by pohl
BUG: forgot to check in for moving alpha value

Revision 15064  Directory Listing
Modified Fri Sep 24 14:39:41 2010 UTC (7 years ago) by wjp@bwh.harvard.edu
BUG: Adding a requestrender to show visibility changes on box and label axis actors; also ViewControlGUI was not observing key events on mrml scene (new, close, node added/deleted) events, causing menus not to track MRML

Revision 15063  Directory Listing
Modified Fri Sep 24 14:37:48 2010 UTC (7 years ago) by wjp@bwh.harvard.edu
BUG: making the warning for duplicate filenames in the list of checked files to save more prominent so it's harder to mindlessly click ok. Presentation for error message that file is already on disk is different and less warning-y.

Revision 15060  Directory Listing
Modified Fri Sep 24 10:39:46 2010 UTC (7 years ago) by pohl
BUG: Alpha value was not correctly transfered from node to vtkImageEMLocalSegmenter

Revision 15059  Directory Listing
Modified Fri Sep 24 09:59:37 2010 UTC (7 years ago) by pohl
BUG: Commit cosmetic changes based on Ron's feedback

Revision 15055  Directory Listing
Modified Thu Sep 23 18:59:53 2010 UTC (7 years ago) by domibel
STYLE: Fixed typo

Revision 15051  Directory Listing
Modified Thu Sep 23 18:16:38 2010 UTC (7 years ago) by domibel
STYLE: removed trailing whitespaces and applied automatic indentation

Revision 15049  Directory Listing
Modified Thu Sep 23 17:04:50 2010 UTC (7 years ago) by pieper
COMP: merge patches from the trunk (fix compile warnings)

Revision 15047  Directory Listing
Modified Thu Sep 23 13:36:34 2010 UTC (7 years ago) by wjp@bwh.harvard.edu
ENH: adding comment.

Revision 15046  Directory Listing
Modified Thu Sep 23 13:28:43 2010 UTC (7 years ago) by wjp@bwh.harvard.edu
ENH: adding CTSC logo resource

Revision 15045  Directory Listing
Modified Thu Sep 23 03:22:30 2010 UTC (7 years ago) by pohl
BUG: MRML node changed 

Revision 15043  Directory Listing
Modified Wed Sep 22 21:44:50 2010 UTC (7 years ago) by wjp@bwh.harvard.edu
ENH: adding module for petct project in Dr. Horky's lab, using Slicer3.6.x

Revision 15039  Directory Listing
Modified Wed Sep 22 17:48:23 2010 UTC (7 years ago) by pieper
BUG: merge bug fix from trunk - editor operations on non-aligned volumes

Revision 15035  Directory Listing
Modified Wed Sep 22 14:14:15 2010 UTC (7 years ago) by domibel
ENH: Added a label to show the selected node during specifying the priors

Revision 15034  Directory Listing
Modified Tue Sep 21 21:59:16 2010 UTC (7 years ago) by domibel
BUG: Added check to make sure that the user cannot delete the root node

Revision 15032  Directory Listing
Modified Tue Sep 21 19:29:52 2010 UTC (7 years ago) by domibel
ENH: Added a warning to avoid ambiguous input channel names

Revision 15029  Directory Listing
Modified Tue Sep 21 16:55:38 2010 UTC (7 years ago) by millerjv
BUG: Reformat Widget in linked compare views. Slice node would change the interaction mode on a slice if it recognized the slice as an axial, sagittal, coronal. This would pull a slice out of reformat mode. Modified code to allow reformations to be done without being in reformat mode. Optimized reformat widget use to only modify one slice node while interacting and then communicating to the linked nodes at the end of the interaction. Updated the logic for linked logics in SlicePlaneSWidget to match SliceSWidget

Revision 15028  Directory Listing
Modified Tue Sep 21 16:09:23 2010 UTC (7 years ago) by domibel
BUG: Added check for emtpy 'Task Name'

Revision 15022  Directory Listing
Modified Mon Sep 20 11:05:59 2010 UTC (7 years ago) by pohl
BUG: addresses bug 972

Revision 15021  Directory Listing
Modified Sat Sep 18 07:48:40 2010 UTC (7 years ago) by pohl
BUG: Now in simple mode the gui steps are not shown anymore, I updated the help, inncluded automatic computation of training samples, and fixed the autosampling bug

Revision 15019  Directory Listing
Modified Sat Sep 18 00:38:22 2010 UTC (7 years ago) by fedorov
BUG: allow non-1 label values

Revision 15016  Directory Listing
Modified Fri Sep 17 14:02:08 2010 UTC (7 years ago) by domibel
ENH: Added a ProgressDialog during the pre-processing step and the segmentation step

Revision 15011  Directory Listing
Modified Thu Sep 16 21:26:28 2010 UTC (7 years ago) by pohl
BUG: When PreprocessingSetting was empty then Simple mode failed to run through bc string was set to NULL

Revision 15002  Directory Listing
Modified Wed Sep 15 12:09:23 2010 UTC (7 years ago) by pieper
BUG: back out changes that generated the 'directions not found' dialog box

Revision 15000  Directory Listing
Modified Tue Sep 14 21:24:39 2010 UTC (7 years ago) by pohl
BUG: Address issue 974

Revision 14998  Directory Listing
Modified Tue Sep 14 20:48:47 2010 UTC (7 years ago) by domibel
BUG: bug948 , fixes a SEGFAULT when saving intermediate results

Revision 14991  Directory Listing
Modified Mon Sep 13 15:13:51 2010 UTC (7 years ago) by millerjv
BUG: 927. Toggling red viewer visibility in compare view when views are linked

Revision 14986  Directory Listing
Modified Mon Sep 13 03:55:14 2010 UTC (7 years ago) by pohl
BUG: Made EMSegmenter Simple Mode work

Revision 14984  Directory Listing
Modified Sun Sep 12 16:23:56 2010 UTC (7 years ago) by pohl
BUG: resolved issue 970 and polished output

Revision 14983  Directory Listing
Modified Sun Sep 12 16:23:24 2010 UTC (7 years ago) by pohl
BUG: resolved issue 970 and polished output

Revision 14981  Directory Listing
Modified Sat Sep 11 20:42:35 2010 UTC (7 years ago) by domibel
BUG: Fixes bug 969, adding a connection timeout of 3 seconds

Revision 14979  Directory Listing
Modified Sat Sep 11 15:34:52 2010 UTC (7 years ago) by pohl
BUG: Resolve issue 0959 about multithreading

Revision 14971  Directory Listing
Modified Wed Sep 8 22:06:25 2010 UTC (7 years ago) by millerjv
ENH: merge r14566 and r14586 from the trunk

Revision 14964  Directory Listing
Modified Wed Sep 8 12:31:46 2010 UTC (7 years ago) by vrnova
ENH: alignment on sampling rate across different mappers.

Revision 14881  Directory Listing
Modified Thu Sep 2 17:57:14 2010 UTC (7 years ago) by naucoin
BUG: when reading in a mrml scene that contains FiducialSeedingParameters node information that points to invalid fiducial lists or volumes or output tracts, seeding from a fiducial would break once valid seeds were added and moved around. Test for valid nodes before setting up the node selector and observers

Revision 14783  Directory Listing
Modified Tue Aug 31 20:00:13 2010 UTC (7 years ago) by alexy
ENH: addedEndoNav module

Revision 14782  Directory Listing
Modified Tue Aug 31 19:59:11 2010 UTC (7 years ago) by alexy
ENH: added CameraBasedROI module

Revision 14781  Directory Listing
Modified Tue Aug 31 19:53:35 2010 UTC (7 years ago) by alexy
ENH: endonav branch

Revision 14768  Directory Listing
Modified Tue Aug 31 15:47:18 2010 UTC (7 years ago) by naucoin
BUG: fixing bug 840, return from RequestRender if rendering is disabled, so don't get into a state where rendering is disabled and a render is pending as RequestRender calls will not break out of that state. Updated Print with camera and view node.

Revision 14751  Directory Listing
Modified Mon Aug 30 20:25:18 2010 UTC (7 years ago) by pieper
BUG: avoid sampling outside volume when working with datasets that have no gradient information

Revision 14668  Directory Listing
Modified Mon Aug 23 16:45:26 2010 UTC (7 years, 1 month ago) by pieper
BUG: merge fix from trunk (alignment of axes for rotated volumes)

Revision 14665  Directory Listing
Modified Mon Aug 23 16:23:22 2010 UTC (7 years, 1 month ago) by domibel
BUG: changed title of buttons due to Ron's comments

Revision 14652  Directory Listing
Modified Thu Aug 19 21:18:35 2010 UTC (7 years, 1 month ago) by naucoin
BUG: check for a divide by zero when don't find any .s3ext files

Revision 14647  Directory Listing
Modified Thu Aug 19 19:24:19 2010 UTC (7 years, 1 month ago) by hayes
ENH: Changed version to 3.6.1

Revision 14641  Directory Listing
Modified Thu Aug 19 15:45:07 2010 UTC (7 years, 1 month ago) by pieper
BUG: merge patch from trunk for handling negative spacing errors

Revision 14607  Directory Listing
Modified Wed Aug 18 04:43:40 2010 UTC (7 years, 1 month ago) by pohl
BUG: Removed KWWidgets that did not work under Windows

Revision 14572  Directory Listing
Modified Sun Aug 15 15:02:23 2010 UTC (7 years, 1 month ago) by alexy
ENH: comply with slicer3.6 API

Revision 14564  Directory Listing
Modified Fri Aug 13 01:49:49 2010 UTC (7 years, 1 month ago) by finetjul
BUG: Propagate API change into vtkSlicerOpenGLVolumeTextureMapper3D.

On 2010/07/20, the API for IsRenderSupported() has been changed in
vtkSlicerVolumeTextureMapper3D.h. However it has not been propagated in
vtkSlicerOpenGLVolumeTextureMapper.

Revision 14529  Directory Listing
Modified Tue Aug 10 19:32:55 2010 UTC (7 years, 1 month ago) by stefalie
ENH: changed sigma

Revision 14520  Directory Listing
Modified Tue Aug 10 18:15:36 2010 UTC (7 years, 1 month ago) by stefalie
ENH: upadted to latest version that records more info

Revision 14506  Directory Listing
Modified Mon Aug 9 18:28:27 2010 UTC (7 years, 1 month ago) by pieper
BUG: remove dead debugging code

Revision 14505  Directory Listing
Modified Mon Aug 9 18:21:51 2010 UTC (7 years, 1 month ago) by pieper
BUG: avoid crash caused by trying to apply editor effects in response to non-gui events

Revision 14470  Directory Listing
Modified Thu Aug 5 00:04:03 2010 UTC (7 years, 1 month ago) by pohl
BUG: Reading from disk now works correctly from the commandline module

Revision 14459  Directory Listing
Modified Tue Aug 3 22:26:44 2010 UTC (7 years, 1 month ago) by hayes
ENH: changed to 3.6.1

Revision 14458  Directory Listing
Modified Tue Aug 3 22:25:53 2010 UTC (7 years, 1 month ago) by hayes
ENH: changed to 3.6.1

Revision 14455  Directory Listing
Modified Tue Aug 3 21:52:37 2010 UTC (7 years, 1 month ago) by pieper
BUG: be sure the volume is updated before using it to calculate window/level

Revision 14453  Directory Listing
Modified Tue Aug 3 20:54:55 2010 UTC (7 years, 1 month ago) by pieper
BUG: don't set the ModifiedSinceRead flag on the input volume

Revision 14451  Directory Listing
Modified Tue Aug 3 19:38:17 2010 UTC (7 years, 1 month ago) by pieper
BUG: fixes from trunk for bug 932 (editor sometimes draws on adjacent slice due to rounding error)

Revision 14450  Directory Listing
Modified Tue Aug 3 19:18:58 2010 UTC (7 years, 1 month ago) by pieper
BUG: migrate changes from trunk that remove warning messages when working with volumes that are a single pixel in any dimension (i.e. single slices)

Revision 14444  Directory Listing
Modified Tue Aug 3 18:58:02 2010 UTC (7 years, 1 month ago) by pieper
BUG: catch another place where a bad directory name could be executed as code

Revision 14442  Directory Listing
Modified Tue Aug 3 18:23:18 2010 UTC (7 years, 1 month ago) by pieper
BUG: invoke a DisplayModifiedEvent when associating a new display node with a displayable (so, for example, the data tree icon can update correctly

Revision 14438  Directory Listing
Modified Tue Aug 3 13:00:40 2010 UTC (7 years, 1 month ago) by pieper
BUG: don't try to control visibility of multiple display nodes with a single toggle control

Revision 14436  Directory Listing
Modified Tue Aug 3 10:45:03 2010 UTC (7 years, 1 month ago) by pohl
BUG: Slicer crashed when image data is empty

Revision 14435  Directory Listing
Modified Tue Aug 3 10:41:48 2010 UTC (7 years, 1 month ago) by pohl
BUG: sampling flag was set too low

Revision 14432  Directory Listing
Modified Tue Aug 3 10:30:47 2010 UTC (7 years, 1 month ago) by pohl
ENH: Included Brainsfit in EMSegmenter command line executable

Revision 14416  Directory Listing
Modified Mon Aug 2 13:44:45 2010 UTC (7 years, 1 month ago) by pieper
BUG: check for valid data before access (happens when reloading scene)

Revision 14414  Directory Listing
Modified Mon Aug 2 01:50:56 2010 UTC (7 years, 1 month ago) by blezek
BUG: Using correct python

Revision 14412  Directory Listing
Modified Sun Aug 1 02:29:47 2010 UTC (7 years, 1 month ago) by blezek
ENH: Added support for FilteredTractography

Revision 14411  Directory Listing
Modified Sun Aug 1 02:27:41 2010 UTC (7 years, 1 month ago) by blezek
ENH: Making a branch for integration of FilteredTractography.

Revision 14406  Directory Listing
Modified Fri Jul 30 13:17:24 2010 UTC (7 years, 1 month ago) by fedorov
BUG: only linear transforms can be handled correctly

Revision 14404  Directory Listing
Modified Fri Jul 30 03:26:25 2010 UTC (7 years, 1 month ago) by pohl
BUG: Input channel has to have non-empty volume

Revision 14401  Directory Listing
Modified Fri Jul 30 00:43:36 2010 UTC (7 years, 2 months ago) by pohl
BUG: Resolved 892 by adding the channel

Revision 14396  Directory Listing
Modified Thu Jul 29 23:13:16 2010 UTC (7 years, 2 months ago) by pieper
COMP: merge fix from trunk (use std:: qualifiers to avoid namespace issues on Sun - fixes from Attila Nagy) - additional .cpp files not included in first commit

Revision 14395  Directory Listing
Modified Thu Jul 29 23:10:30 2010 UTC (7 years, 2 months ago) by pieper
COMP: merge fix from trunk (use std:: qualifiers to avoid namespace issues on Sun - fixes from Attila Nagy)

Revision 14393  Directory Listing
Modified Thu Jul 29 21:10:42 2010 UTC (7 years, 2 months ago) by hjohnson
ENH:  Merged three branches with upcomming KWStyle formatting from ITK.

Revision 14371  Directory Listing
Modified Thu Jul 29 17:29:01 2010 UTC (7 years, 2 months ago) by demian
BUG: Corrected the transorm handling of the DTI volume in fiducial seeding

Revision 14326  Directory Listing
Modified Fri Jul 23 23:48:10 2010 UTC (7 years, 2 months ago) by tokuda
BUG: OpenIGTLink image export

Revision 14309  Directory Listing
Modified Thu Jul 22 20:30:28 2010 UTC (7 years, 2 months ago) by pieper
BUG: migrate code fixes from trunk to release

Revision 14297  Directory Listing
Modified Thu Jul 22 13:09:27 2010 UTC (7 years, 2 months ago) by vrnova
BUG: fg volume property widget wasn't updating correctly

Revision 14265  Directory Listing
Modified Tue Jul 20 18:37:31 2010 UTC (7 years, 2 months ago) by finetjul
BUG: When changing of volume mapper, the extension manager was crashing

because it is expecting a valid renderwindow (and not NULL).

Revision 14264  Directory Listing
Modified Tue Jul 20 18:37:25 2010 UTC (7 years, 2 months ago) by finetjul
BUG: When changing of volume mapper, the extension manager was crashing

because it is expecting a valid renderwindow (and not NULL).

Revision 14263  Directory Listing
Modified Tue Jul 20 18:17:31 2010 UTC (7 years, 2 months ago) by finetjul
BUG: When changing of volume mapper, the extension manager was crashing

Revision 14262  Directory Listing
Modified Tue Jul 20 18:17:23 2010 UTC (7 years, 2 months ago) by finetjul
BUG: Scalar data array for histogram can have a name, take it into account

when retrieving the histogram as its name is a based on the scalar array
name.

Revision 14257  Directory Listing
Modified Tue Jul 20 14:08:20 2010 UTC (7 years, 2 months ago) by tokuda
BUG: fixing memory leak from locator model

Revision 14208  Directory Listing
Modified Sat Jul 17 17:28:55 2010 UTC (7 years, 2 months ago) by clisle
ENH: FE-Mesh module: added image and surface import from MRML (reflecting improvements from the trunk also to Slicer 3-6). 

Revision 14206  Directory Listing
Modified Fri Jul 16 22:26:38 2010 UTC (7 years, 2 months ago) by pohl
BUG: Addresses bug 899 - just checked if it could load it or not

Revision 14205  Directory Listing
Modified Fri Jul 16 22:26:14 2010 UTC (7 years, 2 months ago) by pohl
BUG: Just modified text

Revision 14200  Directory Listing
Modified Fri Jul 16 18:45:47 2010 UTC (7 years, 2 months ago) by pohl
BUG: Possible Fix for 892

Revision 14198  Directory Listing
Modified Fri Jul 16 17:32:24 2010 UTC (7 years, 2 months ago) by barre
ENH: backport Superbuild from trunk (minus CTK)

Revision 14197  Directory Listing
Modified Fri Jul 16 16:30:00 2010 UTC (7 years, 2 months ago) by alexy
BUG_FIXED: 925
Check for unique file names before saving data

Revision 14183  Directory Listing
Modified Thu Jul 15 16:18:31 2010 UTC (7 years, 2 months ago) by pohl
BUG: fixed bug 905

Revision 14181  Directory Listing
Modified Thu Jul 15 14:37:31 2010 UTC (7 years, 2 months ago) by naucoin
BUG: check for existance of local file before closing it, avoids a seg fault when given an invalid url, port from trunk

Revision 14140  Directory Listing
Modified Tue Jul 13 19:22:43 2010 UTC (7 years, 2 months ago) by alexy
ENH: added UseIndexSpace option to LabelmapSeeding module

Revision 14129  Directory Listing
Modified Tue Jul 13 00:23:08 2010 UTC (7 years, 2 months ago) by tokuda
ENH: performance enhancement in image reslicing (by Steve)

Revision 14118  Directory Listing
Modified Mon Jul 12 22:12:07 2010 UTC (7 years, 2 months ago) by vrnova
ENH: merge changes in 3.7 into 3.6 per Ron's request

Revision 14067  Directory Listing
Modified Wed Jul 7 18:16:59 2010 UTC (7 years, 2 months ago) by tokuda
BUG: fix problem that transform couldn't exported as POSITION message.

Revision 14060  Directory Listing
Modified Tue Jul 6 15:42:30 2010 UTC (7 years, 2 months ago) by naucoin
BUG: port fix for transform logic leak from the trunk

Revision 14019  Directory Listing
Modified Fri Jul 2 19:55:18 2010 UTC (7 years, 2 months ago) by alexy
ENH: added scalars from tensor modes, added multiple labels in tractography/ROISelect

Revision 14015  Directory Listing
Modified Fri Jul 2 14:41:30 2010 UTC (7 years, 2 months ago) by hliu
BUG: made a shorter name for the default fiducial list.

Revision 14011  Directory Listing
Modified Thu Jul 1 21:27:45 2010 UTC (7 years, 2 months ago) by fedorov
BUG: add the code to register ScaleVersor3DTransform, which is used by
BRAINSFit, but not registered by ITK since it is in the Review

Revision 14009  Directory Listing
Modified Thu Jul 1 20:58:16 2010 UTC (7 years, 2 months ago) by hliu
BUG: fixed the issue of target name changes when switching among fiducial lists on the Targeting tab.

Revision 13988  Directory Listing
Modified Wed Jun 30 15:16:21 2010 UTC (7 years, 2 months ago) by hliu
BUG: fixed three segmentation faults associated with the widget navigation.

Revision 13975  Directory Listing
Modified Mon Jun 28 20:18:18 2010 UTC (7 years, 3 months ago) by hliu
ENH: added an option to turn on the secondary window.

Revision 13936  Directory Listing
Modified Thu Jun 24 15:27:48 2010 UTC (7 years, 3 months ago) by nhageman
ENH: Optimizize flag to CMakeLists.txt

Revision 13920  Directory Listing
Modified Wed Jun 23 13:17:08 2010 UTC (7 years, 3 months ago) by hjohnson
ENH:  Copied the script for extracting mediawiki docs from SEM xmls.

Revision 13918  Directory Listing
Modified Wed Jun 23 04:32:03 2010 UTC (7 years, 3 months ago) by pohl
BUG: Addressed issue 856 as well as ROI issue

Revision 13910  Directory Listing
Modified Tue Jun 22 17:06:48 2010 UTC (7 years, 3 months ago) by nhageman
ENH: Changes to XML and CMake files

Revision 13903  Directory Listing
Modified Tue Jun 22 11:58:59 2010 UTC (7 years, 3 months ago) by taox
BUG: bug000888. Handles cases where full path is given in outputVolume.

Revision 13902  Directory Listing
Modified Tue Jun 22 11:48:42 2010 UTC (7 years, 3 months ago) by taox
BUG: Fixed a minor bug with .nrrd file output.

Revision 13900  Directory Listing
Modified Tue Jun 22 11:41:06 2010 UTC (7 years, 3 months ago) by taox
BUG: bug888: wrong directory for output file when outputDirectory was not given. Also fixed problem with Siemens Mosaic format to .nrrd file.

Revision 13898  Directory Listing
Modified Tue Jun 22 11:20:42 2010 UTC (7 years, 3 months ago) by pohl
BUG: Correct values are now displayed in registration panel

Revision 13892  Directory Listing
Modified Mon Jun 21 20:05:35 2010 UTC (7 years, 3 months ago) by francois_budin
BUG:Reference image had to be a DTI if the module was used in Slicer3

Revision 13864  Directory Listing
Modified Sun Jun 20 04:31:34 2010 UTC (7 years, 3 months ago) by nhageman
ENH: Changes to Slicer3 CMakeLists.txt

Revision 13863  Directory Listing
Modified Sun Jun 20 04:25:47 2010 UTC (7 years, 3 months ago) by nhageman
ENH: Configuration Files

Revision 13862  Directory Listing
Modified Sun Jun 20 03:17:00 2010 UTC (7 years, 3 months ago) by nhageman
ENH: new branch to test Fluid Mechanics Tractography Module

Revision 13827  Directory Listing
Modified Wed Jun 16 17:29:43 2010 UTC (7 years, 3 months ago) by harveerar
ENH: Added support for setting up the ROI size

Revision 13826  Directory Listing
Modified Wed Jun 16 16:58:53 2010 UTC (7 years, 3 months ago) by harveerar
ENH: Added support for passing in label maps and weight maps for segmentation

Revision 13825  Directory Listing
Modified Wed Jun 16 16:58:44 2010 UTC (7 years, 3 months ago) by harveerar
ENH: Added support for passing in label maps and weight maps for segmentation

Revision 13824  Directory Listing
Modified Wed Jun 16 16:48:45 2010 UTC (7 years, 3 months ago) by harveerar
PERF: added roi based segmentation and support for returning and handling input gestures, weight images

Revision 13823  Directory Listing
Modified Wed Jun 16 16:41:42 2010 UTC (7 years, 3 months ago) by harveerar
PERF: added roi based segmentation and support for returning and handling input gestures, weight images

Revision 13817  Directory Listing
Modified Wed Jun 16 12:08:06 2010 UTC (7 years, 3 months ago) by taox
BUG: gradient vectors were scaled to unit vectors. This is wrong for multiple B-Value case. This fix also handles PET/SPECT images with larger dynamic range.

Revision 13815  Directory Listing
Modified Wed Jun 16 01:09:43 2010 UTC (7 years, 3 months ago) by lassoan
BUG: Merged ProstateNav module fixes and enhancements (model save/load, workspace display, usability improvements)

Revision 13799  Directory Listing
Modified Tue Jun 15 16:15:44 2010 UTC (7 years, 3 months ago) by clisle
BUG: stubbed out MRML scene change registration in meshing module to avoid crash potential before merging back into Slicer trunk. 

Revision 13795  Directory Listing
Modified Mon Jun 14 19:48:32 2010 UTC (7 years, 3 months ago) by naucoin
BUG: Updating help text: Control backtick jumps backward through the list

Revision 13794  Directory Listing
Modified Mon Jun 14 19:36:54 2010 UTC (7 years, 3 months ago) by pieper
BUG: merge from trunk (don't use control key to link cycling through fiducials)

Revision 13792  Directory Listing
Modified Mon Jun 14 18:53:25 2010 UTC (7 years, 3 months ago) by pohl
BUG: Transfered bug fixes from trunk to 3.6

Revision 13785  Directory Listing
Modified Mon Jun 14 13:41:14 2010 UTC (7 years, 3 months ago) by clisle
BUG: Improving MRML load & save without memory leaks during construction.  Removed problem in constructors of new meshing MRML nodes. Moved instantiation to Logic::SetMRMLScene().

Revision 13784  Directory Listing
Modified Mon Jun 14 01:50:37 2010 UTC (7 years, 3 months ago) by clisle
ENH: meshing image integration with MRML display node

Revision 13781  Directory Listing
Modified Sun Jun 13 19:42:33 2010 UTC (7 years, 3 months ago) by millerjv
BUG: reinstituting code that was removed in revision 12782. This code is needed for the case where a slice node is being modified through a mechanism other than through the SWidget

Revision 13777  Directory Listing
Modified Sun Jun 13 13:34:34 2010 UTC (7 years, 3 months ago) by clisle
ENH: branched off from trunk rev #13632 to check-in Meshing module changes without causing memory leaks on the  

Revision 13771  Directory Listing
Modified Fri Jun 11 20:45:05 2010 UTC (7 years, 3 months ago) by naucoin
BUG: porting svn 13739 from trunk, ensuring that color node icons show up as soon as the menu is populated

Revision 13763  Directory Listing
Modified Fri Jun 11 16:57:36 2010 UTC (7 years, 3 months ago) by alexy
ENH: Remove unused color and glyph options from fiber bundle display

Revision 13761  Directory Listing
Modified Fri Jun 11 13:01:22 2010 UTC (7 years, 3 months ago) by pieper
BUG: merge Luca's fix from trunk

Revision 13744  Directory Listing
Modified Thu Jun 10 19:06:00 2010 UTC (7 years, 3 months ago) by hayes
ENH: Changed to 3.6 from RC3

Revision 13743  Directory Listing
Modified Thu Jun 10 19:03:49 2010 UTC (7 years, 3 months ago) by hayes
ENH: Changed to 3.6 from RC3

Revision 13738  Directory Listing
Modified Thu Jun 10 16:28:54 2010 UTC (7 years, 3 months ago) by wjp@bwh.harvard.edu
ENH: new color icons for new generic color luts

Revision 13736  Directory Listing
Modified Thu Jun 10 15:57:22 2010 UTC (7 years, 3 months ago) by wjp@bwh.harvard.edu
ENH: image data for new generic color table icons

Revision 13732  Directory Listing
Modified Thu Jun 10 15:34:49 2010 UTC (7 years, 3 months ago) by pieper
BUG: merge fix to color box from trunk

Revision 13730  Directory Listing
Modified Thu Jun 10 15:22:19 2010 UTC (7 years, 3 months ago) by naucoin
BUG: bug 792, checking in generic color file and generic anatomy color file and using them as defaults, ported from trunk.

Revision 13724  Directory Listing
Modified Thu Jun 10 11:34:34 2010 UTC (7 years, 3 months ago) by pieper
BUG: remove unneeded warning message

Revision 13718  Directory Listing
Modified Wed Jun 9 21:48:18 2010 UTC (7 years, 3 months ago) by pieper
BUG: make new volume names match labels (merge from trunk)

Revision 13715  Directory Listing
Modified Wed Jun 9 20:32:19 2010 UTC (7 years, 3 months ago) by wjp@bwh.harvard.edu
BUG: initializing the 'pickable' state of seedwidgets when they are first placed based on mouse-mode. This prevets a hover event from stealing the mouse mode from 'persistent place' and giving it to 'pick' mode.

Revision 13711  Directory Listing
Modified Wed Jun 9 15:58:53 2010 UTC (7 years, 3 months ago) by wjp@bwh.harvard.edu
BUG: View control GUI now keeps its attachment to the Active Viewer's Interactor Style, so it can process events such as mouse up,down,move.

Revision 13707  Directory Listing
Modified Wed Jun 9 03:10:56 2010 UTC (7 years, 3 months ago) by wjp@bwh.harvard.edu
BUG: catching when cache directory is dirty due to files not being cleared as expected

Revision 13706  Directory Listing
Modified Wed Jun 9 01:20:26 2010 UTC (7 years, 3 months ago) by hjohnson
STYLE:  Fixed documentation bug.

Revision 13698  Directory Listing
Modified Tue Jun 8 18:40:42 2010 UTC (7 years, 3 months ago) by alexy
ENH: changed fiducial seeding to tubes by default

Revision 13690  Directory Listing
Modified Tue Jun 8 16:20:59 2010 UTC (7 years, 3 months ago) by naucoin
BUG: turn off managing the cursor, the cursor will still change to a hand, but so far it seems like it will only do so when you can pick up and move the handles

Revision 13684  Directory Listing
Modified Tue Jun 8 12:42:07 2010 UTC (7 years, 3 months ago) by lassoan
BUG: Fixed type in 13683 commit

Revision 13683  Directory Listing
Modified Tue Jun 8 12:32:32 2010 UTC (7 years, 3 months ago) by lassoan
COMP: Fixed compilation error (when CMake was not re-built, then tcl-build directory was created in Slicer3 directory instead of Slicer3-lib)

Revision 13670  Directory Listing
Modified Mon Jun 7 18:08:52 2010 UTC (7 years, 3 months ago) by naucoin
BUG: don't return the smart pointer from the load colour call, return a 0/1 flag and check it to avoid the temptation to delete the returned node and cause a crash (related to bug 792)

Revision 13668  Directory Listing
Modified Mon Jun 7 15:10:52 2010 UTC (7 years, 3 months ago) by hjohnson
ENH:  Addressing feature requests http://na-mic.org/Mantis/view.php?id=870 and http://na-mic.org/Mantis/view.php?id=869 to make the graphical user interface easier to use.  ENH:  Also made the documentation more clear.



Revision 13666  Directory Listing
Modified Mon Jun 7 12:55:31 2010 UTC (7 years, 3 months ago) by pieper
BUG: make external progress window disappear if no update arrives in 2 seconds (which can happen if slicer crashes)

Revision 13664  Directory Listing
Modified Mon Jun 7 03:35:37 2010 UTC (7 years, 3 months ago) by alexy
ENH: changed TractographySeeding module to send to Fiberbundle module for display property

Revision 13654  Directory Listing
Modified Sun Jun 6 00:38:54 2010 UTC (7 years, 3 months ago) by vrnova
ENH: recent patches in 3.7 alpha.

Revision 13653  Directory Listing
Modified Sat Jun 5 14:51:07 2010 UTC (7 years, 3 months ago) by pieper
BUG: merge bug fix from trunk for window level estimation include int-like scalar types in auto estimation

Revision 13647  Directory Listing
Modified Fri Jun 4 22:53:47 2010 UTC (7 years, 3 months ago) by fedorov
BUG: the name for the registration module has changed

Revision 13639  Directory Listing
Modified Fri Jun 4 19:13:01 2010 UTC (7 years, 3 months ago) by naucoin
BUG: lock the 2d rulers as well as the 3d ones

Revision 13637  Directory Listing
Modified Fri Jun 4 17:58:54 2010 UTC (7 years, 3 months ago) by pieper
BUG: merge bug fis from trunk for window level estimation of non-int volumes

Revision 13635  Directory Listing
Modified Fri Jun 4 17:22:03 2010 UTC (7 years, 3 months ago) by wjp@bwh.harvard.edu
BUG: adding missing acknowledgements to welcome, noticed by sonia

Revision 13631  Directory Listing
Modified Fri Jun 4 15:09:59 2010 UTC (7 years, 3 months ago) by hayes
ENH: Changing version to RC3

Revision 13630  Directory Listing
Modified Fri Jun 4 15:04:16 2010 UTC (7 years, 3 months ago) by hayes
ENH: Changing version to RC3

Revision 13629  Directory Listing
Modified Fri Jun 4 15:02:05 2010 UTC (7 years, 3 months ago) by hayes
ENH: Changing version to RC3

Revision 13626  Directory Listing
Modified Fri Jun 4 07:26:49 2010 UTC (7 years, 3 months ago) by pohl
BUG: Now correctly works when compiled with --pack flag

Revision 13622  Directory Listing
Modified Fri Jun 4 02:40:31 2010 UTC (7 years, 3 months ago) by hjohnson
ENH:  Made labels shorter so that they render bettter in the image.

Revision 13618  Directory Listing
Modified Thu Jun 3 23:13:26 2010 UTC (7 years, 3 months ago) by pieper
COMP: switch to using the SlicerVTK git mirror of vtk 5.6 that contains patches needed by slicer

Revision 13617  Directory Listing
Modified Thu Jun 3 21:39:23 2010 UTC (7 years, 3 months ago) by pieper
BUG: merge fixes from trunk for issues dicoverd by Sonia

Revision 13614  Directory Listing
Modified Thu Jun 3 18:41:54 2010 UTC (7 years, 3 months ago) by hjohnson
ENH: In response to numerous constructive critisms of the newly added suite of BRAINSTools, a code review was performed in order to make the applications work consistenently and with similar user interfaces.

Summary of ChangeLog:
-Instrumented xml files so that moving images are properly associated with their transforms in the Slicer3 MRML Interface.
-Made command line arguments consistent across tools for specifying images, transforms, similar parameters.
-Hid many advanced command line arguments from standard user interface when used from Slicer3
-Improved documentation of command line arguments to describe better what the intended purpose, and restrictions on use are.
-Added common set of image resample/warping options across all tools so that all tools provide common interface for choosing outputPixelType and interpolation mode
-Fixed reading and writing of transforms to use a common read/write paradigm, to be consistent across all tools, and to be compatible with Slicer3 (i.e. Write out Bspline transforms with the bulk transform given second).
-Increased code coverage by merging common functionality that existed in each tool separately into the BRAINSCommonLIb, thus removing code, and ensuring that exactly the same behavior was done across all tools.
-Worked around bug where ITK LSBFGSB optimizer does not properly return the number of iterations performed,  This improperly reported that Bspline registrations were never done when doing a Bspline registration alone.
-Improved source code documentation for commonly used functions.
-Removed obsolete code to improve code coverage
-Added feature to BRAINSResample that allows grid lines to be created in the image.  ENH:  Made test cases more tolerant of slight image difference due to numerical precision.
-Fixed bug in BRAINSResample regarding the output image type

Revision 13591  Directory Listing
Modified Wed Jun 2 16:25:32 2010 UTC (7 years, 3 months ago) by hliu
BUG: Fix registration error due to modification in newmat/ZLinAlg.cxx

Revision 13582  Directory Listing
Modified Tue Jun 1 20:08:03 2010 UTC (7 years, 3 months ago) by naucoin
BUG: bring the 2d fiducials to match the 3d ones wrt locking when placing

Revision 13579  Directory Listing
Modified Tue Jun 1 19:26:25 2010 UTC (7 years, 3 months ago) by hayes
ENH: Removing BRAINS from extensions

Revision 13578  Directory Listing
Modified Tue Jun 1 18:35:16 2010 UTC (7 years, 3 months ago) by pieper
COMP: merge change from branch to disable python except in restricted case of visual studio 2008 on widows XP

Revision 13576  Directory Listing
Modified Tue Jun 1 16:09:38 2010 UTC (7 years, 3 months ago) by naucoin
BUG: fixing the logic for when the measurements module isn't found

Revision 13559  Directory Listing
Modified Fri May 28 23:55:50 2010 UTC (7 years, 4 months ago) by wjp@bwh.harvard.edu
BUG: cleaning up dead comments etc.

Revision 13551  Directory Listing
Modified Fri May 28 18:46:15 2010 UTC (7 years, 4 months ago) by wjp@bwh.harvard.edu
BUG: making sure to track changes in mouse mode after a scene is loaded.

Revision 13546  Directory Listing
Modified Fri May 28 16:37:11 2010 UTC (7 years, 4 months ago) by alexy
BUG_FIXED: don't update references while closing the scene. May cause crash if widgets still observing nodes.

Revision 13545  Directory Listing
Modified Fri May 28 15:24:42 2010 UTC (7 years, 4 months ago) by millerjv
BUG: merged patch from trunk to release branch 13264:13544

Revision 13542  Directory Listing
Modified Fri May 28 14:30:02 2010 UTC (7 years, 4 months ago) by naucoin
BUG: change a warning macro to a debug, the code is correctly bouncing out of an update call if it was triggered while within it

Revision 13541  Directory Listing
Modified Fri May 28 13:01:46 2010 UTC (7 years, 4 months ago) by pieper
BUG: merge bug fix from trunk

Revision 13539  Directory Listing
Modified Fri May 28 12:41:24 2010 UTC (7 years, 4 months ago) by pieper
STYLE: avoid getting a vtk error message when loading scene

Revision 13537  Directory Listing
Modified Fri May 28 12:27:19 2010 UTC (7 years, 4 months ago) by pieper
STYLE: clean up message

Revision 13532  Directory Listing
Modified Thu May 27 20:15:54 2010 UTC (7 years, 4 months ago) by wjp@bwh.harvard.edu
ENH: Adding as per Ron's request, a hot key to toggle between persistent place and view transform mouse modes

Revision 13522  Directory Listing
Modified Thu May 27 16:44:07 2010 UTC (7 years, 4 months ago) by pieper
BUG: merge error checking on tensor types from 3.6 branch

Revision 13520  Directory Listing
Modified Thu May 27 16:38:07 2010 UTC (7 years, 4 months ago) by wjp@bwh.harvard.edu
BUG: fixing mouse modes so that auto-picking doesn't interrupt the placement of fiducials (or other 3D widgets.)

Revision 13516  Directory Listing
Modified Thu May 27 16:24:55 2010 UTC (7 years, 4 months ago) by naucoin
BUG: provide api to lock widgets from 3d mouse interactions

Revision 13514  Directory Listing
Modified Thu May 27 15:31:37 2010 UTC (7 years, 4 months ago) by hjohnson
ENH: Removed unnecessary file

Revision 13507  Directory Listing
Modified Wed May 26 18:29:15 2010 UTC (7 years, 4 months ago) by naucoin
BUG: fixing bug 850, wasn't setting the full path on the file list members when reading in from xml, so saving the scene wasn't updating the file list members with the correct relative paths.

Revision 13504  Directory Listing
Modified Wed May 26 13:05:14 2010 UTC (7 years, 4 months ago) by hjohnson
ENH:  Updated code to clean up redundant code, and to address end-user requests for simplified interfaces.

Revision 13499  Directory Listing
Modified Wed May 26 11:58:33 2010 UTC (7 years, 4 months ago) by pieper
BUG: fix string formating warning when pixel values are empty

Revision 13488  Directory Listing
Modified Tue May 25 19:47:20 2010 UTC (7 years, 4 months ago) by naucoin
BUG: when extended with TclSampleScriptedModule, exit was failing due to the gui and logic not beign set up right, so avoid calling methods on invalid classes

Revision 13487  Directory Listing
Modified Tue May 25 19:43:20 2010 UTC (7 years, 4 months ago) by alexy
ENH: fixed help link

Revision 13485  Directory Listing
Modified Tue May 25 19:36:14 2010 UTC (7 years, 4 months ago) by pieper
BUG: merge fixes from trunk to avoid runtime warnings about bad pixel formats

Revision 13483  Directory Listing
Modified Tue May 25 19:28:36 2010 UTC (7 years, 4 months ago) by alexy
ENH: fixed help link

Revision 13482  Directory Listing
Modified Tue May 25 19:15:23 2010 UTC (7 years, 4 months ago) by naucoin
BUG: check for the case where the module name is less than 7 characters long. Bug 852

Revision 13479  Directory Listing
Modified Tue May 25 17:42:58 2010 UTC (7 years, 4 months ago) by hayes
ENH: Changing version to RC2

Revision 13478  Directory Listing
Modified Tue May 25 17:10:56 2010 UTC (7 years, 4 months ago) by pieper
BUG: be sure to update the annotation values even if annotation strings are not currently visible

Revision 13477  Directory Listing
Modified Tue May 25 15:43:26 2010 UTC (7 years, 4 months ago) by hayes
ENH: Changing version to RC2

Revision 13473  Directory Listing
Modified Tue May 25 11:48:19 2010 UTC (7 years, 4 months ago) by pieper
BUG: update annotations for seeds when mouse if over the seed

Revision 13466  Directory Listing
Modified Mon May 24 22:56:31 2010 UTC (7 years, 4 months ago) by hjohnson
COMP:  Quick fix to remove unnecessary testing that was causing failures across platforms.  A better solution is being worked on and tested in the trunk.

Revision 13455  Directory Listing
Modified Mon May 24 15:12:26 2010 UTC (7 years, 4 months ago) by naucoin
BUG: create a lib and install merge models

Revision 13454  Directory Listing
Modified Mon May 24 15:06:39 2010 UTC (7 years, 4 months ago) by naucoin
BUG: fix doc link

Revision 13443  Directory Listing
Modified Fri May 21 21:03:26 2010 UTC (7 years, 4 months ago) by wjp@bwh.harvard.edu
BUG: Debugging multiple cameras -- fixing creation of new camera nodes when a view node has none, and switching active cameras. Dual 3D view may not be working properly yet.

Revision 13442  Directory Listing
Modified Fri May 21 20:58:01 2010 UTC (7 years, 4 months ago) by demian
ENH: Regorganization of the Diffusion and Tractography related modules and improvement of their documentation

Revision 13441  Directory Listing
Modified Fri May 21 20:22:32 2010 UTC (7 years, 4 months ago) by francois_budin
BUG: The file transform extension has to be .txt

Revision 13435  Directory Listing
Modified Fri May 21 11:17:17 2010 UTC (7 years, 4 months ago) by wjp@bwh.harvard.edu
BUG: getting rid of cdash complaints of unused variable

Revision 13434  Directory Listing
Modified Fri May 21 11:07:42 2010 UTC (7 years, 4 months ago) by wjp@bwh.harvard.edu
BUG: tracking changes made to the trunk on adding and switching between cameras

Revision 13432  Directory Listing
Modified Fri May 21 01:42:03 2010 UTC (7 years, 4 months ago) by hjohnson
ENH:  Added improved documentation, simplified user interface, improved testing, and merged across all versions of the tools.

Revision 13421  Directory Listing
Modified Thu May 20 15:25:05 2010 UTC (7 years, 4 months ago) by fedorov
BUG: memory deallocation is not done in desctructor, need explicit call

Revision 13414  Directory Listing
Modified Wed May 19 18:28:22 2010 UTC (7 years, 4 months ago) by naucoin
BUG: remove debugging print outs

Revision 13412  Directory Listing
Modified Wed May 19 17:45:20 2010 UTC (7 years, 4 months ago) by wjp@bwh.harvard.edu
BUG: changed FetchMI's download behavior to do a Load rather than import of a scene so Camera and other nodes would be restored properly

Revision 13411  Directory Listing
Modified Wed May 19 15:25:08 2010 UTC (7 years, 4 months ago) by wjp@bwh.harvard.edu
BUG: not checking metadata upon Enter() unless server is selected and closing 'new tag' window after values are set

Revision 13396  Directory Listing
Modified Mon May 17 21:30:57 2010 UTC (7 years, 4 months ago) by naucoin
ENH: add info about how to create ruler from fids to help panel

Revision 13393  Directory Listing
Modified Mon May 17 21:01:05 2010 UTC (7 years, 4 months ago) by naucoin
BUG: fix link to docs

Revision 13383  Directory Listing
Modified Mon May 17 13:12:13 2010 UTC (7 years, 4 months ago) by fedorov
BUG: register ScaleVersor3D transform (fix for bug #842)

Revision 13374  Directory Listing
Modified Fri May 14 18:07:49 2010 UTC (7 years, 4 months ago) by clisle
BUG: fix typo on build logic for MainMirrorUnstructuredGridCellTest 

Revision 13373  Directory Listing
Modified Fri May 14 15:40:44 2010 UTC (7 years, 4 months ago) by millerjv
ENH: move the extension for the Slicer 3.6 release to a branch of the EMClustering module

Revision 13344  Directory Listing
Modified Wed May 12 22:00:46 2010 UTC (7 years, 4 months ago) by millerjv
BUG: Merge onto branch 13264:13340

Revision 13331  Directory Listing
Modified Tue May 11 23:35:15 2010 UTC (7 years, 4 months ago) by pieper
BUG: merge fix from trunk

Revision 13320  Directory Listing
Modified Tue May 11 19:28:56 2010 UTC (7 years, 4 months ago) by alexy
BUG_FIXED: 839 removed recursive loops causes in the Viewer by UpdateAxis methods

Revision 13317  Directory Listing
Modified Tue May 11 17:41:30 2010 UTC (7 years, 4 months ago) by pieper
BUG: remove unused variable (merge from trunk)

Revision 13314  Directory Listing
Modified Tue May 11 15:26:30 2010 UTC (7 years, 4 months ago) by finetjul
ENH: Merge trunk on Slicer4: rev13302 -> rev13313

Revision 13312  Directory Listing
Modified Tue May 11 14:21:21 2010 UTC (7 years, 4 months ago) by alexy
BUG_FIXED:
Fixed VolRen ROI fit to volume for the case when volume was outside the original ROI range

Revision 13309  Directory Listing
Modified Mon May 10 23:18:51 2010 UTC (7 years, 4 months ago) by finetjul
ENH: Merge trunk on Slicer4: rev13208 -> rev13302

Revision 13303  Directory Listing
Modified Mon May 10 20:08:19 2010 UTC (7 years, 4 months ago) by pieper
BUG: fix logic for bounds checking - don't try to analyze data with single dicom volume containing entire series (fix for bug reported by Andras and Andriy)

Revision 13301  Directory Listing
Modified Mon May 10 17:16:39 2010 UTC (7 years, 4 months ago) by partyd
COMP: merge in using vtk mirror from trunk. STYLE: Clean up script removing unnecessary comments etc.

Revision 13298  Directory Listing
Modified Sat May 8 21:45:17 2010 UTC (7 years, 4 months ago) by hayes
ENH: Changed version to 3.6 RC1

Revision 13296  Directory Listing
Modified Sat May 8 20:54:57 2010 UTC (7 years, 4 months ago) by wjp@bwh.harvard.edu
BUG: bringing welcome module text up to date (didn't include measurements module)

Revision 13295  Directory Listing
Modified Sat May 8 20:52:16 2010 UTC (7 years, 4 months ago) by wjp@bwh.harvard.edu
BUG: bringing welcome module images up to date

Revision 13289  Directory Listing
Modified Fri May 7 21:31:48 2010 UTC (7 years, 4 months ago) by hjohnson
ENH:  Changed tests to use long flags to avoid problem with running tests under windows.

Revision 13287  Directory Listing
Modified Fri May 7 20:56:00 2010 UTC (7 years, 4 months ago) by hliu
ENH: added logos into the Acknowledgement section.

Revision 13283  Directory Listing
Modified Fri May 7 16:34:01 2010 UTC (7 years, 4 months ago) by lassoan
ENH: Added icons to ProstateNav acknowledgements panel

Revision 13280  Directory Listing
Modified Fri May 7 13:16:29 2010 UTC (7 years, 4 months ago) by pieper
BUG: merge testing fix from trunk

Revision 13278  Directory Listing
Modified Fri May 7 11:41:13 2010 UTC (7 years, 4 months ago) by hjohnson
ENH:0000829:  Addressing feature enhancment http://www.na-mic.org/Bug/view.php?id=829 submitted by fedorov.  STYLE:  Also cleaned up xml files to have better rendered interfaces.

Revision 13274  Directory Listing
Modified Thu May 6 21:28:33 2010 UTC (7 years, 4 months ago) by pieper
STYLE: merge new documentation from the trunk for segmentation welcome module

Revision 13270  Directory Listing
Modified Thu May 6 19:50:45 2010 UTC (7 years, 4 months ago) by pieper
BUG: only specify the build subdirectory on windows (where it will be Debug, Release, RelWithDebInfo, etc) otherwise leave blank

Revision 13269  Directory Listing
Modified Thu May 6 19:10:22 2010 UTC (7 years, 4 months ago) by pieper
COMP: merge compile warning fix from trunk

Revision 13266  Directory Listing
Modified Thu May 6 15:06:44 2010 UTC (7 years, 4 months ago) by naucoin
BUG: update title with branch version

Revision 13265  Directory Listing
Modified Thu May 6 15:04:24 2010 UTC (7 years, 4 months ago) by naucoin
BUG: change the slicer3 tag to check out the 3.6 branch

Revision 13264  Directory Listing
Modified Thu May 6 14:12:54 2010 UTC (7 years, 4 months ago) by pieper
ENH: creating release branche for Slicer-3-6

Revision 13228  Directory Listing
Modified Tue May 4 21:29:54 2010 UTC (7 years, 4 months ago) by jcfr
ENH: Update qSlicerCLIModuleUIHelper to make use of ctkDirectoryButton

Note also that a ctkFile(s)Button  widget would also be helpful in the
case of a file tag.

Revision 13227  Directory Listing
Modified Tue May 4 21:29:51 2010 UTC (7 years, 4 months ago) by jcfr
ENH: Added method moduleType() to qSlicerCLIModule and its derived class

In qSlicerCLIModule::setXmlModuleDescription, the module type is then set
on the ModuleDescription object.

Later on, after the user click "Apply" button, a valid ModuleDescription
object is now used within the vtkSlicerCLIModuleLogic class

Revision 13226  Directory Listing
Modified Tue May 4 21:24:36 2010 UTC (7 years, 4 months ago) by jcfr
ENH: Added command line module CLIModule4Test

This module is used to test the command line UI generator

Revision 13225  Directory Listing
Modified Tue May 4 21:24:31 2010 UTC (7 years, 4 months ago) by jcfr
STYLE: In miAnnotation* classes, rename "ctk includes" into "CTK includes"

Revision 13224  Directory Listing
Modified Tue May 4 21:24:27 2010 UTC (7 years, 4 months ago) by jcfr
ENH: Removed unused vtkSlicerViewWidget class

Revision 13223  Directory Listing
Modified Tue May 4 21:24:23 2010 UTC (7 years, 4 months ago) by jcfr
BUG: Update qSlicerTransformsModule.ui to consider the new CTK widgets

Revision 13222  Directory Listing
Modified Tue May 4 21:24:19 2010 UTC (7 years, 4 months ago) by jcfr
ENH: Added convenient module MRMLTree

This module allow to visualize which Node are currently loaded in the scene

Revision 13221  Directory Listing
Modified Tue May 4 21:24:12 2010 UTC (7 years, 4 months ago) by jcfr
STYLE: Update commend and indent in qSlicerCLIModule* classes

Revision 13220  Directory Listing
Modified Tue May 4 21:24:08 2010 UTC (7 years, 4 months ago) by jcfr
ENH: Implement action FildAddData, LoadScene and ImportScene in SlicerQT

Revision 13212  Directory Listing
Modified Tue May 4 19:32:15 2010 UTC (7 years, 4 months ago) by finetjul
COMP: qCTKWidgets and qVTKWidgets have been moved into CTK. miAnnotation module was using the previous notations.

Revision 13211  Directory Listing
Modified Tue May 4 19:30:14 2010 UTC (7 years, 4 months ago) by finetjul
COMP: vtkSlicerColorLogic handles the luts as statics methods.

Revision 13210  Directory Listing
Modified Tue May 4 17:30:05 2010 UTC (7 years, 4 months ago) by finetjul
ENH: Merge trunk on Slicer4: rev12778 -> rev13208

Revision 13197  Directory Listing
Modified Mon May 3 23:56:53 2010 UTC (7 years, 4 months ago) by jcfr
ENH: In qSlicerCLIModuleWidget, UI is updated with default value when a commandline module node is created

The "default" button is also functional.

Revision 13196  Directory Listing
Modified Mon May 3 23:56:49 2010 UTC (7 years, 4 months ago) by jcfr
STYLE: Fix comment misspell in qMRMLNodeComboBox

Revision 13195  Directory Listing
Modified Mon May 3 23:56:46 2010 UTC (7 years, 4 months ago) by jcfr
ENH: In qSlicerCLIModuleWidget , the Ui is now updated when the command line module node is modified

Revision 13194  Directory Listing
Modified Mon May 3 23:56:42 2010 UTC (7 years, 4 months ago) by jcfr
ENH: In qSlicerCLIModuleUIHelper::updateMRMLCommandLineModuleNode, emit Node modified event when required

Revision 13190  Directory Listing
Modified Mon May 3 22:03:46 2010 UTC (7 years, 4 months ago) by jcfr
BUG: Update SuperBuild/CMakeLists.txt to pass PYTHON_EXECUTABLE variable to Slicer

Also added FIND_PACKAGE(PythonInterp REQUIRED) to Base/Python/CMakeLists.txt

Revision 13189  Directory Listing
Modified Mon May 3 22:03:42 2010 UTC (7 years, 4 months ago) by jcfr
BUG: Add missing CTKScriptingPython{Core,Widgets} dependencies in QT{Core,GUI}

Revision 13188  Directory Listing
Modified Mon May 3 22:03:38 2010 UTC (7 years, 4 months ago) by jcfr
ENH: Removed extra comment and rename variable in QT{Base,Core,CLI, GUI}/CMakeLists.txt

Revision 13187  Directory Listing
Modified Mon May 3 22:03:33 2010 UTC (7 years, 4 months ago) by jcfr
ENH: Added signal "nodeAddedByUser" to qMRMLNodeSelector and qMRMLNodeComboBox

Revision 13186  Directory Listing
Modified Mon May 3 22:03:29 2010 UTC (7 years, 4 months ago) by jcfr
ENH: Update comment to doxygen style - Change "Overloaded" into "\Overload"

Revision 13182  Directory Listing
Modified Mon May 3 20:38:38 2010 UTC (7 years, 4 months ago) by finetjul
ENH: qSlicerSaveDataDialog: support fileFormat + support selectModified[Scene]Data()

Revision 13169  Directory Listing
Modified Mon May 3 16:30:04 2010 UTC (7 years, 4 months ago) by finetjul
ENH: Improve qSlicerSaveDataDialog

Revision 13168  Directory Listing
Modified Mon May 3 16:29:59 2010 UTC (7 years, 4 months ago) by finetjul
ENH: Add qSlicerSceneIO

Revision 13144  Directory Listing
Modified Fri Apr 30 21:19:34 2010 UTC (7 years, 4 months ago) by finetjul
ENH: Speed improvement. Don't refresh when the scene is loading.

Revision 13143  Directory Listing
Modified Fri Apr 30 21:19:29 2010 UTC (7 years, 4 months ago) by finetjul
ENH: Speed improvement: Use iterator to iterate over a scene

Iterators are faster than querying an object by its index.

Revision 13142  Directory Listing
Modified Fri Apr 30 21:19:25 2010 UTC (7 years, 4 months ago) by finetjul
BUG: Fix speed issues when loading a scene

From 2 mins to 10 secs with a scene of 1000 models.

Revision 13093  Directory Listing
Modified Thu Apr 29 21:11:47 2010 UTC (7 years, 4 months ago) by jcfr
ENH: Update qSlicerCLIModuleWidget to use qSlicerCLIModuleUIHelper

Revision 13092  Directory Listing
Modified Thu Apr 29 21:11:43 2010 UTC (7 years, 4 months ago) by jcfr
BUG: In qSlicerCoreIOManager::registerIO, make sure the IO object is re-parented

That ensures the destructor of qSlicerIO is called and fix a memory leaks.

Revision 13077  Directory Listing
Modified Thu Apr 29 17:03:02 2010 UTC (7 years, 5 months ago) by jcfr
STYLE: Fix typo error in qSlicerCLIModuleWidget comments

Revision 13076  Directory Listing
Modified Thu Apr 29 17:02:57 2010 UTC (7 years, 5 months ago) by jcfr
BUG: Fix qSlicerCLIModule.ui - qMRMLNodeCombBox extends from QComboBox not QWidget

Revision 13060  Directory Listing
Modified Thu Apr 29 14:24:02 2010 UTC (7 years, 5 months ago) by jcfr
ENH: In SuperBuild, add an extra step named Slicer3-Configure

The external project Slicer3-Configure depends on ${slicer_DEPENDS}
The external project Slicer3 depends on "Slicer3-Configure"

Revision 13059  Directory Listing
Modified Thu Apr 29 14:23:59 2010 UTC (7 years, 5 months ago) by jcfr
STYLE: Remove extra lines in SuperBuild/CMakeLists.txt

Revision 13058  Directory Listing
Modified Thu Apr 29 14:23:56 2010 UTC (7 years, 5 months ago) by jcfr
BUG: In qSlicerCoreApplication, the use of QSharedPointer ensure that qSlicerCoreIOManager is destroyed

That also fixes the segmentation fault related to startTimer/QThread
which was happening when the user exits the application.

Revision 13009  Directory Listing
Modified Wed Apr 28 22:46:30 2010 UTC (7 years, 5 months ago) by jcfr
BUG: In Slicer3.cxx, fix warning: suggest explicit braces to avoid ambiguous ‘else’

Revision 13008  Directory Listing
Modified Wed Apr 28 22:46:26 2010 UTC (7 years, 5 months ago) by jcfr
ENH: Modules are now registered using a platform independent name

Revision 13000  Directory Listing
Modified Wed Apr 28 21:00:32 2010 UTC (7 years, 5 months ago) by finetjul
ENH: Preliminary work to add qSlicerSaveDataDialog, a Save Data dialog.

Revision 12997  Directory Listing
Modified Wed Apr 28 20:55:29 2010 UTC (7 years, 5 months ago) by finetjul
ENH: Add more support for IO writers

Revision 12996  Directory Listing
Modified Wed Apr 28 20:53:44 2010 UTC (7 years, 5 months ago) by finetjul
BUG: qSlicerVolumesIO was trying to get the Volumes module with its title instead of its name.

Revision 12995  Directory Listing
Modified Wed Apr 28 20:52:45 2010 UTC (7 years, 5 months ago) by finetjul
BUG: qSlicerModelsIO was handling as a Volume reader.

Revision 12984  Directory Listing
Modified Wed Apr 28 19:44:59 2010 UTC (7 years, 5 months ago) by jcfr
STYLE: In vtkSlicerApplicationGUI, added bracket following gcc suggestion

The following warning was displayed:
  suggest explicit braces to avoid ambiguous

Revision 12983  Directory Listing
Modified Wed Apr 28 19:41:38 2010 UTC (7 years, 5 months ago) by jcfr
BUG: In qSlicerCoreIOManager, rename loadNodes into loadNodesAndGetFirst

Revision 12982  Directory Listing
Modified Wed Apr 28 19:33:56 2010 UTC (7 years, 5 months ago) by jcfr
ENH: Document and review class qSlicerCoreIOManager

Rename function loadNode into loadNodesAndGetFirst

In function 'loadNodes', instead of returning false when the count of loaded nodes
is zero, it now returns false only if no reader manage to read the
given file.

Revision 12970  Directory Listing
Modified Wed Apr 28 15:56:27 2010 UTC (7 years, 5 months ago) by jcfr
BUG: In qSlicerMainWindowCore, exclude PythonQt specific header using #ifdef Slicer3_PYTHONQT

Revision 12969  Directory Listing
Modified Wed Apr 28 15:56:24 2010 UTC (7 years, 5 months ago) by jcfr
BUG: In vtkProstateNavConfigure.h.in, change @ProstateNav_WC_REVISION@ into @ProstateNav_REVISION@

That will prevent compilation to failed when slicer is checkout using git-svn

Revision 12947  Directory Listing
Modified Tue Apr 27 18:18:40 2010 UTC (7 years, 5 months ago) by jcfr
ENH: Remove qCTKWidgets and qVTKWidgets library

Also added qCTKFlowLayout to qMRMLWidgets

Revision 12943  Directory Listing
Modified Mon Apr 26 23:37:03 2010 UTC (7 years, 5 months ago) by jcfr
ENH: Update SuperBuild/CMakeLists.txt, added option allowing to configure CTK properly.

Revision 12942  Directory Listing
Modified Mon Apr 26 23:36:59 2010 UTC (7 years, 5 months ago) by jcfr
STYLE: In qSlicerBaseQTBasePythonQtDecorators, change "QT" to "Qt", "qCTK" to "CTK"

Revision 12941  Directory Listing
Modified Mon Apr 26 23:36:56 2010 UTC (7 years, 5 months ago) by jcfr
ENH: Remove unused qCTKWidgets/Resources/{UI,Icons,qCTKWidgets.qrc} files,

Revision 12880  Directory Listing
Modified Fri Apr 23 15:08:33 2010 UTC (7 years, 5 months ago) by jcfr
BUG: Update QTModules to consider the CTK widgets instead of the old qCTK ones

Revision 12879  Directory Listing
Modified Fri Apr 23 14:59:21 2010 UTC (7 years, 5 months ago) by jcfr
ENH: Remove most of the qCTKWidgets and use the CTK ones instead.

Revision 12876  Directory Listing
Modified Thu Apr 22 22:05:52 2010 UTC (7 years, 5 months ago) by jcfr
ENH: Remove qCTK{ButtonGroup, CheckableHeaderView, CheckBoxPixmaps, CollapsibleButton, CollapsibleGroupBox} from Slicer and use CTK ones.

Revision 12875  Directory Listing
Modified Thu Apr 22 22:05:37 2010 UTC (7 years, 5 months ago) by jcfr
ENH: Remove qCTKTestApplication and qCTKAddRemoveComboBox from Slicer and use CTK ones.

Revision 12874  Directory Listing
Modified Thu Apr 22 22:05:31 2010 UTC (7 years, 5 months ago) by jcfr
ENH: Remove qCTKColorPickerButton and qCTKColorPickerButtonPlugin

Revision 12869  Directory Listing
Modified Thu Apr 22 19:10:44 2010 UTC (7 years, 5 months ago) by jcfr
ENH: Updated Designer.py.in to account for CTK_QTDESIGNERPLUGINS_DIR variable

Revision 12861  Directory Listing
Modified Wed Apr 21 21:42:44 2010 UTC (7 years, 5 months ago) by jcfr
ENH: Remove qVTKCommandOptions and used ctkVTKCommandOptions from CTK

Revision 12857  Directory Listing
Modified Wed Apr 21 20:13:36 2010 UTC (7 years, 5 months ago) by jcfr
BUG: Fix SuperBuild/CMakeLists.txt, VTK_DIR was improperly passed to CTK external project.

Revision 12856  Directory Listing
Modified Wed Apr 21 20:13:33 2010 UTC (7 years, 5 months ago) by jcfr
BUG: Fix SuperBuild/CMakeLists.txt, make sure directory are PATH and not FILEPATH

Revision 12855  Directory Listing
Modified Wed Apr 21 20:13:27 2010 UTC (7 years, 5 months ago) by jcfr
ENH: Remove qCTKPimpl.h, qVTKObject* and qVTKObjectMatrix and use the CTK equivalent.

This implied to update all headers and corresponding implementation file including qCTKPimpl.h.

Revision 12854  Directory Listing
Modified Wed Apr 21 19:58:09 2010 UTC (7 years, 5 months ago) by finetjul
COMP: remove MRML dependency in qVTKWidgets

Revision 12837  Directory Listing
Modified Tue Apr 20 19:18:55 2010 UTC (7 years, 5 months ago) by jcfr
BUG: Fix qMRMLListWidget - Use "ctkModelTester* tester" instead of "ctkModelTester tester"

Revision 12836  Directory Listing
Modified Tue Apr 20 19:18:50 2010 UTC (7 years, 5 months ago) by jcfr
ENH: Removed qCTKBinaryFileDescriptor from qCTKWidgets.

Revision 12835  Directory Listing
Modified Tue Apr 20 19:18:44 2010 UTC (7 years, 5 months ago) by jcfr
ENH: Use ctkSettings from CTK - Removed qCTKSettings

Revision 12834  Directory Listing
Modified Tue Apr 20 17:33:23 2010 UTC (7 years, 5 months ago) by jcfr
BUG: Fix main CMakeLists.txt - FindCTK is now invoked when Slicer3_USE_QT is ON

Revision 12831  Directory Listing
Modified Tue Apr 20 16:52:17 2010 UTC (7 years, 5 months ago) by jcfr
ENH: Remove qCTKModelTester and use ctkModelTester from CTK

Revision 12829  Directory Listing
Modified Tue Apr 20 16:18:18 2010 UTC (7 years, 5 months ago) by jcfr
ENH: Removed qCTKMatrixWidget and used ctkMatrixWidget from CTK

Revision 12826  Directory Listing
Modified Tue Apr 20 15:38:16 2010 UTC (7 years, 5 months ago) by jcfr
ENH: qCTKUtils removed from qCTKWidgets. ctkUtils from CTK is now used.

Revision 12823  Directory Listing
Modified Mon Apr 19 23:51:58 2010 UTC (7 years, 5 months ago) by jcfr
ENH: qCTKAbstractFactory* classes have been removed from qCTKWidgets. The ctkAbstractFactory* class from CTK are now used.

Revision 12816  Directory Listing
Modified Mon Apr 19 21:53:59 2010 UTC (7 years, 5 months ago) by jcfr
BUG: Update ProstateNav/CMakeLists.txt - ProstateNav_REVISION is now obtained using either Subversion_WC_INFO or Git_WC_INFO

As of today, ProstateNav_REVISION will be generated properly only if it is checkout from SVN repo.

Revision 12813  Directory Listing
Modified Mon Apr 19 21:34:38 2010 UTC (7 years, 5 months ago) by jcfr
BUG: Update both the main and superbuild CMakeLists.txt to include Slicer3_BINARY_DIR/CMake in CMAKE_MODULE_PATH

That way, the downloaded file: ExternalProject.cmake and FindCTK.cmake will be
available ...

Revision 12812  Directory Listing
Modified Mon Apr 19 21:34:34 2010 UTC (7 years, 5 months ago) by jcfr
ENH: Added CTK dependency to Slicer3 superbuild.

Note that the project is added only if Slicer3_USE_QT is ON

Revision 12811  Directory Listing
Modified Mon Apr 19 21:34:31 2010 UTC (7 years, 5 months ago) by jcfr
ENH: Added convenient macro downloadFile to the main CMakeLists.txt used to
download the file FindCTK.cmake from CTK repository.

Revision 12810  Directory Listing
Modified Mon Apr 19 21:34:28 2010 UTC (7 years, 5 months ago) by jcfr
ENH: Added convenient macro 'downloadFile' to SuperBuild/CMakeLists.txt used
to download the version available on the CTK repository.

This later one provides the options: SVN_USERNAME, SVN_PASSWORD and GIT_REPOSITORY

Revision 12793  Directory Listing
Modified Sat Apr 17 18:22:58 2010 UTC (7 years, 5 months ago) by finetjul
COMP: fix export macro for qSlicerIOOptionsWidget on windows.

Revision 12792  Directory Listing
Modified Sat Apr 17 18:22:55 2010 UTC (7 years, 5 months ago) by finetjul
ENH: qSlicerDataDialog can be slow when handling a lot of files (>5000), disable sorting when processing a directory. If the user clicks cancel, erase the entries.

Revision 12781  Directory Listing
Modified Fri Apr 16 17:43:03 2010 UTC (7 years, 5 months ago) by finetjul
ENH: Merge trunk on Slicer4: rev12680 -> rev12778

Revision 12758  Directory Listing
Modified Wed Apr 14 21:32:02 2010 UTC (7 years, 5 months ago) by finetjul
ENH: Support qSlicerIOOptionsWidget in qSlicerDataDialog

Revision 12757  Directory Listing
Modified Wed Apr 14 21:31:59 2010 UTC (7 years, 5 months ago) by finetjul
ENH: add qSlicerVolumesIOOptionsWidget

Revision 12756  Directory Listing
Modified Wed Apr 14 21:31:55 2010 UTC (7 years, 5 months ago) by finetjul
ENH: Add qSlicerIOOptionsWidget

Revision 12755  Directory Listing
Modified Wed Apr 14 21:31:51 2010 UTC (7 years, 5 months ago) by finetjul
ENH: add qSlicerIOOptions

Revision 12753  Directory Listing
Modified Wed Apr 14 17:36:46 2010 UTC (7 years, 5 months ago) by jcfr
BUG: Added missing class QTCLI/qSlicerCLIModuleUIHelper

Revision 12747  Directory Listing
Modified Tue Apr 13 23:16:17 2010 UTC (7 years, 5 months ago) by finetjul
ENH: Add a checkable QHeaderView for the file column in qSlicerDataDialog.

Revision 12746  Directory Listing
Modified Tue Apr 13 23:16:14 2010 UTC (7 years, 5 months ago) by finetjul
STYLE: SlicerQT: move includes to be more consistent

Revision 12745  Directory Listing
Modified Tue Apr 13 23:16:10 2010 UTC (7 years, 5 months ago) by finetjul
ENH: Add qCTKCheckableHeaderView, a checkable QHeaderView

Revision 12739  Directory Listing
Modified Tue Apr 13 16:09:11 2010 UTC (7 years, 5 months ago) by jcfr
ENH: SlicerQT - Added Base/QTGUI/Testing/CMakeLists.txt file

Revision 12738  Directory Listing
Modified Tue Apr 13 16:09:07 2010 UTC (7 years, 5 months ago) by jcfr
ENH: SlicerQT - Added method extractModuleName to qSlicerCLILoadableModuleFactory. Also added corresponding test.

Revision 12737  Directory Listing
Modified Tue Apr 13 16:09:02 2010 UTC (7 years, 5 months ago) by jcfr
STYLE: Rename comment "// STL includes" to "// STD includes"

Revision 12736  Directory Listing
Modified Tue Apr 13 16:08:43 2010 UTC (7 years, 5 months ago) by jcfr
ENH: SlicerQT - Added function extractModuleName to qSlicerCLIExecutableModuleFactory. Also added corresponding test. Update also the comment of few CMakeLists.txt

Revision 12735  Directory Listing
Modified Tue Apr 13 16:08:37 2010 UTC (7 years, 5 months ago) by jcfr
ENH: SlicerQT - Update qSlicerLoadableModuleFactory to make use of function qSlicerUtils::extractModuleNameFromLibraryName

Revision 12734  Directory Listing
Modified Tue Apr 13 16:08:34 2010 UTC (7 years, 5 months ago) by jcfr
ENH: SlicerQT - Added function extractModuleNameFromLibraryName to qSlicerUtils. Also added test for isExecutableName, executableExtension() and extractModuleNameFromLibraryName()

Revision 12733  Directory Listing
Modified Tue Apr 13 16:08:30 2010 UTC (7 years, 5 months ago) by jcfr
COMP: SlicerQT - Remove extra library dependency from Base/QTCoreModules/Testing/CMakeLists.txt

Revision 12732  Directory Listing
Modified Tue Apr 13 16:08:27 2010 UTC (7 years, 5 months ago) by jcfr
ENH: SlicerQT - Add method extractModuleName to qSlicerCoreModuleFactory. Also added corresponding test.

Method just added and tested. Not yet used by the module manager.

Revision 12731  Directory Listing
Modified Tue Apr 13 16:08:22 2010 UTC (7 years, 5 months ago) by jcfr
ENH: SlicerQT - Added method 'extractModuleName' to qSlicerLoadableModuleFactory. Also added test qSlicerLoadableModuleFactoryTest1

Currently, modules are uniquely identified using their library name.
This later one is platform specific. For example, ThresholdLib.dll on windows
or libThresholdLib.so on linux.

This method allows to return the same identified in all cases.
In this example, 'threshold' will be returned.

The method extractModuleName is just added and tested, it's not yet used by
the module manager.

Revision 12730  Directory Listing
Modified Tue Apr 13 16:08:18 2010 UTC (7 years, 5 months ago) by jcfr
ENH: SlicerQT - Add test qSlicerModuleFactoryManager to Applications/SlicerQT

Revision 12729  Directory Listing
Modified Tue Apr 13 16:08:13 2010 UTC (7 years, 5 months ago) by jcfr
ENH: MRMLCLI/vtkMRMLCommandLineModuleNode is now using "vtkStandardNewMacro" macro

Revision 12728  Directory Listing
Modified Tue Apr 13 16:08:09 2010 UTC (7 years, 5 months ago) by jcfr
ENH: SlicerQT - In qMRMLNodeSelector, added function setCurrentNode(QString ) allowing to set the current node using its NodeId.

Revision 12727  Directory Listing
Modified Tue Apr 13 16:08:06 2010 UTC (7 years, 5 months ago) by jcfr
STYLE: In Libs/ModuleDescriptionParser/BinaryFileDescriptor.cxx, to improve readability, added separator between function.

Revision 12726  Directory Listing
Modified Tue Apr 13 16:08:02 2010 UTC (7 years, 5 months ago) by jcfr
ENH: SlicerQT - Added qCTKBinaryFileDescriptor classes - Available only under unix-like system - Allows to retrieve global symbol from executable.

Based on ModuleDescriptionParser/BinaryFileDescriptor.h

Revision 12725  Directory Listing
Modified Tue Apr 13 16:07:57 2010 UTC (7 years, 5 months ago) by jcfr
STYLE: In Libs/ModuleDescriptionParser/ModuleFactory, to improve readability, add separator between function.

Revision 12712  Directory Listing
Modified Mon Apr 12 04:19:57 2010 UTC (7 years, 5 months ago) by finetjul
COMP: Linking error on windows compilers

Revision 12698  Directory Listing
Modified Thu Apr 8 23:57:31 2010 UTC (7 years, 5 months ago) by finetjul
ENH: Add qSlicerDataDialog

Revision 12681  Directory Listing
Modified Wed Apr 7 21:05:37 2010 UTC (7 years, 5 months ago) by finetjul
ENH: Merge trunk on Slicer4: rev12486 -> rev12680

Revision 12676  Directory Listing
Modified Tue Apr 6 21:44:28 2010 UTC (7 years, 5 months ago) by finetjul
ENH: add debug information

Revision 12675  Directory Listing
Modified Tue Apr 6 21:44:24 2010 UTC (7 years, 5 months ago) by finetjul
ENH: Add support for Xcede catalogs

Revision 12674  Directory Listing
Modified Tue Apr 6 21:44:21 2010 UTC (7 years, 5 months ago) by finetjul
ENH: default color node id functions can be static.

Revision 12673  Directory Listing
Modified Tue Apr 6 21:44:17 2010 UTC (7 years, 5 months ago) by finetjul
ENH: When adding a scalar overlay, return the created storage node

Revision 12672  Directory Listing
Modified Tue Apr 6 21:44:13 2010 UTC (7 years, 5 months ago) by finetjul
ENH: Register the models and scalar overlay readers

Revision 12671  Directory Listing
Modified Tue Apr 6 21:44:10 2010 UTC (7 years, 5 months ago) by finetjul
ENH: SlicerQt: Add a Scalar Overlay reader

Revision 12670  Directory Listing
Modified Tue Apr 6 21:44:05 2010 UTC (7 years, 5 months ago) by finetjul
ENH: Move FreeSurfer specific code from vtkSlicerVolumesLogic to the FreeSurfer lib

Revision 12661  Directory Listing
Modified Mon Apr 5 23:55:06 2010 UTC (7 years, 5 months ago) by clisle
ENH: Beginning addition of slicer model import to IA-FEMesh module. 

Revision 12651  Directory Listing
Modified Mon Apr 5 18:53:28 2010 UTC (7 years, 5 months ago) by finetjul
ENH: After the scene was closed (all nodes removed), vtkSlicerSliceLogic tried to remove a node from the scene that has already been removed (and firing incorrect events (NodeRemovedRevent)).

Revision 12650  Directory Listing
Modified Mon Apr 5 18:53:25 2010 UTC (7 years, 5 months ago) by finetjul
BUG: RemoveNodeNoNotify shall not be called, use RemoveNode instead (we want to fire correct events at any time).

Revision 12649  Directory Listing
Modified Mon Apr 5 18:53:21 2010 UTC (7 years, 5 months ago) by finetjul
BUG: When a singleton node is "added", it is technically not added but copied to an already existing singleton node of the same class/singletonTag if it exists. In that case, we don't fire the NodeAboutToBeAdded/NodeAdded events.

Revision 12648  Directory Listing
Modified Mon Apr 5 18:53:18 2010 UTC (7 years, 5 months ago) by finetjul
ENH: When clearing the scene (all nodes but singletons), nodes must be removed normally and fire normal events.

Revision 12647  Directory Listing
Modified Mon Apr 5 18:53:14 2010 UTC (7 years, 5 months ago) by finetjul
ENH: SlicerQt: expose the priority property to qVTKObjects when creating connections. Applied to qMRMLSceneModel, the priority is used to update the qMRMLSceneModel internal data as soon as the NodeIsAdded/Removed event is fired. This is a way (and not the only/best one) to handle the situation where a node is added/removed when another node is added/removed: We update the internal state of qMRMLSceneModel as soon as possible.

Revision 12611  Directory Listing
Modified Thu Apr 1 23:03:55 2010 UTC (7 years, 5 months ago) by finetjul
ENH: SlicerQt: temporary fix to display dialogs always on top (to be above the module panel).

Revision 12595  Directory Listing
Modified Thu Apr 1 21:07:08 2010 UTC (7 years, 5 months ago) by finetjul
BUG: wrong inheritance given to vtkTypeRevisionMacro in vtkSlicerColorLogic

Revision 12594  Directory Listing
Modified Thu Apr 1 21:07:05 2010 UTC (7 years, 5 months ago) by finetjul
ENH: SlicerQt: add comments to qSlicerAbstractModule (no initialization code in the constructor but in qSlicerAbstractModule::setup() instead)

Revision 12593  Directory Listing
Modified Thu Apr 1 21:07:01 2010 UTC (7 years, 5 months ago) by finetjul
ENH: SlicerQT: set a coreIOManager to the coreApplication (in case there is no qSlicerApplication created but just a qSlicerCoreApplication).

Revision 12592  Directory Listing
Modified Thu Apr 1 21:06:58 2010 UTC (7 years, 5 months ago) by finetjul
BUG: Volume Rendering: if a volume has no image data, don't crash !

Revision 12591  Directory Listing
Modified Thu Apr 1 21:06:54 2010 UTC (7 years, 5 months ago) by finetjul
ENH: SlicerQt: Port Load/Import Scene dialogs into Qt (mrml scenes and xml scenes). Modules can implement readers/writers that can be registered into qSlicerCoreIOManager. Custom dialogs for custom types can be designed and registered into qSlicerIOManager.

Revision 12503  Directory Listing
Modified Sat Mar 27 00:36:35 2010 UTC (7 years, 6 months ago) by harveerar
BUG: Fixed bug with setting weights

Revision 12502  Directory Listing
Modified Sat Mar 27 00:36:14 2010 UTC (7 years, 6 months ago) by harveerar
BUG: Fixed bug with swapping labels

Revision 12501  Directory Listing
Modified Fri Mar 26 23:10:07 2010 UTC (7 years, 6 months ago) by harveerar
BUG: Fixed bug to compile

Revision 12500  Directory Listing
Modified Fri Mar 26 23:09:19 2010 UTC (7 years, 6 months ago) by harveerar
ENH: Added GrowCutSegment effect to display in editor effect

Revision 12499  Directory Listing
Modified Fri Mar 26 23:09:08 2010 UTC (7 years, 6 months ago) by harveerar
ENH: Added GrowCutSegment effect to display in editor effect

Revision 12487  Directory Listing
Modified Fri Mar 26 17:07:19 2010 UTC (7 years, 6 months ago) by harveerar
BUG: Added typename to fix unix related bug

Revision 12486  Directory Listing
Modified Fri Mar 26 16:41:58 2010 UTC (7 years, 6 months ago) by finetjul
ENH: Merge trunk on Slicer4.

Revision 12479  Directory Listing
Modified Thu Mar 25 23:36:50 2010 UTC (7 years, 6 months ago) by finetjul
ENH: SlicerQt: add a tester on the qMRMLNodeComboBox for time being.

Revision 12478  Directory Listing
Modified Thu Mar 25 23:36:46 2010 UTC (7 years, 6 months ago) by finetjul
ENH: MRML: While loading a volume, fire NodeAddedEvent and NodeRemovedEvent each time a node is added/removed.

Revision 12477  Directory Listing
Modified Thu Mar 25 23:36:42 2010 UTC (7 years, 6 months ago) by finetjul
ENH: While loading a scene, fire an event (NodeAddedEvent) for each added node, instead of 1 event per node type.

Revision 12474  Directory Listing
Modified Thu Mar 25 22:09:58 2010 UTC (7 years, 6 months ago) by finetjul
ENH: Don't refresh vtkSlicerNodeSelectorWidget when the scene is loading (and firing tones of NodeAdded events)

Revision 12464  Directory Listing
Modified Thu Mar 25 13:50:45 2010 UTC (7 years, 6 months ago) by harveerar
ENH:GrowCut Segmentation Effect

Revision 12463  Directory Listing
Modified Thu Mar 25 13:49:51 2010 UTC (7 years, 6 months ago) by harveerar
ENH:Added GrowCutSegmentation Effect

Revision 12462  Directory Listing
Modified Thu Mar 25 13:47:21 2010 UTC (7 years, 6 months ago) by harveerar
ENH:Image for Grow Cut Segmentation Effect

Revision 12461  Directory Listing
Modified Thu Mar 25 13:47:09 2010 UTC (7 years, 6 months ago) by harveerar
ENH:Image for Grow Cut Segmentation Effect

Revision 12460  Directory Listing
Modified Thu Mar 25 13:45:03 2010 UTC (7 years, 6 months ago) by harveerar
ENH: Implementation of the grow cut segmentation filter

Revision 12459  Directory Listing
Modified Thu Mar 25 13:43:26 2010 UTC (7 years, 6 months ago) by harveerar
ENH: Implementation of the logic image filter

Revision 12458  Directory Listing
Modified Thu Mar 25 13:41:54 2010 UTC (7 years, 6 months ago) by harveerar
ENH: wrapper for GrowCutSegmentationImageFilter

Revision 12457  Directory Listing
Modified Thu Mar 25 13:38:48 2010 UTC (7 years, 6 months ago) by harveerar
ENH: Logic filter for performing logical operations between images

Revision 12456  Directory Listing
Modified Thu Mar 25 13:38:17 2010 UTC (7 years, 6 months ago) by harveerar
ENH:GrowCut Segmentation Filter

Revision 12455  Directory Listing
Modified Thu Mar 25 13:17:58 2010 UTC (7 years, 6 months ago) by harveerar
STYLE:Fixed comments

Revision 12453  Directory Listing
Modified Wed Mar 24 21:46:51 2010 UTC (7 years, 6 months ago) by harveerar
ENH: Added GrowCutSegmentation classes and LogicImageFilter classes for supporting the GrowCutSegment editor effect

Revision 12451  Directory Listing
Modified Wed Mar 24 21:39:27 2010 UTC (7 years, 6 months ago) by harveerar
ENH: Interactive Segmentation using Grow Cut added to Editor

Revision 12438  Directory Listing
Modified Tue Mar 23 23:16:07 2010 UTC (7 years, 6 months ago) by pieper
ENH: create a new branch for Qt-related development as a basis for Slicer4 (http://www.slicer.org/slicerWiki/index.php/Slicer4) while the trunk is frozen in preparation for release of slicer 3.6 http://www.slicer.org/slicerWiki/index.php/Slicer3:3.6Release

Revision 12435  Directory Listing
Modified Tue Mar 23 17:44:29 2010 UTC (7 years, 6 months ago) by hayes
ENH: Changed version number to 3.4.3

Revision 12351  Directory Listing
Modified Mon Mar 15 20:29:29 2010 UTC (7 years, 6 months ago) by fedorov
BUG: fix Volumes logic dependency 

Revision 12342  Directory Listing
Modified Sun Mar 14 13:58:52 2010 UTC (7 years, 6 months ago) by pieper
BUG: revert to CMake 2.6 to avoid windows installation issues

Revision 12332  Directory Listing
Modified Thu Mar 11 14:25:17 2010 UTC (7 years, 6 months ago) by clisle
BUG: fixing problems in Meshing lists to manage custom display nodes. Removed some crash conditions. 

Revision 12106  Directory Listing
Modified Thu Feb 11 16:20:31 2010 UTC (7 years, 7 months ago) by fedorov
ENH: improving the intensity metric

Revision 11972  Directory Listing
Modified Thu Feb 4 18:49:41 2010 UTC (7 years, 7 months ago) by naucoin
STYLE: point to 3.4 tutorials

Revision 11969  Directory Listing
Modified Thu Feb 4 16:42:43 2010 UTC (7 years, 7 months ago) by fedorov
BUG: missing functions in logic

Revision 11968  Directory Listing
Modified Thu Feb 4 16:37:10 2010 UTC (7 years, 7 months ago) by fedorov
ENH: sync

Revision 11966  Directory Listing
Modified Thu Feb 4 16:24:34 2010 UTC (7 years, 7 months ago) by fedorov
ENH: moving development work out from the trunk

Revision 11859  Directory Listing
Modified Fri Jan 29 04:20:53 2010 UTC (7 years, 7 months ago) by clisle
BUG: runs now with segmentation writing over source volume!  Wow!

Revision 11727  Directory Listing
Modified Fri Jan 22 09:43:17 2010 UTC (7 years, 8 months ago) by clisle
BUG: debugging add 2D label volume to scene. MRML initialization problem

Revision 11723  Directory Listing
Modified Thu Jan 21 22:03:40 2010 UTC (7 years, 8 months ago) by naucoin
BUG: make sure strip off a trailing slash if in the root dir, deal with relative dirs going to the RelativePath call

Revision 11722  Directory Listing
Modified Thu Jan 21 22:01:33 2010 UTC (7 years, 8 months ago) by naucoin
BUG: don't add a trailing slash to the directory name, warning to debug macro, fixed typo in var name

Revision 11713  Directory Listing
Modified Wed Jan 20 23:30:06 2010 UTC (7 years, 8 months ago) by naucoin
BUG: fixing save intermediate EM Segmentation Template Builder scene, need to pass absolute paths to SetFileName, and take off the added trailing slash on the scene root directory name

Revision 11702  Directory Listing
Modified Tue Jan 19 19:30:07 2010 UTC (7 years, 8 months ago) by naucoin
BUG: porting bug fix for bug 634 from revision 10630 (removing temp dir after writing)

Revision 11597  Directory Listing
Modified Tue Jan 12 14:07:42 2010 UTC (7 years, 8 months ago) by ibanez
COMP: Invalid use of char * replaced now with std::string. Pointed out by gcc 4.4.

Revision 11596  Directory Listing
Modified Tue Jan 12 14:07:04 2010 UTC (7 years, 8 months ago) by ibanez
COMP: inconsisten use of printf() replaced with std::cout. Pointed out by gcc 4.4.

Revision 11595  Directory Listing
Modified Tue Jan 12 14:06:26 2010 UTC (7 years, 8 months ago) by ibanez
COMP: const-correctness violations pointed out by Gcc 4.4

Revision 11593  Directory Listing
Modified Tue Jan 12 03:25:20 2010 UTC (7 years, 8 months ago) by ibanez
COMP: Fixing problem with lack of declaration of sprintf. The include for stdio.h was missing. Pointed out by gcc 4.4.

Revision 11546  Directory Listing
Modified Thu Jan 7 06:11:10 2010 UTC (7 years, 8 months ago) by clisle
BUG: found mesh list problem.  All Meshing lists (surface,bblock, mesh) besides image, use MRML and work in scenes.  No coloring for quality yet.  Many crash cases removed. 

Revision 11526  Directory Listing
Modified Tue Jan 5 15:54:01 2010 UTC (7 years, 8 months ago) by hayes
ENH: Changed version number

Revision 11525  Directory Listing
Modified Tue Jan 5 08:49:58 2010 UTC (7 years, 8 months ago) by clisle
BUG: fixed problems in MimxSurface and BBlock lists.  All items stored in MRML tree and respond to ViewProperties.

Revision 11514  Directory Listing
Modified Tue Jan 5 01:59:47 2010 UTC (7 years, 8 months ago) by clisle
ENH: meshing module - adding better MRML integration

Revision 11503  Directory Listing
Modified Mon Jan 4 03:14:31 2010 UTC (7 years, 8 months ago) by clisle
ENH: moved surfaces to MRML; working on BBlock now; bblock is created wrong currently 

Revision 11499  Directory Listing
Modified Sun Jan 3 17:49:16 2010 UTC (7 years, 8 months ago) by clisle
ENH: meshing module - adding better MRML integration

Revision 11498  Directory Listing
Modified Sun Jan 3 07:25:55 2010 UTC (7 years, 8 months ago) by clisle
ENH: Continuing modifications of meshing to use MRMLDisplayNodes instead of MimxActors for rendering.

Revision 11496  Directory Listing
Modified Sat Jan 2 19:25:54 2010 UTC (7 years, 8 months ago) by fedorov
BUG: corrected message

Revision 11472  Directory Listing
Modified Thu Dec 31 18:58:55 2009 UTC (7 years, 8 months ago) by fedorov
BUG: default ROI bounds were not initialized

Revision 11470  Directory Listing
Modified Thu Dec 31 15:45:58 2009 UTC (7 years, 8 months ago) by fedorov
BUG: fixes for mantis bugs

Revision 11463  Directory Listing
Modified Thu Dec 31 00:28:20 2009 UTC (7 years, 8 months ago) by clisle
ENH: meshing module - adding better MRML integration

Revision 11424  Directory Listing
Modified Tue Dec 29 15:48:21 2009 UTC (7 years, 8 months ago) by clisle
ENH: Continuing modifyications of meshing to use MRMLDisplayNodes instead of MimxActors for rendering.

Revision 11323  Directory Listing
Modified Wed Dec 16 05:01:23 2009 UTC (7 years, 9 months ago) by pieper
COMP: add missing file

Revision 11241  Directory Listing
Modified Thu Dec 10 01:20:04 2009 UTC (7 years, 9 months ago) by fedorov
BUG: Cast module is required to prepare inputs for EM Segmenter.

Revision 11016  Directory Listing
Modified Mon Nov 23 15:27:26 2009 UTC (7 years, 10 months ago) by clisle
ENH: adding check for models on meshing module enter

Revision 11015  Directory Listing
Modified Mon Nov 23 13:28:40 2009 UTC (7 years, 10 months ago) by clisle
BUG: move slicer SVN head to branch

Revision 10938  Directory Listing
Modified Wed Nov 11 13:35:49 2009 UTC (7 years, 10 months ago) by clisle
ENH: new meshing integration for 2010

Revision 10887  Directory Listing
Modified Fri Nov 6 15:33:23 2009 UTC (7 years, 10 months ago) by wjp@bwh.harvard.edu
ENH: added bw qualifier to SUV labels

Revision 10886  Directory Listing
Modified Fri Nov 6 15:13:41 2009 UTC (7 years, 10 months ago) by wjp@bwh.harvard.edu
BUG: added decay correction to the dose calcluation

Revision 10874  Directory Listing
Modified Wed Nov 4 17:58:01 2009 UTC (7 years, 10 months ago) by wjp@bwh.harvard.edu
BUG: deleting labels

Revision 10873  Directory Listing
Modified Wed Nov 4 17:52:57 2009 UTC (7 years, 10 months ago) by wjp@bwh.harvard.edu
ENH: added changes suggested by Ron in 11/3 meeting.

Revision 10860  Directory Listing
Modified Wed Nov 4 13:21:11 2009 UTC (7 years, 10 months ago) by wjp@bwh.harvard.edu
ENH: i think we have to change slicer_variables.tcl to use the branch tag? trying...

Revision 10846  Directory Listing
Modified Mon Nov 2 19:16:17 2009 UTC (7 years, 10 months ago) by wjp@bwh.harvard.edu
BUG: handling the case in which PET volume is non-DICOM

Revision 10842  Directory Listing
Modified Mon Nov 2 14:57:47 2009 UTC (7 years, 10 months ago) by wjp@bwh.harvard.edu
ENH: cleaned up error messages and added help text

Revision 10841  Directory Listing
Modified Mon Nov 2 14:57:07 2009 UTC (7 years, 10 months ago) by wjp@bwh.harvard.edu
BUG: null pointer checking if pet volume is non-DICOM

Revision 10837  Directory Listing
Modified Sun Nov 1 22:43:47 2009 UTC (7 years, 10 months ago) by wjp@bwh.harvard.edu
ENH: made GUI, MRML, Logic changes to address usability feedback from Ron and Jeff

Revision 10836  Directory Listing
Modified Sun Nov 1 22:42:06 2009 UTC (7 years, 10 months ago) by wjp@bwh.harvard.edu
ENH: added PETProceduralColorNode for MIP

Revision 10739  Directory Listing
Modified Fri Oct 23 20:04:06 2009 UTC (7 years, 11 months ago) by wjp@bwh.harvard.edu
ENH: branch for safe development of workshop modules

Revision 10637  Directory Listing
Modified Wed Oct 14 02:40:04 2009 UTC (7 years, 11 months ago) by domibel
ENH: keep version number synchronized with ./Scripts/getbuildtest.tcl

Revision 10598  Directory Listing
Modified Thu Oct 8 17:27:05 2009 UTC (7 years, 11 months ago) by hayes
ENH: Changed version number to 3.4.1

Revision 10565  Directory Listing
Modified Fri Oct 2 12:15:39 2009 UTC (7 years, 11 months ago) by pieper
COMP: allow extensions to build against the binary (merge 10533 from trunk

Revision 10560  Directory Listing
Modified Thu Oct 1 19:57:17 2009 UTC (7 years, 11 months ago) by pieper
BUG: merge fixes for http transactions with extension server from trunk

Revision 10555  Directory Listing
Modified Thu Oct 1 17:25:00 2009 UTC (7 years, 11 months ago) by pieper
BUG: fix unitialized variables

Revision 10550  Directory Listing
Modified Wed Sep 30 21:12:50 2009 UTC (7 years, 11 months ago) by fedorov
BUG: previous change caused increment of an invalid key iterator, causing
segfault

Revision 10546  Directory Listing
Modified Tue Sep 29 20:41:29 2009 UTC (7 years, 11 months ago) by pieper
ENH: switch to std::map instead of vtksys::hash_map for sanity

Revision 10545  Directory Listing
Modified Tue Sep 29 20:05:20 2009 UTC (7 years, 11 months ago) by pieper
COMP: extra debugging code

Revision 10538  Directory Listing
Modified Tue Sep 29 13:54:55 2009 UTC (7 years, 11 months ago) by pieper
COMP: use the event broker optimization tag in this branch

Revision 10513  Directory Listing
Modified Tue Sep 22 14:06:49 2009 UTC (8 years ago) by pieper
ENH: extra debugging info to track down crash on exit issue

Revision 10512  Directory Listing
Modified Tue Sep 22 13:58:50 2009 UTC (8 years ago) by pieper
ENH: work on speedup for mrml scene closing by keeping indexes of observations by subject and observer

Revision 10509  Directory Listing
Modified Mon Sep 21 19:37:37 2009 UTC (8 years ago) by fedorov
BUG: set build type correctly if --release flag is specified

Revision 10503  Directory Listing
Modified Fri Sep 18 20:41:32 2009 UTC (8 years ago) by clisle
BUG: fixing mesh quality display.  seems to work on Linux-64

Revision 10501  Directory Listing
Modified Fri Sep 18 18:02:02 2009 UTC (8 years ago) by clisle
ENH: fix missing license file for MIMX contributed code. 

Revision 10482  Directory Listing
Modified Wed Sep 16 21:08:11 2009 UTC (8 years ago) by fedorov
BUG: missing space

Revision 10472  Directory Listing
Modified Mon Sep 14 12:07:20 2009 UTC (8 years ago) by pieper
COMP: fix to the teem install directory name

Revision 10438  Directory Listing
Modified Wed Sep 9 23:02:34 2009 UTC (8 years ago) by fedorov
BUG: incorrect pixel typing could lead to changes in the image
intensity for some modules used with some data types (eg, char vs uchar)

Revision 10391  Directory Listing
Modified Fri Aug 28 22:27:40 2009 UTC (8 years, 1 month ago) by pieper
BUG: migrate bug fix from trunk - fix calculation to avoid some event loops

Revision 10325  Directory Listing
Modified Fri Aug 21 15:38:24 2009 UTC (8 years, 1 month ago) by fedorov
ENH: remove registration test 2

Revision 10317  Directory Listing
Modified Thu Aug 20 16:29:55 2009 UTC (8 years, 1 month ago) by pieper
BUG: migrate from trunk (fix resize of list box with dialog)

Revision 10315  Directory Listing
Modified Thu Aug 20 13:11:59 2009 UTC (8 years, 1 month ago) by fedorov
ENH: Steve's idea implemented: load tutorial data with one button click!

Revision 10265  Directory Listing
Modified Fri Aug 14 21:10:13 2009 UTC (8 years, 1 month ago) by pieper
ENH: migrate updated extensions build and install functionality from trunk to release branch in prepration for 3.4.1 patch release

Revision 10263  Directory Listing
Modified Fri Aug 14 21:06:22 2009 UTC (8 years, 1 month ago) by fedorov
BUG: hide volume rendering when exiting the module

Revision 10260  Directory Listing
Modified Fri Aug 14 19:47:36 2009 UTC (8 years, 1 month ago) by pieper
COMP: extensions that should be built against the 3.4 release branch

Revision 10259  Directory Listing
Modified Fri Aug 14 19:45:32 2009 UTC (8 years, 1 month ago) by pieper
COMP: remove non-example extensions so they can be moved to the external svn

Revision 10220  Directory Listing
Modified Wed Aug 12 14:36:05 2009 UTC (8 years, 1 month ago) by wjp@bwh.harvard.edu
ENH: adding some error checking

Revision 10189  Directory Listing
Modified Fri Aug 7 20:18:40 2009 UTC (8 years, 1 month ago) by wjp@bwh.harvard.edu
BUG: taking care of assigning compositing state when slice viewers are linked

Revision 10185  Directory Listing
Modified Fri Aug 7 18:46:46 2009 UTC (8 years, 1 month ago) by wjp@bwh.harvard.edu
BUG: changing return value of write callback to be 0 instead of -1 to match return type unsigned in

Revision 10133  Directory Listing
Modified Fri Jul 31 19:13:16 2009 UTC (8 years, 1 month ago) by wjp@bwh.harvard.edu
BUG: fixed some bugs in the code and tested. Clears out space in TempDir and CacheDir unless it finds a read-only file (currently stops deleting files in the dir when it encounters this permission setting as noted in VTK's SystemTools.cxx RemoveFile method) and starts up with the NoModules setting, if the write file test fails.

Revision 10130  Directory Listing
Modified Fri Jul 31 16:25:42 2009 UTC (8 years, 1 month ago) by wjp@bwh.harvard.edu
BUG: checking for file system full before testing default module cache paths. Still testing this.

Revision 10112  Directory Listing
Modified Thu Jul 30 00:32:36 2009 UTC (8 years, 2 months ago) by wjp@bwh.harvard.edu
BUG: initializing compositing state and updating GUI to match state in each SliceCompositeNode, including respecting linked state of slice viewers.

Revision 10091  Directory Listing
Modified Wed Jul 29 13:57:39 2009 UTC (8 years, 2 months ago) by sylvain
BUG: Mean and Covariance are not variables of the MRML tree

Revision 10085  Directory Listing
Modified Wed Jul 29 00:39:13 2009 UTC (8 years, 2 months ago) by sylvain
BUG: fix the WriteXML bug. Missing space at the beginning of line. vtkMRMLNode does not include a space at the end of the line. It's the responsibility of WriteXML functions in every module.

Revision 10078  Directory Listing
Modified Tue Jul 28 20:16:56 2009 UTC (8 years, 2 months ago) by pieper
ENH: new directory for storing extension files (.s3ext files) for slicer 3.4

Revision 10077  Directory Listing
Modified Tue Jul 28 20:16:22 2009 UTC (8 years, 2 months ago) by pieper
ENH: new directory for storing extension files (.s3ext files) that get added into a branched release of slicer3

Revision 10072  Directory Listing
Modified Tue Jul 28 18:33:24 2009 UTC (8 years, 2 months ago) by tgl
BUG 611 use the temporary directory to install extensions if no other directory has been specified

Revision 10067  Directory Listing
Modified Tue Jul 28 17:28:45 2009 UTC (8 years, 2 months ago) by naucoin
BUG: 613 spaces need to go before keys

Revision 10064  Directory Listing
Modified Tue Jul 28 16:36:24 2009 UTC (8 years, 2 months ago) by naucoin
BUG: 604 patch ported to branch

Revision 10038  Directory Listing
Modified Mon Jul 27 15:47:50 2009 UTC (8 years, 2 months ago) by naucoin
STYLE: fixed documentation link

Revision 10019  Directory Listing
Modified Fri Jul 24 17:39:41 2009 UTC (8 years, 2 months ago) by jvs
ENH: connectivity bugfix

Revision 10015  Directory Listing
Modified Fri Jul 24 15:09:09 2009 UTC (8 years, 2 months ago) by alexy
BUG-FIXED: 0000594
Check the interpolated point using IsInsideBuffer

Revision 9999  Directory Listing
Modified Wed Jul 22 13:12:49 2009 UTC (8 years, 2 months ago) by pieper
COMP: turn off Utah b-spline from 3.4 release branch until it has been tested in the trunk

Revision 9989  Directory Listing
Modified Tue Jul 21 16:02:28 2009 UTC (8 years, 2 months ago) by alexy
BUG-FIXED: 603
Disable rendering during scene loading
fixed crash when rendering while loading scene.

Revision 9975  Directory Listing
Modified Mon Jul 20 20:06:36 2009 UTC (8 years, 2 months ago) by pieper
BUG: fix for but 318 where clicking in the trough of the scale widget in the slice controller would sometimes skip slices (this fix is in trunk too, now migrating to 3.4 branch).

Revision 9973  Directory Listing
Modified Mon Jul 20 19:22:11 2009 UTC (8 years, 2 months ago) by pieper
STYLE: avoid unitialized variable

Revision 9972  Directory Listing
Modified Mon Jul 20 19:21:50 2009 UTC (8 years, 2 months ago) by pieper
STYLE: avoid unitialized variable

Revision 9968  Directory Listing
Modified Mon Jul 20 17:04:21 2009 UTC (8 years, 2 months ago) by pieper
BUG: merge missing method declarations from trunk to branch

Revision 9966  Directory Listing
Modified Mon Jul 20 04:36:12 2009 UTC (8 years, 2 months ago) by tokuda
BUG: fixing bug (OpenIGTLink IF always tries to center the image)

Revision 9962  Directory Listing
Modified Fri Jul 17 20:06:15 2009 UTC (8 years, 2 months ago) by pieper
BUG: merge fixes from the trunk for parameter map and slice node leak

Revision 9960  Directory Listing
Modified Fri Jul 17 16:32:35 2009 UTC (8 years, 2 months ago) by pieper
BUG: fix linked slice view (part of bug 318) and add annotation to volume names

Revision 9953  Directory Listing
Modified Thu Jul 16 08:02:21 2009 UTC (8 years, 2 months ago) by hong
BUG: Initialization in UpdateLocatorTransform()by smkim

Revision 9951  Directory Listing
Modified Wed Jul 15 20:40:13 2009 UTC (8 years, 2 months ago) by wjp@bwh.harvard.edu
BUG: moving error log button out from under the mac's window resize widget at corner

Revision 9950  Directory Listing
Modified Wed Jul 15 20:16:43 2009 UTC (8 years, 2 months ago) by fedorov
BUG: merge from trunk -- the correct way of setting MRML observers propagated to the affected modules (followup for r9941)

Revision 9947  Directory Listing
Modified Wed Jul 15 17:05:00 2009 UTC (8 years, 2 months ago) by naucoin
BUG: taking out unnecessary RemoveObservers call left over from previous widget type

Revision 9942  Directory Listing
Modified Wed Jul 15 15:36:28 2009 UTC (8 years, 2 months ago) by pieper
BUG: merge from trunk: add new method to lookup the standard VTK event numbers for strings (like ModifiedEvent).  This was required because the vtkCommand list of events was edited such that the old numbers were no longer valid

Revision 9937  Directory Listing
Modified Wed Jul 15 14:47:57 2009 UTC (8 years, 2 months ago) by pieper
BUG: migrated from trunk: follow on fix to bugs 591 and 611.  When the AddArchetypeVolume tries to read a vtkMRMLVectorVolume we need to let it go through (but 591) but I believe the current code will also work for but 611, where a tensor volume should not be allowd to read into a scalar volume node

Revision 9892  Directory Listing
Modified Thu Jul 9 17:49:33 2009 UTC (8 years, 2 months ago) by pieper
COMP: fix compile warning

Revision 9889  Directory Listing
Modified Wed Jul 8 22:11:19 2009 UTC (8 years, 2 months ago) by naucoin
BUG: support writing and reading vtk formats for freesurfer models

Revision 9856  Directory Listing
Modified Mon Jul 6 21:16:24 2009 UTC (8 years, 2 months ago) by sgerber
BUG: fixed phyiscal gradeint computation issue. Added correct scaling. Changed parameter settings.

Revision 9852  Directory Listing
Modified Mon Jul 6 14:29:00 2009 UTC (8 years, 2 months ago) by pieper
COMP: fixed template types and ambiguous floating point calls

Revision 9836  Directory Listing
Modified Wed Jul 1 23:50:11 2009 UTC (8 years, 2 months ago) by sgerber
ENH: Updated Utah BSpline Module

Revision 9790  Directory Listing
Modified Thu Jun 25 03:34:37 2009 UTC (8 years, 3 months ago) by barre
ENH: bring more fixes from AHM

Revision 9785  Directory Listing
Modified Wed Jun 24 18:05:42 2009 UTC (8 years, 3 months ago) by barre
ENH: bring debut leaks from trunk

Revision 9784  Directory Listing
Modified Wed Jun 24 18:04:50 2009 UTC (8 years, 3 months ago) by barre
ENH: fix some leaks

Revision 9783  Directory Listing
Modified Wed Jun 24 18:04:38 2009 UTC (8 years, 3 months ago) by barre
ENH: bring debut leaks from trunk

Revision 9777  Directory Listing
Modified Wed Jun 24 14:20:10 2009 UTC (8 years, 3 months ago) by barre
ENH: fix update

Revision 9775  Directory Listing
Modified Wed Jun 24 13:52:52 2009 UTC (8 years, 3 months ago) by alexy
ENH: fixed CT reslice

Revision 9750  Directory Listing
Modified Mon Jun 22 04:06:01 2009 UTC (8 years, 3 months ago) by barre
ENH: minor fixes

Revision 9749  Directory Listing
Modified Mon Jun 22 03:41:46 2009 UTC (8 years, 3 months ago) by barre
ENH: merge cameraviewhell to 3.4 in cameraviewhell3.4

Revision 9740  Directory Listing
Modified Fri Jun 19 22:00:14 2009 UTC (8 years, 3 months ago) by clisle
ENH: Added thresholding to Meshing Module mesh rendering.  User can now specify percentage of elements to display interactively.

Revision 9738  Directory Listing
Modified Fri Jun 19 19:53:34 2009 UTC (8 years, 3 months ago) by pieper
ENH: new extension

Revision 9726  Directory Listing
Modified Thu Jun 18 16:33:13 2009 UTC (8 years, 3 months ago) by barre
ENH: ugh. no SDK path?

Revision 9725  Directory Listing
Modified Thu Jun 18 16:06:50 2009 UTC (8 years, 3 months ago) by barre
ENH: try harder. I give up. I'm not even asking for nmake, or Unix Makefiles on Win32, but just build on a Vista 64 bits running a 64 bits compiler. Fail.

Revision 9723  Directory Listing
Modified Thu Jun 18 15:42:34 2009 UTC (8 years, 3 months ago) by barre
ENH: try harder

Revision 9714  Directory Listing
Modified Wed Jun 17 01:46:08 2009 UTC (8 years, 3 months ago) by clisle
BUG: Added clipping of outline by using 2nd RenderQuality class inside FEMeshOutlineDisplayNode.  Use of this full class increases flexibility of display possibilities. 

Revision 9703  Directory Listing
Modified Mon Jun 15 21:19:43 2009 UTC (8 years, 3 months ago) by pieper
BUG: add missing copyright file

Revision 9697  Directory Listing
Modified Mon Jun 15 20:18:31 2009 UTC (8 years, 3 months ago) by pieper
BUG: fix license text (with Stephen Aylward's permission

Revision 9687  Directory Listing
Modified Fri Jun 12 17:57:58 2009 UTC (8 years, 3 months ago) by pieper
BUG: clean up module selection logic and avoid selection when running tests

Revision 9686  Directory Listing
Modified Fri Jun 12 16:41:36 2009 UTC (8 years, 3 months ago) by alexy
ENH: added CT reslice

Revision 9685  Directory Listing
Modified Fri Jun 12 14:25:21 2009 UTC (8 years, 3 months ago) by alexy
ENH: combined calib, reg, and sensor matrix

Revision 9682  Directory Listing
Modified Thu Jun 11 13:44:10 2009 UTC (8 years, 3 months ago) by pieper
BUG: make input file match re-generated output file

Revision 9679  Directory Listing
Modified Wed Jun 10 21:49:28 2009 UTC (8 years, 3 months ago) by pieper
BUG: clarify license

Revision 9678  Directory Listing
Modified Wed Jun 10 21:43:25 2009 UTC (8 years, 3 months ago) by pieper
BUG: fix license issue

Revision 9675  Directory Listing
Modified Wed Jun 10 21:28:27 2009 UTC (8 years, 3 months ago) by pieper
BUG: add license statement

Revision 9674  Directory Listing
Modified Wed Jun 10 21:24:58 2009 UTC (8 years, 3 months ago) by pieper
BUG: remove incorrect license headers

Revision 9672  Directory Listing
Modified Wed Jun 10 01:15:46 2009 UTC (8 years, 3 months ago) by clisle
BUG:meshing module -  adding mechanism for quality rendering of mesh;  still in progress

Revision 9656  Directory Listing
Modified Sun Jun 7 02:36:53 2009 UTC (8 years, 3 months ago) by tgl
ENH results of svn merge -r9654:9655 http://svn.slicer.org/Slicer3/trunk/Base/GUI .

Revision 9654  Directory Listing
Modified Sun Jun 7 02:01:56 2009 UTC (8 years, 3 months ago) by tgl
BUG searching for cvs key from wrong location, use the zip extension

Revision 9651  Directory Listing
Modified Fri Jun 5 17:57:25 2009 UTC (8 years, 3 months ago) by alexy
ENH: added data converter

Revision 9646  Directory Listing
Modified Wed Jun 3 19:41:14 2009 UTC (8 years, 3 months ago) by wjp@bwh.harvard.edu
BUG: getting rid of CDash graffitti and cleaning up widgets in destructor methods

Revision 9645  Directory Listing
Modified Wed Jun 3 19:33:50 2009 UTC (8 years, 3 months ago) by wjp@bwh.harvard.edu
ENH: added comment to code

Revision 9644  Directory Listing
Modified Wed Jun 3 19:32:24 2009 UTC (8 years, 3 months ago) by wjp@bwh.harvard.edu
BUG: making fetchmi update metadata on enter in case data has been added while module wasa not raised.

Revision 9643  Directory Listing
Modified Wed Jun 3 19:31:25 2009 UTC (8 years, 3 months ago) by wjp@bwh.harvard.edu
BUG: adding more user feedback when entering/exiting modules

Revision 9637  Directory Listing
Modified Tue Jun 2 19:47:33 2009 UTC (8 years, 3 months ago) by alexy
ENH: endonav work

Revision 9636  Directory Listing
Modified Tue Jun 2 16:21:33 2009 UTC (8 years, 3 months ago) by clisle
ENH: Added capability for ViewProperties to control the MRML display node for the mesh.  Debugged mesh rendering.  This is stable now without the capability to use the clipping plane.

Revision 9634  Directory Listing
Modified Mon Jun 1 01:08:44 2009 UTC (8 years, 3 months ago) by alexy
ENH: made external 2D viewer

Revision 9632  Directory Listing
Modified Sat May 30 20:24:53 2009 UTC (8 years, 3 months ago) by clisle
ENH: IA-FEMesh - displaying data using only MRMLDisplayNodes now.   Integration still in progress.

Revision 9629  Directory Listing
Modified Fri May 29 18:11:57 2009 UTC (8 years, 4 months ago) by wjp@bwh.harvard.edu
ENH: changes required for the Editor module bug fix: node selector widget now invokes a NodeRenamedEvent when that option is selected from the context helper menu

Revision 9628  Directory Listing
Modified Fri May 29 18:10:57 2009 UTC (8 years, 4 months ago) by wjp@bwh.harvard.edu
BUG: addressing bug #585; changes made to address a request by Ron in the Editor GUI panel in the trunk make this bug go away in the release branch, so I'll check it in here too. Uses different widgets in the Volumes frame

Revision 9627  Directory Listing
Modified Fri May 29 16:53:04 2009 UTC (8 years, 4 months ago) by alexy
ENH: fixed project names

Revision 9626  Directory Listing
Modified Fri May 29 16:52:30 2009 UTC (8 years, 4 months ago) by alexy
ENH: sorted file names

Revision 9621  Directory Listing
Modified Fri May 29 03:17:37 2009 UTC (8 years, 4 months ago) by jvs
ENH: DTI conversion

Revision 9619  Directory Listing
Modified Thu May 28 14:58:37 2009 UTC (8 years, 4 months ago) by clisle
BUG: fixed bug where the orientation axis didn't move after leaving and re-entering the IA-FEMesh module.  A callback had been removed and not re-installed. 

Revision 9617  Directory Listing
Modified Thu May 28 13:01:45 2009 UTC (8 years, 4 months ago) by alexy
ENH: added EndoNav

Revision 9616  Directory Listing
Modified Thu May 28 12:06:10 2009 UTC (8 years, 4 months ago) by alexy
ENH: send 3 transforms

Revision 9615  Directory Listing
Modified Thu May 28 10:01:51 2009 UTC (8 years, 4 months ago) by clisle
BUG: deleting eclipse project file that was accidentally committed

Revision 9614  Directory Listing
Modified Thu May 28 10:00:40 2009 UTC (8 years, 4 months ago) by clisle
BUG: deleting eclipse project file that was accidentally committed

Revision 9613  Directory Listing
Modified Thu May 28 09:59:23 2009 UTC (8 years, 4 months ago) by clisle
BUG: deleting eclipse project file that was accidentally committed

Revision 9611  Directory Listing
Modified Wed May 27 20:36:25 2009 UTC (8 years, 4 months ago) by clisle
ENH: improved meshing  module rendering

Revision 9610  Directory Listing
Modified Wed May 27 20:01:02 2009 UTC (8 years, 4 months ago) by clisle
ENH: Adding MIMX license for meshing module

Revision 9607  Directory Listing
Modified Wed May 27 19:06:16 2009 UTC (8 years, 4 months ago) by wjp@bwh.harvard.edu
BUG: made node name editable in save data widget as per Ron's request

Revision 9606  Directory Listing
Modified Wed May 27 03:59:50 2009 UTC (8 years, 4 months ago) by clisle
BUG: had class hierarchy wrong for UGrid, fixed to be subclass of model 

Revision 9605  Directory Listing
Modified Tue May 26 15:55:23 2009 UTC (8 years, 4 months ago) by clisle
BUG: forgot to add MRMLMeshOutlineDisplayNode

Revision 9604  Directory Listing
Modified Tue May 26 15:46:09 2009 UTC (8 years, 4 months ago) by clisle
ENH: progress converting over to display nodes - focus here on Meshing display nodes;  added outline display node for mesh; updated ViewProperties dialog to work;  still don't see meshes/bblocks as models. 

Revision 9602  Directory Listing
Modified Tue May 26 13:43:06 2009 UTC (8 years, 4 months ago) by alexy
ENH: read legacy (slicer2-lmi) file format

Revision 9601  Directory Listing
Modified Mon May 25 08:25:45 2009 UTC (8 years, 4 months ago) by lantiga
ENH: enhanced documentation and acknowledgements of Python scripts

Revision 9600  Directory Listing
Modified Sat May 23 03:50:46 2009 UTC (8 years, 4 months ago) by clisle
ENH: Added MIMXCopywright.txt; refactoring mesh rendering to work through display node.

Revision 9599  Directory Listing
Modified Sat May 23 01:26:49 2009 UTC (8 years, 4 months ago) by jvs
ENH: connectivity feature + code cleaning

Revision 9593  Directory Listing
Modified Thu May 21 21:08:28 2009 UTC (8 years, 4 months ago) by barre
COMP: confusing assignment

Revision 9592  Directory Listing
Modified Thu May 21 21:08:12 2009 UTC (8 years, 4 months ago) by barre
ENH: debug leak...

Revision 9583  Directory Listing
Modified Thu May 21 17:37:27 2009 UTC (8 years, 4 months ago) by hayes
ENH: Removed RC1 from GUI

Revision 9582  Directory Listing
Modified Thu May 21 17:17:00 2009 UTC (8 years, 4 months ago) by hayes
BUG: fixed version-patch

Revision 9578  Directory Listing
Modified Thu May 21 13:34:36 2009 UTC (8 years, 4 months ago) by jvs
ENH: minor bugfix

Revision 9573  Directory Listing
Modified Thu May 21 05:27:58 2009 UTC (8 years, 4 months ago) by tgl
ENH fixup layout based on comments from WJP.  Parse out a revision value.

Revision 9570  Directory Listing
Modified Wed May 20 20:44:24 2009 UTC (8 years, 4 months ago) by wjp@bwh.harvard.edu
BUG: hoping this packing of Volumes frame fixes the jumping gui bug. Doesn't hurt; will test to see if it helps.

Revision 9568  Directory Listing
Modified Wed May 20 19:35:46 2009 UTC (8 years, 4 months ago) by wjp@bwh.harvard.edu
BUG: getting rid of debug leaks in fetchmi

Revision 9567  Directory Listing
Modified Wed May 20 17:00:05 2009 UTC (8 years, 4 months ago) by hayes
ENH: Removed RC from release name

Revision 9566  Directory Listing
Modified Tue May 19 22:25:04 2009 UTC (8 years, 4 months ago) by naucoin
STYLE: removing old license information

Revision 9564  Directory Listing
Modified Tue May 19 21:57:03 2009 UTC (8 years, 4 months ago) by barre
ENH: linking

Revision 9563  Directory Listing
Modified Tue May 19 21:26:13 2009 UTC (8 years, 4 months ago) by barre
ENH: fix linking issue in ChangeTrackerTest

Revision 9561  Directory Listing
Modified Tue May 19 21:15:08 2009 UTC (8 years, 4 months ago) by wjp@bwh.harvard.edu
ENH: selecting the MRML option for SlicerDataType by default.

Revision 9558  Directory Listing
Modified Tue May 19 20:26:16 2009 UTC (8 years, 4 months ago) by wjp@bwh.harvard.edu
ENH: added FiberBundle Support to FetchMI

Revision 9557  Directory Listing
Modified Tue May 19 19:44:00 2009 UTC (8 years, 4 months ago) by tgl
ENH follow coding convention in header file, fixup parsing out of the s3ext URI

Revision 9555  Directory Listing
Modified Tue May 19 18:57:05 2009 UTC (8 years, 4 months ago) by tgl
ENH do some validation that an install or uninstall has been done before moving forward, fixup select all to be correct for the context

Revision 9554  Directory Listing
Modified Tue May 19 18:55:50 2009 UTC (8 years, 4 months ago) by tgl
ENH SafeDownCast prefered

Revision 9553  Directory Listing
Modified Tue May 19 18:37:15 2009 UTC (8 years, 4 months ago) by wjp@bwh.harvard.edu
BUG: changing an ErrorMacro to a DebugMacro

Revision 9552  Directory Listing
Modified Tue May 19 18:34:20 2009 UTC (8 years, 4 months ago) by wjp@bwh.harvard.edu
BUG: ack, fixing a typo

Revision 9551  Directory Listing
Modified Tue May 19 18:30:50 2009 UTC (8 years, 4 months ago) by wjp@bwh.harvard.edu
BUG: updated the toolbar images and description to include the Extension Wizard

Revision 9550  Directory Listing
Modified Tue May 19 17:46:25 2009 UTC (8 years, 4 months ago) by tgl
ENH don't select if download has already resulted in success

Revision 9548  Directory Listing
Modified Tue May 19 17:16:14 2009 UTC (8 years, 4 months ago) by tgl
ENH alignment checkboxes and icons to the center of the columns

Revision 9545  Directory Listing
Modified Tue May 19 15:53:33 2009 UTC (8 years, 4 months ago) by pieper
BUG: fix packing of editor options to avoid flashing GUI in threshold effect.  other misc fixes

Revision 9544  Directory Listing
Modified Tue May 19 04:48:39 2009 UTC (8 years, 4 months ago) by tgl
ENH trying to polish the UI

Revision 9543  Directory Listing
Modified Tue May 19 04:48:16 2009 UTC (8 years, 4 months ago) by tgl
ENH use the app'
s extensions directory

Revision 9542  Directory Listing
Modified Tue May 19 04:47:10 2009 UTC (8 years, 4 months ago) by tgl
ENH add an extensions download directory, so that the user may decide where the ZIP packages of the extensions should go

Revision 9539  Directory Listing
Modified Mon May 18 21:37:03 2009 UTC (8 years, 4 months ago) by pieper
BUG: merge fixes from the trunk

Revision 9534  Directory Listing
Modified Mon May 18 21:12:21 2009 UTC (8 years, 4 months ago) by wjp@bwh.harvard.edu
ENH: added way to distinguish a fiber bundle from an ordinary vtk or vtp model file.

Revision 9532  Directory Listing
Modified Mon May 18 20:10:13 2009 UTC (8 years, 4 months ago) by pieper
BUG: merge fixes from the trunk.  Volume rendering merge was done manually since cuda support was added to the trunk.

Revision 9529  Directory Listing
Modified Mon May 18 19:30:12 2009 UTC (8 years, 4 months ago) by pieper
BUG: merge fix from trunk

Revision 9526  Directory Listing
Modified Mon May 18 19:06:48 2009 UTC (8 years, 4 months ago) by pieper
BUG: merge fix from the trunk

Revision 9523  Directory Listing
Modified Mon May 18 14:55:50 2009 UTC (8 years, 4 months ago) by wjp@bwh.harvard.edu
BUG: caught two toplevels assigning a master window that hasn't been created yet. Now setting them after master created.

Revision 9522  Directory Listing
Modified Mon May 18 00:38:53 2009 UTC (8 years, 4 months ago) by alexy
ENH: added EndoNavTracking module

Revision 9521  Directory Listing
Modified Sun May 17 23:11:30 2009 UTC (8 years, 4 months ago) by alexy
ENH: added EndoNavTracking module

Revision 9520  Directory Listing
Modified Sun May 17 22:20:52 2009 UTC (8 years, 4 months ago) by alexy
ENHL fixed compile error

Revision 9519  Directory Listing
Modified Sun May 17 20:54:27 2009 UTC (8 years, 4 months ago) by pieper
BUG: remove unneeded file

Revision 9516  Directory Listing
Modified Sun May 17 19:20:24 2009 UTC (8 years, 4 months ago) by alexy
ENH: Create branch

Revision 9515  Directory Listing
Modified Sun May 17 19:19:58 2009 UTC (8 years, 4 months ago) by alexy
ENH: remove branch

Revision 9514  Directory Listing
Modified Sun May 17 19:18:16 2009 UTC (8 years, 4 months ago) by alexy
ENH: Endoscopy tracking branch

Revision 9510  Directory Listing
Modified Sat May 16 11:30:26 2009 UTC (8 years, 4 months ago) by tgl
ENH implement homepage link and fixup description display.  Still need to match font.

Revision 9509  Directory Listing
Modified Sat May 16 10:20:59 2009 UTC (8 years, 4 months ago) by tgl
ENH add extension manager to launch when the Modules Refresh button is clicked

Revision 9508  Directory Listing
Modified Sat May 16 01:15:00 2009 UTC (8 years, 4 months ago) by clisle
ENH: moved colors and visibility controls to MimxActorBase;  ViewProperties now works and controls & colors surfaces, bblocks, and meshes

Revision 9501  Directory Listing
Modified Fri May 15 16:32:39 2009 UTC (8 years, 4 months ago) by clisle
ENH: adding color passthrough to Surface actor class

Revision 9500  Directory Listing
Modified Fri May 15 14:53:51 2009 UTC (8 years, 4 months ago) by pieper
BUG: merge patch from trunk

Revision 9496  Directory Listing
Modified Thu May 14 21:18:58 2009 UTC (8 years, 4 months ago) by pieper
BUG: merge bug fixes from trunk

Revision 9492  Directory Listing
Modified Thu May 14 20:27:28 2009 UTC (8 years, 4 months ago) by wjp@bwh.harvard.edu
BUG: turned off ITKDEBUG macro in registerimages for visual studio 2003.NET compatibility

Revision 9491  Directory Listing
Modified Thu May 14 20:01:59 2009 UTC (8 years, 4 months ago) by wjp@bwh.harvard.edu
BUG: merged cmake logic from trunk

Revision 9490  Directory Listing
Modified Thu May 14 18:45:38 2009 UTC (8 years, 4 months ago) by wjp@bwh.harvard.edu
BUG: fixing logic that allows user to select a don't-show-on-startup option

Revision 9489  Directory Listing
Modified Thu May 14 18:44:28 2009 UTC (8 years, 4 months ago) by wjp@bwh.harvard.edu
BUG: removing modal dialogs from Slicer's theme

Revision 9488  Directory Listing
Modified Thu May 14 18:43:57 2009 UTC (8 years, 4 months ago) by wjp@bwh.harvard.edu
ENH: Adding attribution for CTSC

Revision 9485  Directory Listing
Modified Thu May 14 13:40:01 2009 UTC (8 years, 4 months ago) by clisle
ENH: Continuing modifyications of meshing to use MRMLDisplayNodes instead of MimxActors for rendering.  

Revision 9483  Directory Listing
Modified Thu May 14 04:45:34 2009 UTC (8 years, 4 months ago) by tgl
ENH merging changes from trunk related to extensions wizard

Revision 9474  Directory Listing
Modified Wed May 13 18:06:30 2009 UTC (8 years, 4 months ago) by hayes
BUG: reverted to previous revision while debugging on MSVC

Revision 9470  Directory Listing
Modified Tue May 12 21:24:53 2009 UTC (8 years, 4 months ago) by naucoin
BUG: fix for setting home module when starting up with --no-modules, bug 582

Revision 9466  Directory Listing
Modified Tue May 12 19:01:26 2009 UTC (8 years, 4 months ago) by hayes
ENH: merged ITK version checks from trunk

Revision 9463  Directory Listing
Modified Tue May 12 18:21:56 2009 UTC (8 years, 4 months ago) by wjp@bwh.harvard.edu
ENH: updated web icon to match loadable module wizard's icon

Revision 9462  Directory Listing
Modified Tue May 12 18:20:42 2009 UTC (8 years, 4 months ago) by wjp@bwh.harvard.edu
ENH: icons and tooltip changes for LoadableModule Wizard

Revision 9461  Directory Listing
Modified Tue May 12 18:19:15 2009 UTC (8 years, 4 months ago) by wjp@bwh.harvard.edu
ENH: updated acknowledgement

Revision 9460  Directory Listing
Modified Tue May 12 14:56:15 2009 UTC (8 years, 4 months ago) by pieper
BUG: implement Alex's fix for the stl issue

Revision 9459  Directory Listing
Modified Tue May 12 13:38:49 2009 UTC (8 years, 4 months ago) by pieper
BUG: avoid calling erase that may invalidate iterator

Revision 9453  Directory Listing
Modified Mon May 11 20:22:01 2009 UTC (8 years, 4 months ago) by wjp@bwh.harvard.edu
BUG: fixed redef of image_www

Revision 9451  Directory Listing
Modified Mon May 11 19:34:59 2009 UTC (8 years, 4 months ago) by wjp@bwh.harvard.edu
ENH: new image data for loadable modules

Revision 9449  Directory Listing
Modified Mon May 11 19:33:12 2009 UTC (8 years, 4 months ago) by wjp@bwh.harvard.edu
ENH: Added new resources for loadable modules

Revision 9448  Directory Listing
Modified Mon May 11 17:42:43 2009 UTC (8 years, 4 months ago) by pieper
BUG: port orientation fix from trunk to release branch

Revision 9446  Directory Listing
Modified Mon May 11 15:27:04 2009 UTC (8 years, 4 months ago) by vrnova
ENH: cpu ray cast highest quality parameter adjustment

Revision 9444  Directory Listing
Modified Sun May 10 10:57:38 2009 UTC (8 years, 4 months ago) by wjp@bwh.harvard.edu
ENH: rolling back changes in models gui; reusing data gui's widgets.

Revision 9441  Directory Listing
Modified Sat May 9 14:23:32 2009 UTC (8 years, 4 months ago) by alexy
BUG-FIXED: clear undo/redo stack after creating everything

Revision 9435  Directory Listing
Modified Fri May 8 19:08:51 2009 UTC (8 years, 4 months ago) by naucoin
BUG: avoid crashes if the data gui isn't built yet

Revision 9427  Directory Listing
Modified Fri May 8 09:56:37 2009 UTC (8 years, 4 months ago) by wjp@bwh.harvard.edu
BUG: disabled the EnableAsynchronousIO option in the interface to match the disabled option in the CacheAndDataIOManagerGUI

Revision 9424  Directory Listing
Modified Thu May 7 20:35:29 2009 UTC (8 years, 4 months ago) by wjp@bwh.harvard.edu
BUG: adding new dialogs to models gui instead of using data gui's widgets

Revision 9418  Directory Listing
Modified Wed May 6 22:13:42 2009 UTC (8 years, 4 months ago) by clisle
ENH: testing integration of meshing and slicer (2nd version with better MRML integration)

Revision 9415  Directory Listing
Modified Wed May 6 19:55:41 2009 UTC (8 years, 4 months ago) by fedorov
BUG: ROI sampling increment can be 0, causing infinite loop

Revision 9406  Directory Listing
Modified Mon May 4 22:22:22 2009 UTC (8 years, 4 months ago) by clisle
BUG: change default branch to be this testing branch, not the trunk anymore. 

Revision 9403  Directory Listing
Modified Mon May 4 20:33:32 2009 UTC (8 years, 4 months ago) by clisle
ENH: Creating branch for second Iowa Meshing Integration

Revision 9399  Directory Listing
Modified Sun May 3 16:27:27 2009 UTC (8 years, 4 months ago) by alexy
BUG-FIXED: create missing filenames in snapshot's storage nodes

Revision 9394  Directory Listing
Modified Sat May 2 13:45:18 2009 UTC (8 years, 4 months ago) by wjp@bwh.harvard.edu
ENH: revised imagedata

Revision 9391  Directory Listing
Modified Sat May 2 13:17:20 2009 UTC (8 years, 4 months ago) by wjp@bwh.harvard.edu
ENH: tweaked icons per nicole's feedback

Revision 9389  Directory Listing
Modified Fri May 1 21:05:19 2009 UTC (8 years, 4 months ago) by fedorov
BUG: Disable saving results log by default -- this crashes on some Windows machines,
causing memory leak. Not essential for testing functionality.

Revision 9386  Directory Listing
Modified Fri May 1 19:29:13 2009 UTC (8 years, 4 months ago) by alexy
BUG-FIXED: 560. Fixed mrml and widget events propagation for all kinds of volume display widgets and threshold/window level widget's histogram. Made it work with tear down and recreation of widgets.

Revision 9383  Directory Listing
Modified Fri May 1 17:20:00 2009 UTC (8 years, 4 months ago) by naucoin
BUG: the node selector may have a new fid list selected if we deleted a fid list and there are more fid lists in the scene, so update the gui with it

Revision 9382  Directory Listing
Modified Fri May 1 16:17:40 2009 UTC (8 years, 4 months ago) by naucoin
BUG: fix for the deleting of fids and lists

Revision 9378  Directory Listing
Modified Fri May 1 03:19:03 2009 UTC (8 years, 4 months ago) by tokuda
ENH: clarified precedence at line 169 of vtkIGTLToMRMLImage.cxx

Revision 9375  Directory Listing
Modified Thu Apr 30 21:12:13 2009 UTC (8 years, 4 months ago) by hliu
BUG: Enabled ProstateNav module.

Revision 9374  Directory Listing
Modified Thu Apr 30 21:09:57 2009 UTC (8 years, 4 months ago) by hliu
BUG: fixed memory leaks.

Revision 9373  Directory Listing
Modified Thu Apr 30 21:09:44 2009 UTC (8 years, 4 months ago) by hliu
BUG: fixed memory leaks.

Revision 9370  Directory Listing
Modified Thu Apr 30 18:50:41 2009 UTC (8 years, 4 months ago) by naucoin
BUG: fixing bug 572, removing the pointer to the list node, use the ID to get the active one first in all cases. Clear out the list box if the id is null. Fixed some indentation, added a null check on a pointer. TODO: figure out memory leak with observer manager.

Revision 9369  Directory Listing
Modified Thu Apr 30 17:59:22 2009 UTC (8 years, 4 months ago) by fedorov
STYLE: TumorDiameterEstimation is not used anywhere, not necessary for 3.4 release.

Revision 9367  Directory Listing
Modified Thu Apr 30 17:22:15 2009 UTC (8 years, 4 months ago) by pieper
COMP: fix compile warnings

Revision 9366  Directory Listing
Modified Thu Apr 30 17:14:40 2009 UTC (8 years, 4 months ago) by pieper
BUG: fix new/delete array mismatch

Revision 9365  Directory Listing
Modified Thu Apr 30 14:27:40 2009 UTC (8 years, 4 months ago) by pieper
STYLE: merge from trunk (remove debug prints)

Revision 9356  Directory Listing
Modified Wed Apr 29 19:30:54 2009 UTC (8 years, 5 months ago) by pieper
BUG: fix leaks

Revision 9355  Directory Listing
Modified Wed Apr 29 18:06:59 2009 UTC (8 years, 5 months ago) by wjp@bwh.harvard.edu
ENH: one more image for fiducials

Revision 9354  Directory Listing
Modified Wed Apr 29 18:05:59 2009 UTC (8 years, 5 months ago) by wjp@bwh.harvard.edu
ENH: new image data for fiducials gui rework

Revision 9353  Directory Listing
Modified Wed Apr 29 18:03:51 2009 UTC (8 years, 5 months ago) by wjp@bwh.harvard.edu
ENH: adding images, resources and icons for fiducials gui updates

Revision 9352  Directory Listing
Modified Wed Apr 29 17:50:14 2009 UTC (8 years, 5 months ago) by wjp@bwh.harvard.edu
BUG: adding correct image data to match encoded version in resource

Revision 9351  Directory Listing
Modified Wed Apr 29 12:17:33 2009 UTC (8 years, 5 months ago) by pieper
COMP: fixes to allow warning-free compilation (avoid instantiating data types that will generate warnings in ITK code)

Revision 9349  Directory Listing
Modified Tue Apr 28 20:51:33 2009 UTC (8 years, 5 months ago) by naucoin
STYLE: fixed grammar in dialogue box

Revision 9344  Directory Listing
Modified Tue Apr 28 15:12:11 2009 UTC (8 years, 5 months ago) by pieper
COMP: merge variable order fix from trunk

Revision 9342  Directory Listing
Modified Tue Apr 28 14:04:53 2009 UTC (8 years, 5 months ago) by jvs
ENH: code cleaning

Revision 9341  Directory Listing
Modified Tue Apr 28 13:51:15 2009 UTC (8 years, 5 months ago) by jvs
ENH: code cleaning

Revision 9339  Directory Listing
Modified Tue Apr 28 12:44:00 2009 UTC (8 years, 5 months ago) by millerjv
BUG: Merge trunk revision 9287 onto branch. Fix allows for multiple SliceControllerWidgets to manipulate a single SliceNode

Revision 9337  Directory Listing
Modified Mon Apr 27 21:13:19 2009 UTC (8 years, 5 months ago) by pieper
STYLE: fix leaks

Revision 9325  Directory Listing
Modified Mon Apr 27 15:10:58 2009 UTC (8 years, 5 months ago) by fedorov
BUG: iteration parameter setup bogus

Revision 9321  Directory Listing
Modified Fri Apr 24 17:49:29 2009 UTC (8 years, 5 months ago) by wjp@bwh.harvard.edu
BUG: checking in Yumin's fix for text in node selectors

Revision 9318  Directory Listing
Modified Fri Apr 24 17:12:33 2009 UTC (8 years, 5 months ago) by wjp@bwh.harvard.edu
BUG: re-enabling backface culling

Revision 9308  Directory Listing
Modified Fri Apr 24 15:12:55 2009 UTC (8 years, 5 months ago) by pieper
BUG: remove out of date slicer license text

Revision 9305  Directory Listing
Modified Fri Apr 24 00:39:48 2009 UTC (8 years, 5 months ago) by hliu
BUG: disabled ProstateNav for leak fix.

Revision 9303  Directory Listing
Modified Thu Apr 23 18:50:14 2009 UTC (8 years, 5 months ago) by pieper
BUG: migrate leak fix from trunk

Revision 9302  Directory Listing
Modified Thu Apr 23 18:48:33 2009 UTC (8 years, 5 months ago) by pieper
BUG: migrate leak fix from trunk

Revision 9301  Directory Listing
Modified Thu Apr 23 18:45:39 2009 UTC (8 years, 5 months ago) by pieper
BUG: migrate leak fix from trunk

Revision 9300  Directory Listing
Modified Thu Apr 23 18:37:22 2009 UTC (8 years, 5 months ago) by pieper
BUG: migrate windows cmake bug fix from trunk COMP: ensure that RegisterImages is only enabled when the correct ITK build is available

Revision 9297  Directory Listing
Modified Thu Apr 23 18:15:43 2009 UTC (8 years, 5 months ago) by hliu
ENH: re-enabled ProstateNav module.

Revision 9296  Directory Listing
Modified Thu Apr 23 17:27:08 2009 UTC (8 years, 5 months ago) by pieper
COMP: ensure that RegisterImages is only enabled when the correct ITK build is available

Revision 9294  Directory Listing
Modified Thu Apr 23 17:25:14 2009 UTC (8 years, 5 months ago) by hliu
BUG: fixed a bug causing Slicer crash.

Revision 9293  Directory Listing
Modified Thu Apr 23 17:14:21 2009 UTC (8 years, 5 months ago) by wjp@bwh.harvard.edu
ENH: cleaning up -- no need to set parent on loadscenedialog

Revision 9291  Directory Listing
Modified Thu Apr 23 16:55:48 2009 UTC (8 years, 5 months ago) by alexy
ENH: read absolute path in Storage and Snapshots nodes and write relative path

Revision 9289  Directory Listing
Modified Thu Apr 23 16:45:33 2009 UTC (8 years, 5 months ago) by wjp@bwh.harvard.edu
ENH: setting master window prior to creating loadscenedialog

Revision 9284  Directory Listing
Modified Wed Apr 22 23:00:23 2009 UTC (8 years, 5 months ago) by pieper
COMP: remove unsupported build methods

Revision 9283  Directory Listing
Modified Wed Apr 22 23:00:01 2009 UTC (8 years, 5 months ago) by pieper
COMP: fix the version numbers

Revision 9282  Directory Listing
Modified Wed Apr 22 21:18:45 2009 UTC (8 years, 5 months ago) by pieper
ENH: enable teem access from python

Revision 9281  Directory Listing
Modified Wed Apr 22 21:14:08 2009 UTC (8 years, 5 months ago) by pieper
BUG: enable _ctypes module in python builds

Revision 9280  Directory Listing
Modified Wed Apr 22 21:09:32 2009 UTC (8 years, 5 months ago) by pieper
BUG: merge bug fix from trunk

Revision 9274  Directory Listing
Modified Wed Apr 22 16:06:26 2009 UTC (8 years, 5 months ago) by naucoin
BUG: fix the parent frame of the measurement frame so it will collapse

Revision 9264  Directory Listing
Modified Tue Apr 21 01:42:46 2009 UTC (8 years, 5 months ago) by hayes
ENH: Changed build name to 3.4

Revision 9260  Directory Listing
Modified Sun Apr 19 22:18:36 2009 UTC (8 years, 5 months ago) by hliu
BUG: fixed image reformatting orientation for neuro navigation.

Revision 9247  Directory Listing
Modified Thu Apr 16 20:25:22 2009 UTC (8 years, 5 months ago) by naucoin
BUG: hide the orientation columns, as the values are not used consistently

Revision 9244  Directory Listing
Modified Thu Apr 16 17:53:27 2009 UTC (8 years, 5 months ago) by hayes
BUG: Changed logical AND to OR

Revision 9242  Directory Listing
Modified Thu Apr 16 16:05:07 2009 UTC (8 years, 5 months ago) by naucoin
STYLE: bump the name for the release branch

Revision 9241  Directory Listing
Modified Thu Apr 16 15:20:09 2009 UTC (8 years, 5 months ago) by naucoin
BUG: switch the branch to check out the right tag

Revision 9240  Directory Listing
Modified Thu Apr 16 13:18:16 2009 UTC (8 years, 5 months ago) by pieper
ENH: branch for 3.4 release work

Revision 9239  Directory Listing
Modified Thu Apr 16 13:17:42 2009 UTC (8 years, 5 months ago) by pieper
BUG: remove incorrect branch

Revision 9238  Directory Listing
Modified Thu Apr 16 13:17:22 2009 UTC (8 years, 5 months ago) by pieper
ENH: branch for 3.4 release work

Revision 9237  Directory Listing
Modified Thu Apr 16 13:15:35 2009 UTC (8 years, 5 months ago) by pieper
BUG: remove incorrect branch

Revision 9234  Directory Listing
Modified Wed Apr 15 22:54:33 2009 UTC (8 years, 5 months ago) by pieper
ENH: create release branch for slicer3.4

Revision 9053  Directory Listing
Modified Sun Apr 5 03:17:14 2009 UTC (8 years, 5 months ago) by vrnova
ENH: new VolumeRendering module checked in (same with trunk)

Revision 8944  Directory Listing
Modified Mon Mar 23 19:11:12 2009 UTC (8 years, 6 months ago) by vrnova
ENH: New VolumeRendering GUI and logic. Code cleaning up.

Revision 8938  Directory Listing
Modified Mon Mar 23 14:26:38 2009 UTC (8 years, 6 months ago) by kurczce
ENH
Updated default parameter settings and algorithms in Vessel Segmentation stuff

Revision 8928  Directory Listing
Modified Fri Mar 20 20:05:28 2009 UTC (8 years, 6 months ago) by vrnova
ENH: new volume rendering GUI and code clean up

Revision 8890  Directory Listing
Modified Mon Mar 16 19:37:30 2009 UTC (8 years, 6 months ago) by clisle
BUG: mods to VisSeg - working to create label maps from segmentation output

Revision 8882  Directory Listing
Modified Mon Mar 16 01:33:29 2009 UTC (8 years, 6 months ago) by clisle
BUG: mods to VisSeg - resolving issues to create label maps from segmentation output

Revision 8868  Directory Listing
Modified Wed Mar 11 19:16:05 2009 UTC (8 years, 6 months ago) by kurczce
ENH
Added Line Filter CLI

Revision 8867  Directory Listing
Modified Wed Mar 11 19:13:52 2009 UTC (8 years, 6 months ago) by kurczce
ENH
Added Line Filter CLI

Revision 8860  Directory Listing
Modified Mon Mar 9 22:30:14 2009 UTC (8 years, 6 months ago) by clisle
ENH: merged info from the Slicer trunk into the NCI branch to try to enable iPython in the NCI branch.  Basically updated many modules of the slicer source. It will cause a rebuild.  This also fixed the CellSegmentation crash (and that is why I am pushing the update).

Revision 8856  Directory Listing
Modified Mon Mar 9 14:01:51 2009 UTC (8 years, 6 months ago) by clisle
BUG: adding more fiducial handling on visSeg.  Segmentation now runs based on fiducial points.   Display of 2D segmentation is next. 

Revision 8775  Directory Listing
Modified Fri Feb 27 21:18:11 2009 UTC (8 years, 7 months ago) by kurczce
ENH
Added parameters to the GUI for the Vessel Anistropic Diffusion Command Line Module.
Added two new CLI 
*Vesselness Measure
*Vessel Anistropic Diffusion (a different version)

Revision 8739  Directory Listing
Modified Tue Feb 24 15:05:18 2009 UTC (8 years, 7 months ago) by vrnova
ENH: testing

Revision 8734  Directory Listing
Modified Mon Feb 23 19:22:05 2009 UTC (8 years, 7 months ago) by clisle
BUG: fixed configuration filename spelling

Revision 8733  Directory Listing
Modified Mon Feb 23 18:33:21 2009 UTC (8 years, 7 months ago) by clisle
ENH: Added all-in-one VesselEnhancingDiffusion [Manniesing2009] in Libs/itkExtensions and added matching VesselEnhancingDiffusion CLI module.  It seems to only works for volumes with short voxeltype.

Revision 8688  Directory Listing
Modified Wed Feb 18 21:04:19 2009 UTC (8 years, 7 months ago) by clisle
BUG: trying to fix the crash based on fiducials in visseg module

Revision 8637  Directory Listing
Modified Fri Feb 13 22:59:24 2009 UTC (8 years, 7 months ago) by clisle
BUG: change slicer_variables to point to the correct version upon refresh

Revision 8592  Directory Listing
Modified Fri Feb 6 21:52:58 2009 UTC (8 years, 7 months ago) by clisle
ENH: first version of cell wall segment module (Dean's algorithm) integrated with Slicer.  This version only loads the file and runs the 2D segmentation.  No results are displayed yet.  Fiducials are being accessed, but not fed to the algorithm yet.

Revision 8498  Directory Listing
Modified Mon Feb 2 17:54:07 2009 UTC (8 years, 7 months ago) by clisle
ENH: branch for NCI development

Revision 8497  Directory Listing
Modified Mon Feb 2 17:53:00 2009 UTC (8 years, 7 months ago) by clisle
ENH: making directory for NCI branches

Revision 8251  Directory Listing
Modified Fri Jan 2 18:00:41 2009 UTC (8 years, 8 months ago) by millerjv
ENH: work in progress on reloading modules

Revision 8250  Directory Listing
Modified Fri Jan 2 17:57:59 2009 UTC (8 years, 8 months ago) by millerjv
ENH: work in progress for reloading modules

Revision 8178  Directory Listing
Modified Tue Dec 23 05:06:36 2008 UTC (8 years, 9 months ago) by barre
ENH: Creating branch cameraviewhell with code moved from trunk

Revision 8044  Directory Listing
Modified Wed Dec 3 19:18:32 2008 UTC (8 years, 9 months ago) by clisle
BUG: eliminated crash on Mac Leopard by disabling display of UnstructuredGridDisplayNode subclasses. 

Revision 8029  Directory Listing
Modified Tue Dec 2 14:49:40 2008 UTC (8 years, 9 months ago) by clisle
BUG - Adding renamed directory for meshing module.  Previous commit was missing this directory.

Revision 8028  Directory Listing
Modified Tue Dec 2 14:48:57 2008 UTC (8 years, 9 months ago) by clisle
BUG - Adding renamed directory for meshing module.  Previous commit was missing this directory.

Revision 8023  Directory Listing
Modified Tue Dec 2 02:01:01 2008 UTC (8 years, 9 months ago) by vmagnotta
BUG: Fixed improper indexing to get the selected mesh for laplacian smoothing

Revision 8017  Directory Listing
Modified Mon Dec 1 22:31:37 2008 UTC (8 years, 9 months ago) by clisle
ENH: renaming meshing directory

Revision 7975  Directory Listing
Modified Tue Nov 25 19:04:03 2008 UTC (8 years, 10 months ago) by pieper
BUG: work around incorrect return code (127) generated by successfully completed kwsys process.  Also additional diagnostics for tests which do fail.

Revision 7931  Directory Listing
Modified Fri Nov 21 02:14:59 2008 UTC (8 years, 10 months ago) by vmagnotta
ENH: Minor chnages to cleanup the GUI

Revision 7930  Directory Listing
Modified Fri Nov 21 02:13:50 2008 UTC (8 years, 10 months ago) by vmagnotta
ENH: Used the base class Help frame instead of a custon one

Revision 7923  Directory Listing
Modified Thu Nov 20 21:40:30 2008 UTC (8 years, 10 months ago) by vmagnotta
ENH: Added the Application settings for the module

Revision 7922  Directory Listing
Modified Thu Nov 20 21:39:46 2008 UTC (8 years, 10 months ago) by vmagnotta
ENH: Added the IA-FEMesh property settings to the
the User Interface Panel.

Revision 7920  Directory Listing
Modified Thu Nov 20 19:53:24 2008 UTC (8 years, 10 months ago) by vmagnotta
BUG: It appears that the problem with the resizing
of the notebook is that the UserInterfacePanel that
is used does not fill in both the X and Y directions.
TO get around this limitation a call to
SetMinimumHeight() for our noteboot was added that 
will expand the notebook beyond the typical size that
is needed.

Revision 7919  Directory Listing
Modified Thu Nov 20 03:42:07 2008 UTC (8 years, 10 months ago) by vmagnotta
BUG: Fixed Widget Interactionsassociated with the Slicer dolly remaining active

Revision 7914  Directory Listing
Modified Wed Nov 19 15:56:29 2008 UTC (8 years, 10 months ago) by vmagnotta
BUG: Fixed typos in the name of the header files.
This was did not manifest under windows because
it is not case sensitive.\

Revision 7907  Directory Listing
Modified Wed Nov 19 03:33:53 2008 UTC (8 years, 10 months ago) by vmagnotta
ENH: Added required files and class prototypes for building shared libraries under Windows

Revision 7906  Directory Listing
Modified Wed Nov 19 03:30:50 2008 UTC (8 years, 10 months ago) by vmagnotta
ENH: Added required files and class prototypes for building shared libraries under Windows

Revision 7832  Directory Listing
Modified Mon Nov 10 22:47:28 2008 UTC (8 years, 10 months ago) by clisle
ENH: Added 10,10 interactor size fix support in EditBBGroup since this problem showed up in RHEL 5.0 even with a fresh VTK-5-2 checkout.  Added black background to the states the module sets and restores upon entry/exit. 

Revision 7822  Directory Listing
Modified Mon Nov 10 02:09:14 2008 UTC (8 years, 10 months ago) by clisle
ENH: Improved Enter/Exit commands on meshing module restore the state of meshing axes and view. Users of meshing module won't have to learn as many of the slicer controls initially this way. More work still needed on adding and removing the ApplicationSettings Interface. 

Revision 7821  Directory Listing
Modified Mon Nov 10 02:06:01 2008 UTC (8 years, 10 months ago) by clisle
BUG: removed callback line in UnstructuredGridWidget that forced Dolly mode on when UGrid widget was displayed. 

Revision 7814  Directory Listing
Modified Sat Nov 8 17:07:16 2008 UTC (8 years, 10 months ago) by clisle
BUG: changed to specific teem revision to prevent build problems.  Teem revision from mid-october.  Solution found by Vince. 

Revision 7769  Directory Listing
Modified Wed Oct 29 23:21:05 2008 UTC (8 years, 10 months ago) by clisle
BUG: added MRML NullDisplay node; needed for cmakefile that was accidentally committed prematurely. 

Revision 7768  Directory Listing
Modified Wed Oct 29 23:19:43 2008 UTC (8 years, 10 months ago) by clisle
ENH: removed some debug print statements;  added Orientation Axis enable/disable as we enter/exit the meshing module

Revision 7765  Directory Listing
Modified Wed Oct 29 19:53:42 2008 UTC (8 years, 10 months ago) by clisle
ENH: fixed the initialization state of the full/subset selection button: To be consistent with standalone version, this needed its selection set off initially.  Tested widget modes for partial selection, assigning material properties and boundary conditions, etc. 

Revision 7760  Directory Listing
Modified Wed Oct 29 07:37:08 2008 UTC (8 years, 11 months ago) by clisle
BUG: meshing menus weren't redrawing - so added ForceWidgetRedraw() method at the MimxMainWindow and added this to the UpdateEnableState methods for MimxGroupBase and MimxMenuGroup so it is invoked whenever UI panels need to change their state.

Revision 7759  Directory Listing
Modified Wed Oct 29 02:18:37 2008 UTC (8 years, 11 months ago) by clisle
BUG: missing a CMakeLists.txt file in the meshing directory; also changed the Slicer tag in slicer_variables to point to the v-1-1 meshing branch so getbuildtest runs won't change it back to the trunk. 

Revision 7754  Directory Listing
Modified Tue Oct 28 14:24:10 2008 UTC (8 years, 11 months ago) by clisle
BUG: removing old branch; use V-1-1 branch instead

Revision 7753  Directory Listing
Modified Tue Oct 28 13:03:27 2008 UTC (8 years, 11 months ago) by clisle
ENH: adding new meshing v-1-1 IaFeMesh modified for slicer integration

Revision 7752  Directory Listing
Modified Tue Oct 28 12:41:31 2008 UTC (8 years, 11 months ago) by clisle
ENH: adding new meshing v-1-1 IaFeMesh modified for slicer integration

Revision 7751  Directory Listing
Modified Tue Oct 28 12:36:48 2008 UTC (8 years, 11 months ago) by clisle
ENH: adding new meshing v-1-1 IaFeMesh modified for slicer integration

Revision 7750  Directory Listing
Modified Tue Oct 28 12:35:23 2008 UTC (8 years, 11 months ago) by clisle
ENH: adding new meshing v-1-1 IaFeMesh modified for slicer integration

Revision 7749  Directory Listing
Modified Tue Oct 28 12:33:49 2008 UTC (8 years, 11 months ago) by clisle
ENH: adding new meshing v-1-1 IaFeMesh modified for slicer integration

Revision 7748  Directory Listing
Modified Tue Oct 28 12:32:17 2008 UTC (8 years, 11 months ago) by clisle
BUG: permissions wrong; deleting and reinstalling Widgets directory

Revision 7747  Directory Listing
Modified Tue Oct 28 06:23:34 2008 UTC (8 years, 11 months ago) by clisle
ENH: adding new meshing v-1-1 IaFeMesh modified for slicer integration

Revision 7746  Directory Listing
Modified Tue Oct 28 06:19:32 2008 UTC (8 years, 11 months ago) by clisle
ENH: adding new meshing v-1-1 IaFeMesh modified for slicer integration

Revision 7745  Directory Listing
Modified Tue Oct 28 06:08:59 2008 UTC (8 years, 11 months ago) by clisle
ENH: adding new meshing v-1-1 IaFeMesh modified for slicer integration

Revision 7744  Directory Listing
Modified Tue Oct 28 06:04:39 2008 UTC (8 years, 11 months ago) by clisle
ENH: adding new meshing v-1-1 IaFeMesh modified for slicer integration

Revision 7743  Directory Listing
Modified Tue Oct 28 05:53:10 2008 UTC (8 years, 11 months ago) by clisle
ENH: adding new meshing v-1-1 IaFeMesh modified for slicer integration

Revision 7742  Directory Listing
Modified Tue Oct 28 05:49:02 2008 UTC (8 years, 11 months ago) by clisle
ENH: adding new meshing v-1-1 IaFeMesh modified for slicer integration

Revision 7741  Directory Listing
Modified Tue Oct 28 02:19:41 2008 UTC (8 years, 11 months ago) by clisle
ENH: deleting old meshing directory to replace it with an enhanced v-1-1

Revision 7740  Directory Listing
Modified Tue Oct 28 02:14:57 2008 UTC (8 years, 11 months ago) by clisle
ENH: moving to v-1-1 version

Revision 7739  Directory Listing
Modified Tue Oct 28 02:10:36 2008 UTC (8 years, 11 months ago) by clisle
ENH: adding v-1-1 meshing module

Revision 7720  Directory Listing
Modified Tue Oct 21 17:01:08 2008 UTC (8 years, 11 months ago) by pieper
ENH: add support for full version of visual studio 9

Revision 7683  Directory Listing
Modified Tue Oct 14 21:34:38 2008 UTC (8 years, 11 months ago) by naucoin
BUG: added editing call back, as per trunk revision 6956

Revision 7677  Directory Listing
Modified Tue Oct 14 15:25:07 2008 UTC (8 years, 11 months ago) by naucoin
BUG: use the Standford2008 branch tag

Revision 7662  Directory Listing
Modified Sat Oct 11 03:43:49 2008 UTC (8 years, 11 months ago) by clisle
ENH: add new meshing module to Meshing5 branch

Revision 7661  Directory Listing
Modified Sat Oct 11 03:42:35 2008 UTC (8 years, 11 months ago) by clisle
BUG:copied whole tree, not just Slicer trunk; delete and try again

Revision 7660  Directory Listing
Modified Sat Oct 11 03:36:07 2008 UTC (8 years, 11 months ago) by clisle
ENH: add new meshing module

Revision 7564  Directory Listing
Modified Wed Sep 10 02:39:06 2008 UTC (9 years ago) by clisle
ENH: new version of IaFeMesh code with integrated GUI integration in process

Revision 7563  Directory Listing
Modified Wed Sep 10 02:27:10 2008 UTC (9 years ago) by clisle
ENH:Deleting obsolee BuildingBlock directory in Meshing Module

Revision 7562  Directory Listing
Modified Wed Sep 10 02:13:27 2008 UTC (9 years ago) by clisle
ENH: fourth version of Univ. of Iowa Finite Element Meshing Module

Revision 7523  Directory Listing
Modified Tue Sep 2 13:12:52 2008 UTC (9 years ago) by clisle
ENH: Cleanup old meshing versions before creating new current branch

Revision 7522  Directory Listing
Modified Tue Sep 2 13:08:48 2008 UTC (9 years ago) by clisle
ENH: Cleanup old meshing versions before creating new current branch

Revision 7465  Directory Listing
Modified Tue Aug 19 21:26:45 2008 UTC (9 years, 1 month ago) by pieper
ENH: create branch for slicer worksthop at Stanford on Sept 3, 2008

Revision 7443  Directory Listing
Modified Thu Aug 14 19:10:30 2008 UTC (9 years, 1 month ago) by wjp@bwh.harvard.edu
ENH: null pointer checking for application registry layout setting

Revision 7442  Directory Listing
Modified Thu Aug 14 17:33:16 2008 UTC (9 years, 1 month ago) by wjp@bwh.harvard.edu
ENH: backed out old layout state variable, no longer used.

Revision 7441  Directory Listing
Modified Thu Aug 14 17:31:58 2008 UTC (9 years, 1 month ago) by wjp@bwh.harvard.edu
ENH: using var containing GUI's current layout instead of MRML var for GUI's previous layout (intend to back this thing out of vtkMRMLLayoutNode eventually) to determine how to unpack and repack the layout.

Revision 7440  Directory Listing
Modified Thu Aug 14 17:29:15 2008 UTC (9 years, 1 month ago) by wjp@bwh.harvard.edu
ENH: revised FOVentries so they track MRML, but do not update MRML if they are dismissed without changing entry values.

Revision 7439  Directory Listing
Modified Thu Aug 14 17:28:16 2008 UTC (9 years, 1 month ago) by wjp@bwh.harvard.edu
ENH: commented out undo/redo ability in layout. Because layout changes change the size of SliceViewers, implicit FOV changes were being piled on to the undo stack too.

Revision 7432  Directory Listing
Modified Thu Aug 14 10:22:27 2008 UTC (9 years, 1 month ago) by wjp@bwh.harvard.edu
ENH: fixed scene snapshot gui bug due to multiple observers

Revision 7423  Directory Listing
Modified Sat Aug 9 11:24:22 2008 UTC (9 years, 1 month ago) by wjp@bwh.harvard.edu
ENH: fixed importing of catalog files.

Revision 7422  Directory Listing
Modified Fri Aug 8 20:57:28 2008 UTC (9 years, 1 month ago) by pieper
BUG: migrate fix from trunk to create unique model name each time effect is invoked

Revision 7421  Directory Listing
Modified Fri Aug 8 20:47:28 2008 UTC (9 years, 1 month ago) by pieper
BUG: migrate fix for name clash with existing storage nodes from trunk to branch

Revision 7409  Directory Listing
Modified Thu Aug 7 21:09:16 2008 UTC (9 years, 1 month ago) by naucoin
BUG-FIXED: porting fixes from the trunk, include, one model name without suffic, remove the colour nodes from the scene

Revision 7381  Directory Listing
Modified Fri Aug 1 14:08:03 2008 UTC (9 years, 1 month ago) by naucoin
BUG: darwin ppc still timing out on module discover, double the time out

Revision 7366  Directory Listing
Modified Wed Jul 30 16:41:44 2008 UTC (9 years, 1 month ago) by naucoin
BUG-FIXED: fixed mgz/mgh file writing, needed to convert the matrix back to RAS from LPS

Revision 7357  Directory Listing
Modified Tue Jul 29 20:34:26 2008 UTC (9 years, 2 months ago) by hayes
ENH: Point to new Visual Blog URL

Revision 7356  Directory Listing
Modified Tue Jul 29 17:44:15 2008 UTC (9 years, 2 months ago) by clisle
BUG - unstructured grids are displayable, but not loadable yet through the model GUI. A bug remains in the loading process. 

Revision 7354  Directory Listing
Modified Tue Jul 29 16:01:03 2008 UTC (9 years, 2 months ago) by naucoin
STYLE: print out messages when can't find packages

Revision 7349  Directory Listing
Modified Mon Jul 28 21:46:00 2008 UTC (9 years, 2 months ago) by pieper
ENH: migrate latest editor module from trunk to release branch

Revision 7331  Directory Listing
Modified Thu Jul 24 12:41:50 2008 UTC (9 years, 2 months ago) by pieper
BUG: apply patch for nvidia driver linux issue (apparently driver installation bug causes symbols to be undefined when dynamically loading libGL)

Revision 7315  Directory Listing
Modified Sun Jul 20 20:21:49 2008 UTC (9 years, 2 months ago) by clisle
ENH:  third revision of Univ. of Iowa FE Mesh module

Revision 7312  Directory Listing
Modified Fri Jul 18 20:30:02 2008 UTC (9 years, 2 months ago) by wjp@bwh.harvard.edu
ENH: fixed packing bug for CompareView. This is a temporary fix marked with TODO's in the code that will need to be addressed when we finally represent compareView in the vtkMRMLLayoutNode. Right now it's not saved in state, but the packing is less messy.

Revision 7310  Directory Listing
Modified Fri Jul 18 17:55:47 2008 UTC (9 years, 2 months ago) by naucoin
BUG: fixing colour names

Revision 7309  Directory Listing
Modified Fri Jul 18 17:50:00 2008 UTC (9 years, 2 months ago) by naucoin
BUG: force recalculation of win/level to trigger setting it when return from CLI

Revision 7308  Directory Listing
Modified Fri Jul 18 17:48:30 2008 UTC (9 years, 2 months ago) by clisle
ENH - making vtkMRMLUnstructuredGridNode and correspoding display and storage nodes subclasses of Model.  Modified Base/vtkSlicerModelLogic to look for and read unstructured grid datasets.  Display works but loading from a file doesn't correctly initialize the display node yet.

Revision 7303  Directory Listing
Modified Wed Jul 16 20:01:32 2008 UTC (9 years, 2 months ago) by wjp@bwh.harvard.edu
ENH: fixed *some* of the packing problems when switching between layouts. Still working on the compare view case

Revision 7301  Directory Listing
Modified Wed Jul 16 15:17:33 2008 UTC (9 years, 2 months ago) by wjp@bwh.harvard.edu
ENH: got rid of debug leaks

Revision 7297  Directory Listing
Modified Tue Jul 15 20:43:02 2008 UTC (9 years, 2 months ago) by wjp@bwh.harvard.edu
ENH: removing debugging comments

Revision 7296  Directory Listing
Modified Tue Jul 15 20:39:04 2008 UTC (9 years, 2 months ago) by wjp@bwh.harvard.edu
ENH: small cleanup of code -- getting rid of unnecessary local vars

Revision 7295  Directory Listing
Modified Tue Jul 15 20:37:58 2008 UTC (9 years, 2 months ago) by wjp@bwh.harvard.edu
ENH: improving QueryAtlas help text with newlines

Revision 7294  Directory Listing
Modified Tue Jul 15 20:37:26 2008 UTC (9 years, 2 months ago) by wjp@bwh.harvard.edu
ENH: stubbing out REMOTE_IO again (it had gotten partially unstubbed

Revision 7293  Directory Listing
Modified Tue Jul 15 20:36:36 2008 UTC (9 years, 2 months ago) by wjp@bwh.harvard.edu
ENH: cleaning up references to MRML to get rid of debug leaks

Revision 7285  Directory Listing
Modified Fri Jul 11 20:38:25 2008 UTC (9 years, 2 months ago) by wjp@bwh.harvard.edu
ENH: fixing crash on exit by releasing mutual references between SlicesGUI and applicationGUI in correct order

Revision 7281  Directory Listing
Modified Thu Jul 10 20:21:40 2008 UTC (9 years, 2 months ago) by naucoin
BUG: taking out duplicate code, as seen in rev 7189 to 7189 on the trunk

Revision 7280  Directory Listing
Modified Thu Jul 10 19:34:19 2008 UTC (9 years, 2 months ago) by wjp@bwh.harvard.edu
ENH: turning off chatty status text

Revision 7279  Directory Listing
Modified Thu Jul 10 19:19:41 2008 UTC (9 years, 2 months ago) by wjp@bwh.harvard.edu
ENH: fixed potentially null scale pointer in ProcessWidgetEvents

Revision 7268  Directory Listing
Modified Tue Jul 8 15:39:54 2008 UTC (9 years, 2 months ago) by demian
ENH: Fixed bug with visual studio

Revision 7252  Directory Listing
Modified Mon Jul 7 20:25:27 2008 UTC (9 years, 2 months ago) by millerjv
ENH: Merge of Compare View to the 3.2 branch. Needed to move across a few other patches from the trunk to mitigate crashes on exit.

Revision 7246  Directory Listing
Modified Fri Jul 4 18:18:16 2008 UTC (9 years, 2 months ago) by alexy
BUG: fixed the mrml references going in and out of scene snapshots

Revision 7231  Directory Listing
Modified Tue Jul 1 19:31:02 2008 UTC (9 years, 2 months ago) by demian
ENH: Names for the glyphable volumes display nodes changed

Revision 7229  Directory Listing
Modified Tue Jul 1 18:20:34 2008 UTC (9 years, 2 months ago) by demian
ENH: Finish adding the glyphvolume nodes to generalize glyphing

Revision 7228  Directory Listing
Modified Tue Jul 1 15:29:24 2008 UTC (9 years, 2 months ago) by demian
ENH: Decoupled part of the functionality of  vtkMRMLDiffusionTensorVolumeSliceDisplayNode to a new parent node vtkMRMLGlyphVolumeSliceDisplayNode

Revision 7227  Directory Listing
Modified Tue Jul 1 15:27:48 2008 UTC (9 years, 2 months ago) by demian
ENH: Decoupled part of the functionality of  vtkMRMLDiffusionTensorVolumeSliceDisplayNode to a new parent node vtkMRMLGlyphVolumeSliceDisplayNode

Revision 7226  Directory Listing
Modified Tue Jul 1 13:03:50 2008 UTC (9 years, 2 months ago) by demian
ENH: All the bifurcations leading to glyph slice processing now depend on the displayNode inheritance structure and not on the volumeNode

Revision 7225  Directory Listing
Modified Mon Jun 30 22:20:16 2008 UTC (9 years, 2 months ago) by demian
ENH: Decoupling the display of DT volumes from the display for fiber tracts and cleaning unused classes

Revision 7222  Directory Listing
Modified Fri Jun 27 15:53:46 2008 UTC (9 years, 3 months ago) by wjp@bwh.harvard.edu
ENH: fixing look-from to work if the lookat point is not the same as origin

Revision 7220  Directory Listing
Modified Fri Jun 27 14:41:28 2008 UTC (9 years, 3 months ago) by hayes
ENH: Changed to new svn repository

Revision 7219  Directory Listing
Modified Fri Jun 27 14:41:06 2008 UTC (9 years, 3 months ago) by hayes
ENH: Changed to new svn repository

Revision 7212  Directory Listing
Modified Thu Jun 26 23:20:06 2008 UTC (9 years, 3 months ago) by demian
ENH: Branch for simple generalization of previous volume glyphing architecture, which is very diffusion oriented

Revision 7211  Directory Listing
Modified Thu Jun 26 22:10:37 2008 UTC (9 years, 3 months ago) by demian
BUG: Not working housekeeping problem with the nodes

Revision 7210  Directory Listing
Modified Thu Jun 26 22:09:15 2008 UTC (9 years, 3 months ago) by demian
BUG: Not working housekeeping problem with the nodes

Revision 7209  Directory Listing
Modified Thu Jun 26 21:28:37 2008 UTC (9 years, 3 months ago) by demian
ENH: Branch for new volume glyphing architecture

Revision 7208  Directory Listing
Modified Thu Jun 26 19:05:10 2008 UTC (9 years, 3 months ago) by wjp@bwh.harvard.edu
ENH: cleaning up messy comments

Revision 7203  Directory Listing
Modified Thu Jun 26 17:04:17 2008 UTC (9 years, 3 months ago) by wjp@bwh.harvard.edu
ENH: commenting out backface culling on actor3Ds to work around a vtk bug that causes vtkTextActors to not be displayed if backface culling is on.

Revision 7199  Directory Listing
Modified Thu Jun 26 15:19:42 2008 UTC (9 years, 3 months ago) by naucoin
BUG: use the second generation box widget and representation, ported from trunk (copied new files from VTK and reinstated Andy's changes

Revision 7198  Directory Listing
Modified Thu Jun 26 15:14:32 2008 UTC (9 years, 3 months ago) by naucoin
BUG: use the new widget and representation

Revision 7185  Directory Listing
Modified Wed Jun 25 19:44:40 2008 UTC (9 years, 3 months ago) by wjp@bwh.harvard.edu
ENH: fixed QueryAtlas installation to not copy Resource header file

Revision 7184  Directory Listing
Modified Wed Jun 25 19:01:30 2008 UTC (9 years, 3 months ago) by hayes
ENH: Changed to new svn repository

Revision 7174  Directory Listing
Modified Wed Jun 25 14:28:38 2008 UTC (9 years, 3 months ago) by hayes
ENH: Changed tag to new SVN repository

Revision 7170  Directory Listing
Modified Wed Jun 25 13:06:11 2008 UTC (9 years, 3 months ago) by wjp@bwh.harvard.edu
ENH: moving LayoutNode out of the MRML_USE_vtkTeem scope

Revision 7169  Directory Listing
Modified Wed Jun 25 13:05:12 2008 UTC (9 years, 3 months ago) by wjp@bwh.harvard.edu
ENH: updating braininfo logo

Revision 7152  Directory Listing
Modified Tue Jun 24 21:22:01 2008 UTC (9 years, 3 months ago) by clisle
ENH - working through basic meshing workflow (forward only).  Not able to delete items because IDs don't match, so this commit is in advance of alternate implementation of the MRML nodes and the linked list wrapper.

Revision 7148  Directory Listing
Modified Mon Jun 23 21:39:03 2008 UTC (9 years, 3 months ago) by clisle
BUG - using shared access to datastructures now betwen IaFeMesh and slicer.  Removed deep copies and finding that changes to bblock editing works now.  Still getting duplicate entries in MRML for some reason.  

Revision 7141  Directory Listing
Modified Mon Jun 23 03:26:39 2008 UTC (9 years, 3 months ago) by clisle
ENH - Updated and re-added UnstructuredGrid display Module so users can adjust colors and LUTs of UGrid datatypes.  Tested with Meshing Module Successfully.   This required minor changes to the MRMLUnstructuredGrid nodes.

Revision 7140  Directory Listing
Modified Sun Jun 22 23:44:15 2008 UTC (9 years, 3 months ago) by clisle
ENH - updating svn copy of MRML surface list

Revision 7139  Directory Listing
Modified Sun Jun 22 21:34:59 2008 UTC (9 years, 3 months ago) by clisle
ENH - added building block and Meshing data structure support in Slicer.  A simple case works all the way through.  Now debug why multiple bblock and meshes are added and refine UGrid rendering in slicer.

Revision 7135  Directory Listing
Modified Sun Jun 22 00:44:22 2008 UTC (9 years, 3 months ago) by clisle
BUG - fixed bug in MRML scene access.  Now the surfaces loaded in IaFeMesh are placed in the MRML tree as well. 

Revision 7134  Directory Listing
Modified Sat Jun 21 23:27:50 2008 UTC (9 years, 3 months ago) by clisle
ENH - Added separate GUI for the Meshing Module to preserve Univ. of Iowa workflow and GUI design.

Revision 7132  Directory Listing
Modified Fri Jun 20 23:27:04 2008 UTC (9 years, 3 months ago) by wjp@bwh.harvard.edu
ENH: Some code cleanups while working on new annotation bug...

Revision 7122  Directory Listing
Modified Fri Jun 20 19:56:47 2008 UTC (9 years, 3 months ago) by wjp@bwh.harvard.edu
ENH: fixing QueryAtlas problem with Qdec annotations

Revision 7121  Directory Listing
Modified Fri Jun 20 19:56:03 2008 UTC (9 years, 3 months ago) by wjp@bwh.harvard.edu
ENH: trying to fix ugly packing behavior on Linux

Revision 7119  Directory Listing
Modified Fri Jun 20 18:55:38 2008 UTC (9 years, 3 months ago) by naucoin
BUG: in the change to QdecModule becoming a LoadableModule, the viewer widget and interactor style were not getting set. Subclass the SetApplicationGUI method to set these pointers so that plot events can be observed

Revision 7118  Directory Listing
Modified Thu Jun 19 19:11:38 2008 UTC (9 years, 3 months ago) by naucoin
BUG: iwidgets and blt were taken out, reinstating these libraries

Revision 7117  Directory Listing
Modified Thu Jun 19 18:57:55 2008 UTC (9 years, 3 months ago) by naucoin
BUG: was missing the test to check for support libraries

Revision 7112  Directory Listing
Modified Thu Jun 19 16:19:56 2008 UTC (9 years, 3 months ago) by alexy
ENH: don't create copy of raw data when loading scenes with snapshots

Revision 7111  Directory Listing
Modified Thu Jun 19 16:12:19 2008 UTC (9 years, 3 months ago) by alexy
ENH: event optimization fix

Revision 7110  Directory Listing
Modified Thu Jun 19 14:58:08 2008 UTC (9 years, 3 months ago) by naucoin
BUG: port from main branch, was reported to cause crash on scene close

Revision 7109  Directory Listing
Modified Thu Jun 19 14:14:51 2008 UTC (9 years, 3 months ago) by tokuda
BUG: add comment.



Revision 7108  Directory Listing
Modified Thu Jun 19 13:58:51 2008 UTC (9 years, 3 months ago) by wjp@bwh.harvard.edu
ENH: fixed bug in QueryAtlas tear down

Revision 7107  Directory Listing
Modified Thu Jun 19 13:49:59 2008 UTC (9 years, 3 months ago) by clisle
BUG - fixed Mimx notebook display bug.  Created separate window for IaFeMesh interface.  Still using local lists.  Now ready to replace with MRML-backed lists previously tested. 

Revision 7106  Directory Listing
Modified Thu Jun 19 10:45:05 2008 UTC (9 years, 3 months ago) by wjp@bwh.harvard.edu
ENH: more Layout Node checkins...

Revision 7105  Directory Listing
Modified Thu Jun 19 10:44:04 2008 UTC (9 years, 3 months ago) by wjp@bwh.harvard.edu
ENH: adding MRML node for layout (for undo/redo and saving layout with Scene) and disambiguating GUI Layout and GUI Geometry

Revision 7104  Directory Listing
Modified Thu Jun 19 10:39:22 2008 UTC (9 years, 3 months ago) by wjp@bwh.harvard.edu
ENH: fixed QueryAtlas chattiness in the status bar

Revision 7103  Directory Listing
Modified Wed Jun 18 23:36:25 2008 UTC (9 years, 3 months ago) by alexy
BUG: fixed extra volume modifications

Revision 7102  Directory Listing
Modified Wed Jun 18 23:35:27 2008 UTC (9 years, 3 months ago) by alexy
ENH: added scene persistance and snapshots for volume rendering

Revision 7101  Directory Listing
Modified Wed Jun 18 20:34:45 2008 UTC (9 years, 3 months ago) by millerjv
ENH: Merge from trunk 6-13-2008

Revision 7099  Directory Listing
Modified Wed Jun 18 18:28:53 2008 UTC (9 years, 3 months ago) by wjp@bwh.harvard.edu
ENH: fixed debug leaks in scenesnapshots

Revision 7091  Directory Listing
Modified Tue Jun 17 15:42:30 2008 UTC (9 years, 3 months ago) by csmendo
ENH: New branch for improvements in EMSegmenter under Pohl's supervision

Revision 7090  Directory Listing
Modified Tue Jun 17 13:49:20 2008 UTC (9 years, 3 months ago) by wjp@bwh.harvard.edu
ENH: fixing bug in ViewControlGUI packing and rotate-around behavior

Revision 7089  Directory Listing
Modified Tue Jun 17 13:48:15 2008 UTC (9 years, 3 months ago) by wjp@bwh.harvard.edu
ENH: New resources to support ViewControlGUI icon update

Revision 7088  Directory Listing
Modified Tue Jun 17 13:46:59 2008 UTC (9 years, 3 months ago) by wjp@bwh.harvard.edu
ENH: fix for inconsistent packing across platforms and bug in rotate around behavior when scene centroid is not coincident with origin

Revision 7081  Directory Listing
Modified Fri Jun 13 01:21:37 2008 UTC (9 years, 3 months ago) by wangx
BUGBUG: pan is linked only if the slice viewers are in the same orientations in the compareview mode

Revision 7080  Directory Listing
Modified Fri Jun 13 00:17:31 2008 UTC (9 years, 3 months ago) by naucoin
BUG: take the wizard out of a collapsible frame so that can edit in multicolumn list boxes on mac and linux

Revision 7078  Directory Listing
Modified Thu Jun 12 21:06:02 2008 UTC (9 years, 3 months ago) by wangx
BUG: parameters (e.g., zoom, slice) are linked only if the slice viewers are in the same orientations in the compareview mode

Revision 7077  Directory Listing
Modified Thu Jun 12 20:28:48 2008 UTC (9 years, 3 months ago) by naucoin
BUG: porting fixes from trunk for scene close and remove fiducial from list

Revision 7076  Directory Listing
Modified Thu Jun 12 19:33:44 2008 UTC (9 years, 3 months ago) by wangx
BUG: slices are now visible in 3D main viewer based on the current view arrangement, i.e., compareview mode is different from other view mode.
FEA: 3D main viewer is cleared during mode switching between compareview and other view modes

Revision 7075  Directory Listing
Modified Thu Jun 12 18:19:46 2008 UTC (9 years, 3 months ago) by wangx
BUG: fixed the bug that only the first two compareviews are synched during mouse wheel forward/backward 

Revision 7074  Directory Listing
Modified Thu Jun 12 13:37:45 2008 UTC (9 years, 3 months ago) by wangx
BUG: preserve existing FOV when switching views
BUG: parameter linking for compareview vs other views
BUG: view layout when switching in/out of compareview

Revision 7060  Directory Listing
Modified Wed Jun 11 14:13:23 2008 UTC (9 years, 3 months ago) by bensch
ENH: Minor enhanced

Revision 7053  Directory Listing
Modified Tue Jun 10 21:15:29 2008 UTC (9 years, 3 months ago) by naucoin
BUG: take out debugging print out

Revision 7052  Directory Listing
Modified Tue Jun 10 21:13:36 2008 UTC (9 years, 3 months ago) by naucoin
BUG: remove the extra storage node from the scene

Revision 7043  Directory Listing
Modified Tue Jun 10 17:24:37 2008 UTC (9 years, 3 months ago) by alexy
ENH: fixed modify since read is set on volume copy

Revision 7040  Directory Listing
Modified Tue Jun 10 17:16:50 2008 UTC (9 years, 3 months ago) by bensch
ENH: Adaptions, that is the revision we took videos on

Revision 7028  Directory Listing
Modified Mon Jun 9 20:54:51 2008 UTC (9 years, 3 months ago) by pohl
BUG: Removed final bugs in code  -works now 

Revision 7027  Directory Listing
Modified Mon Jun 9 20:54:16 2008 UTC (9 years, 3 months ago) by pohl
BUG: Removed final bugs in code  -works now 

Revision 7026  Directory Listing
Modified Mon Jun 9 20:53:28 2008 UTC (9 years, 3 months ago) by pohl
BUG: Removed final bugs in code  -works now 

Revision 7025  Directory Listing
Modified Mon Jun 9 20:46:32 2008 UTC (9 years, 3 months ago) by pohl
BUG: Removed final bugs in code  -works now 

Revision 7024  Directory Listing
Modified Mon Jun 9 20:43:57 2008 UTC (9 years, 3 months ago) by pohl
BUG: Removed final bugs in code  -works now 

Revision 7023  Directory Listing
Modified Mon Jun 9 16:07:16 2008 UTC (9 years, 3 months ago) by bensch
ENH: Default Values

Revision 7022  Directory Listing
Modified Mon Jun 9 15:18:56 2008 UTC (9 years, 3 months ago) by bensch
BUG: Fixed probe adjustments

Revision 7021  Directory Listing
Modified Mon Jun 9 14:36:10 2008 UTC (9 years, 3 months ago) by bensch
ENH: New Models to render

Revision 7007  Directory Listing
Modified Fri Jun 6 21:40:24 2008 UTC (9 years, 3 months ago) by alexy
BUG-FIXED: reading volume does not case NodeRemove events,  made volume display widgets to update properly on load volume

Revision 7003  Directory Listing
Modified Fri Jun 6 15:50:00 2008 UTC (9 years, 3 months ago) by bensch
ENH: Works with minibirds

Revision 7000  Directory Listing
Modified Fri Jun 6 13:50:55 2008 UTC (9 years, 3 months ago) by bensch
ENH: Ultrasound Streamer GUI better and also the Volume Renderer GUI updated

Revision 6999  Directory Listing
Modified Fri Jun 6 13:07:08 2008 UTC (9 years, 3 months ago) by bensch
ENH: CMakeLists better suited for initial build

Revision 6998  Directory Listing
Modified Thu Jun 5 22:34:20 2008 UTC (9 years, 3 months ago) by bensch
ENH: Runtime check support for CUDA

Revision 6996  Directory Listing
Modified Thu Jun 5 20:51:35 2008 UTC (9 years, 3 months ago) by naucoin
BUG: if change the file name, let that over ride the URI

Revision 6993  Directory Listing
Modified Thu Jun 5 18:21:27 2008 UTC (9 years, 3 months ago) by tokuda
BUG: Changed URL for NAMICSandBox SVN server.


Revision 6992  Directory Listing
Modified Thu Jun 5 17:24:18 2008 UTC (9 years, 3 months ago) by alexy
BUG-FIXED: fixed incorrect node deleting in vtkVolumeRendering.cxx

Revision 6990  Directory Listing
Modified Thu Jun 5 15:20:21 2008 UTC (9 years, 3 months ago) by bensch
ENH: Update

Revision 6989  Directory Listing
Modified Wed Jun 4 22:34:51 2008 UTC (9 years, 3 months ago) by alexy
ENH: VolumeRendering  parameters save restore in the scene

Revision 6985  Directory Listing
Modified Wed Jun 4 21:35:53 2008 UTC (9 years, 3 months ago) by alexy
ENH: VolumeRendering clipping parameters persistance

Revision 6984  Directory Listing
Modified Wed Jun 4 21:18:20 2008 UTC (9 years, 3 months ago) by bensch
ENH: CUDA tag for the distribution

Revision 6983  Directory Listing
Modified Wed Jun 4 21:13:56 2008 UTC (9 years, 3 months ago) by bensch
ENH: ENH: some minor change to enable the CUDA dll's to be installed

Revision 6982  Directory Listing
Modified Wed Jun 4 20:57:10 2008 UTC (9 years, 3 months ago) by bensch
ENH: CMake mess fixed

Revision 6981  Directory Listing
Modified Wed Jun 4 20:44:01 2008 UTC (9 years, 3 months ago) by bensch
ENH: Ultrasound and especially the adjustment setup for the Tool progressed.

Revision 6980  Directory Listing
Modified Wed Jun 4 20:02:58 2008 UTC (9 years, 3 months ago) by pieper
BUG: put in a guard to prevent more than one fiducial per second (protect against key repeats)

Revision 6979  Directory Listing
Modified Wed Jun 4 19:50:13 2008 UTC (9 years, 3 months ago) by bensch
BUG: Compile Issues

Revision 6977  Directory Listing
Modified Wed Jun 4 18:49:52 2008 UTC (9 years, 3 months ago) by pieper
BUG: fix the example helloworld cmakelists file to match Munich2008 slicer and kwwidgets configurations

Revision 6976  Directory Listing
Modified Wed Jun 4 15:03:00 2008 UTC (9 years, 3 months ago) by bensch
ENH: position works as well, now go for scaling

Revision 6975  Directory Listing
Modified Wed Jun 4 14:53:02 2008 UTC (9 years, 3 months ago) by bensch
ENH: Rotation works correctly

Revision 6974  Directory Listing
Modified Wed Jun 4 13:55:15 2008 UTC (9 years, 3 months ago) by pieper
BUG: handle scene snapshot names with spaces in them

Revision 6972  Directory Listing
Modified Tue Jun 3 23:11:32 2008 UTC (9 years, 3 months ago) by pieper
BUG: merge editor bug fixes from trunk into release branch

Revision 6967  Directory Listing
Modified Tue Jun 3 22:26:55 2008 UTC (9 years, 3 months ago) by pieper
BUG: update the orientation label so that any non-aligned slice orientation is specified to be Reformat

Revision 6964  Directory Listing
Modified Tue Jun 3 20:17:56 2008 UTC (9 years, 3 months ago) by clisle
ENH: testing v2 of Meshing integration

Revision 6962  Directory Listing
Modified Tue Jun 3 19:45:49 2008 UTC (9 years, 3 months ago) by naucoin
BUG: EMSegmenter command line module uses the storage node to write out files, which checks for relative file paths, so here we need to take into account a possible shared memory location

Revision 6960  Directory Listing
Modified Mon Jun 2 23:37:51 2008 UTC (9 years, 3 months ago) by davisb
ENH: port bug fixes from svn HEAD
ENH: r6956: ENH: right-click now allows editing of input channel weights; add some tooltip help strings
ENH r6958 and r6959: ENH: enhance warning message for invalid global priors

Revision 6950  Directory Listing
Modified Fri May 30 22:35:17 2008 UTC (9 years, 3 months ago) by pieper
ENH: update version number to 3.2

Revision 6949  Directory Listing
Modified Fri May 30 22:05:47 2008 UTC (9 years, 3 months ago) by pieper
ENH: creating slicer3.2 release branch

Revision 6947  Directory Listing
Modified Fri May 30 21:50:24 2008 UTC (9 years, 3 months ago) by naucoin
BUG: port bug fix from main branch

Revision 6946  Directory Listing
Modified Fri May 30 21:45:02 2008 UTC (9 years, 3 months ago) by naucoin
BUG: two calls to avoid over writing TempURLString in vtkMRMLNode

Revision 6944  Directory Listing
Modified Fri May 30 19:51:29 2008 UTC (9 years, 3 months ago) by bensch
ENH: More work on the transform... painfull

Revision 6942  Directory Listing
Modified Fri May 30 17:45:21 2008 UTC (9 years, 3 months ago) by pieper
COMP: merge from trunk - enable vtk parallel to support IGSTK/OpenIGTLink

Revision 6940  Directory Listing
Modified Fri May 30 17:17:26 2008 UTC (9 years, 3 months ago) by bensch
ENH: Flocks of Minibirds now working.

Revision 6927  Directory Listing
Modified Thu May 29 21:27:53 2008 UTC (9 years, 4 months ago) by pieper
COMP: peg the tutorial at the 3.2 branch of KWWidgets

Revision 6926  Directory Listing
Modified Thu May 29 21:20:23 2008 UTC (9 years, 4 months ago) by bensch
ENH: integration of the ToolGui

Revision 6917  Directory Listing
Modified Thu May 29 17:09:54 2008 UTC (9 years, 4 months ago) by pieper
COMP: switch tag to point to this branch for builds

Revision 6916  Directory Listing
Modified Thu May 29 17:08:46 2008 UTC (9 years, 4 months ago) by pieper
COMP: export the slicer3 build type for use in external modules

Revision 6908  Directory Listing
Modified Thu May 29 01:05:15 2008 UTC (9 years, 4 months ago) by clisle
BUG - debugging update for the Meshing Module. Using the MimxMainUserInterfacePanel instead of the Notebook directly. 

Revision 6896  Directory Listing
Modified Wed May 28 16:26:54 2008 UTC (9 years, 4 months ago) by pieper
ENH: create a stable branch for the Munich training event June 2008

Revision 6837  Directory Listing
Modified Fri May 23 01:14:46 2008 UTC (9 years, 4 months ago) by clisle
BUG - debugging update for the Meshing Module.

Revision 6835  Directory Listing
Modified Thu May 22 22:57:05 2008 UTC (9 years, 4 months ago) by clisle
BUG - debugging update for the Meshing Module. 

Revision 6822  Directory Listing
Modified Thu May 22 17:24:49 2008 UTC (9 years, 4 months ago) by bensch
ENH: Added new Classes. THIS WILL NOT COMPILE ANYMORE

Revision 6759  Directory Listing
Modified Mon May 19 03:29:11 2008 UTC (9 years, 4 months ago) by bess
STYLE: remove some debugging code.  Clean up some comments

Revision 6758  Directory Listing
Modified Mon May 19 02:26:43 2008 UTC (9 years, 4 months ago) by bess
ENH: implement LPS->RAS conversion for bsplines

Revision 6757  Directory Listing
Modified Mon May 19 02:12:47 2008 UTC (9 years, 4 months ago) by bess
STYLE: remove debugging output

Revision 6754  Directory Listing
Modified Sun May 18 03:38:35 2008 UTC (9 years, 4 months ago) by bess
ENH: Merge 6751:6753 from trunk into bspline branch

Revision 6752  Directory Listing
Modified Sat May 17 19:08:11 2008 UTC (9 years, 4 months ago) by bess
ENH: Merge 6686:6751 from trunk into bspline branch

Revision 6750  Directory Listing
Modified Sat May 17 15:37:37 2008 UTC (9 years, 4 months ago) by hliu
BUG: in the destructor, a wrong variable was used.

Revision 6749  Directory Listing
Modified Sat May 17 15:07:45 2008 UTC (9 years, 4 months ago) by hliu
ENH: modified due to KWWidgets changes.

Revision 6748  Directory Listing
Modified Sat May 17 14:55:56 2008 UTC (9 years, 4 months ago) by hliu
ENH: updated from Slicer 3 trunk.

Revision 6747  Directory Listing
Modified Sat May 17 14:54:00 2008 UTC (9 years, 4 months ago) by hliu
ENH: modified due to KWWidgets changes.

Revision 6740  Directory Listing
Modified Fri May 16 16:54:11 2008 UTC (9 years, 4 months ago) by clisle
ENH - adding 2nd version of Univ. of Iowa Meshing Module to Slicer.  Added meshing module to Slicer3.cxx and modified cmake files to include the correct libraries during build and link.

Revision 6739  Directory Listing
Modified Fri May 16 16:44:49 2008 UTC (9 years, 4 months ago) by clisle
BUG - Replacing upload. The previous version was broken.

Revision 6738  Directory Listing
Modified Fri May 16 16:32:16 2008 UTC (9 years, 4 months ago) by clisle
ENH - adding 2nd version of Univ. of Iowa Meshing Module to Slicer.  Added meshing module to Slicer3.cxx and modified cmake files to include the correct libraries during build and link.

Revision 6737  Directory Listing
Modified Fri May 16 15:05:55 2008 UTC (9 years, 4 months ago) by clisle
BUG - Replacing upload. The previous version was broken.

Revision 6736  Directory Listing
Modified Fri May 16 14:55:32 2008 UTC (9 years, 4 months ago) by clisle
BUG - Replacing upload. The previous version was broken.

Revision 6735  Directory Listing
Modified Fri May 16 14:45:41 2008 UTC (9 years, 4 months ago) by clisle
BUG - Replacing upload. The previous version was broken.

Revision 6734  Directory Listing
Modified Fri May 16 14:40:08 2008 UTC (9 years, 4 months ago) by clisle
BUG - Replacing upload. The previous version was broken.

Revision 6733  Directory Listing
Modified Fri May 16 14:23:26 2008 UTC (9 years, 4 months ago) by clisle
BUG - Replacing upload. The previous version was broken.

Revision 6731  Directory Listing
Modified Thu May 15 20:45:02 2008 UTC (9 years, 4 months ago) by clisle
BUG - Replacing CMakeLists.txt in Meshing subdirectories because they were accidentally erased

Revision 6729  Directory Listing
Modified Thu May 15 18:27:15 2008 UTC (9 years, 4 months ago) by clisle
ENH - adding 2nd version of Univ. of Iowa Meshing Module to Slicer.  Added meshing module to Slicer3.cxx and modified cmake files to include the correct libraries during build and link. 

Revision 6728  Directory Listing
Modified Thu May 15 18:25:48 2008 UTC (9 years, 4 months ago) by clisle
ENH - adding 2nd version of Univ. of Iowa Meshing Module to Slicer.  This is an ongoing integration effort.  This version is the first commit of the new codebase, which only supports the initial GUI and loads a surface file into local lists.  Doing the commit one library at a time to work out the text problems (spaces, tabs, dos-newlines, etc.).

Revision 6727  Directory Listing
Modified Thu May 15 18:25:12 2008 UTC (9 years, 4 months ago) by clisle
ENH - adding 2nd version of Univ. of Iowa Meshing Module to Slicer.  This is an ongoing integration effort.  This version is the first commit of the new codebase, which only supports the initial GUI and loads a surface file into local lists.  Doing the commit one library at a time to work out the text problems (spaces, tabs, dos-newlines, etc.).

Revision 6726  Directory Listing
Modified Thu May 15 18:24:37 2008 UTC (9 years, 4 months ago) by clisle
ENH - adding 2nd version of Univ. of Iowa Meshing Module to Slicer.  This is an ongoing integration effort.  This version is the first commit of the new codebase, which only supports the initial GUI and loads a surface file into local lists.  Doing the commit one library at a time to work out the text problems (spaces, tabs, dos-newlines, etc.).

Revision 6725  Directory Listing
Modified Thu May 15 18:22:17 2008 UTC (9 years, 4 months ago) by clisle
ENH - adding 2nd version of Univ. of Iowa Meshing Module to Slicer.  This is an ongoing integration effort.  This version is the first commit of the new codebase, which only supports the initial GUI and loads a surface file into local lists.  Doing the commit one library at a time to work out the text problems (spaces, tabs, dos-newlines, etc.).

Revision 6724  Directory Listing
Modified Thu May 15 18:21:47 2008 UTC (9 years, 4 months ago) by clisle
ENH - adding 2nd version of Univ. of Iowa Meshing Module to Slicer.  This is an ongoing integration effort.  This version is the first commit of the new codebase, which only supports the initial GUI and loads a surface file into local lists.  Doing the commit one library at a time to work out the text problems (spaces, tabs, dos-newlines, etc.).

Revision 6723  Directory Listing
Modified Thu May 15 18:20:12 2008 UTC (9 years, 4 months ago) by clisle
ENH - adding 2nd version of Univ. of Iowa Meshing Module to Slicer.  This is an ongoing integration effort.  This version is the first commit of the new codebase, which only supports the initial GUI and loads a surface file into local lists.  Doing the commit one library at a time to work out the text problems (spaces, tabs, dos-newlines, etc.).

Revision 6722  Directory Listing
Modified Thu May 15 18:16:58 2008 UTC (9 years, 4 months ago) by clisle
ENH - adding 2nd version of Univ. of Iowa Meshing Module to Slicer.  This is an ongoing integration effort.  This version is the first commit of the new codebase, which only supports the initial GUI and loads a surface file into local lists.  Doing the commit one library at a time to work out the text problems (spaces, tabs, dos-newlines, etc.).

Revision 6721  Directory Listing
Modified Thu May 15 17:27:32 2008 UTC (9 years, 4 months ago) by clisle
ENH - adding 2nd version of Univ. of Iowa Meshing Module to Slicer.  This is an ongoing integration effort.  This version is the first commit of the new codebase, which only supports the initial GUI and loads a surface file into local lists.

Revision 6700  Directory Listing
Modified Tue May 13 19:01:56 2008 UTC (9 years, 4 months ago) by clisle
ENH:  second revision of Univ. of Iowa FE Mesh module development

Revision 6689  Directory Listing
Modified Mon May 12 01:57:26 2008 UTC (9 years, 4 months ago) by bess
ENH: change assert to errors+return. Add documentation. Remove debug log messages

Revision 6688  Directory Listing
Modified Mon May 12 01:07:39 2008 UTC (9 years, 4 months ago) by bess
ENH: forgot to add the mrml nodes

Revision 6687  Directory Listing
Modified Mon May 12 01:06:12 2008 UTC (9 years, 4 months ago) by bess
ENH: Update to trunk 6686

Revision 6686  Directory Listing
Modified Sun May 11 23:52:04 2008 UTC (9 years, 4 months ago) by bess
ENH: bsplines are basically working. Committing before merging in updates to trunk

Revision 6634  Directory Listing
Modified Wed May 7 17:53:11 2008 UTC (9 years, 4 months ago) by pieper
COMP: update svn url for switch

Revision 6633  Directory Listing
Modified Wed May 7 17:51:39 2008 UTC (9 years, 4 months ago) by pieper
COMP: deltas for tcl85

Revision 6632  Directory Listing
Modified Wed May 7 17:46:10 2008 UTC (9 years, 4 months ago) by pieper
COMP: test for tcl/tk8.5

Revision 6629  Directory Listing
Modified Wed May 7 15:09:37 2008 UTC (9 years, 4 months ago) by pieper
COMP: different testfile for mac

Revision 6628  Directory Listing
Modified Wed May 7 14:55:52 2008 UTC (9 years, 4 months ago) by pieper
COMP: linux test file for itcl

Revision 6627  Directory Listing
Modified Wed May 7 14:50:36 2008 UTC (9 years, 4 months ago) by pieper
COMP: fix itcl test file for all platforms

Revision 6626  Directory Listing
Modified Wed May 7 14:40:51 2008 UTC (9 years, 4 months ago) by pieper
COMP: fix for mac itcl version change

Revision 6625  Directory Listing
Modified Wed May 7 14:29:15 2008 UTC (9 years, 4 months ago) by pieper
COMP: rollback to tcl8.4

Revision 6623  Directory Listing
Modified Tue May 6 18:02:08 2008 UTC (9 years, 4 months ago) by pieper
COMP: remove iwidgets from standard libraries

Revision 6622  Directory Listing
Modified Tue May 6 18:01:39 2008 UTC (9 years, 4 months ago) by pieper
COMP: point to correct itcl lib

Revision 6617  Directory Listing
Modified Mon May 5 20:24:13 2008 UTC (9 years, 4 months ago) by pieper
ENH: turn off COCOA by default

Revision 6616  Directory Listing
Modified Mon May 5 19:50:41 2008 UTC (9 years, 4 months ago) by pieper
COMP: update for itcl 3.4

Revision 6615  Directory Listing
Modified Mon May 5 19:50:18 2008 UTC (9 years, 4 months ago) by pieper
COMP: updates for tcl8.5

Revision 6614  Directory Listing
Modified Mon May 5 18:43:17 2008 UTC (9 years, 4 months ago) by pieper
COMP: update for new tcl/tk version

Revision 6613  Directory Listing
Modified Mon May 5 18:42:59 2008 UTC (9 years, 4 months ago) by pieper
COMP: update for new tcl/tk version

Revision 6612  Directory Listing
Modified Mon May 5 18:42:03 2008 UTC (9 years, 4 months ago) by pieper
COMP: remove unneeded variables for 64 bit linux build

Revision 6611  Directory Listing
Modified Mon May 5 18:38:38 2008 UTC (9 years, 4 months ago) by pieper
COMP: restore missing cmake tag

Revision 6610  Directory Listing
Modified Mon May 5 18:30:07 2008 UTC (9 years, 4 months ago) by pieper
COMP: fix path to svn repo

Revision 6607  Directory Listing
Modified Mon May 5 17:27:02 2008 UTC (9 years, 4 months ago) by pieper
COMP: use testing branch for switch for now

Revision 6606  Directory Listing
Modified Mon May 5 17:24:26 2008 UTC (9 years, 4 months ago) by pieper
COMP: build process for tcltk 8.5 and other updates

Revision 6605  Directory Listing
Modified Mon May 5 17:16:42 2008 UTC (9 years, 4 months ago) by pieper
COMP: new branch to test vtk5.2, CMake 2.6, tcl/tk 8.5, ITK 3.6 for slicer3.2

Revision 6601  Directory Listing
Modified Mon May 5 15:37:28 2008 UTC (9 years, 4 months ago) by pohl
BUG: Saving intermediate results caused crashes - added catch 

Revision 6600  Directory Listing
Modified Mon May 5 03:02:55 2008 UTC (9 years, 4 months ago) by bess
ENH: branch to work on properly importing ITK BSplines.

Revision 6549  Directory Listing
Modified Fri Apr 25 18:17:19 2008 UTC (9 years, 5 months ago) by davisb
ENH: ported r6548 from trunk

Revision 6509  Directory Listing
Modified Fri Apr 18 18:26:10 2008 UTC (9 years, 5 months ago) by bensch
ENH: Added support for a tool overlay

Revision 6499  Directory Listing
Modified Thu Apr 17 23:06:58 2008 UTC (9 years, 5 months ago) by bensch
ENH: Better but not perfect ZBuffer-value

Revision 6489  Directory Listing
Modified Wed Apr 16 17:04:15 2008 UTC (9 years, 5 months ago) by bensch
ENH: Tried to fix the Z-Buffer... no real success

Revision 6486  Directory Listing
Modified Tue Apr 15 23:10:09 2008 UTC (9 years, 5 months ago) by bensch
ENH: Compile Issue

Revision 6483  Directory Listing
Modified Tue Apr 15 22:43:09 2008 UTC (9 years, 5 months ago) by bensch
ENH: Stepping is correct now

Revision 6479  Directory Listing
Modified Tue Apr 15 15:05:37 2008 UTC (9 years, 5 months ago) by davisb
ENH: merge trunk changes r6397:6478 into branch

Revision 6477  Directory Listing
Modified Tue Apr 15 14:48:54 2008 UTC (9 years, 5 months ago) by bensch
ENH: FINALLY, The Projections are correct

Revision 6475  Directory Listing
Modified Mon Apr 14 22:48:07 2008 UTC (9 years, 5 months ago) by bensch
ENH: Does not what I want... still... mathematics cheat on me today

Revision 6472  Directory Listing
Modified Mon Apr 14 19:10:28 2008 UTC (9 years, 5 months ago) by bensch
ENH: Trying to get a better Projection Matrix, currently out of place

Revision 6469  Directory Listing
Modified Sat Apr 12 19:10:39 2008 UTC (9 years, 5 months ago) by tgl
ENH adding loadable module description files, calling GENERATELM macros.  Updated GenerateLM to read from TXT files.  Changed Slice3_main so that only loadable modules will be active.  Changes to Module GUI and Logic as necessary

Revision 6465  Directory Listing
Modified Fri Apr 11 21:31:32 2008 UTC (9 years, 5 months ago) by bensch
BUG: Fixed some runtime issues, that kept the Input from being acceptable to the Volume Renderer

Revision 6464  Directory Listing
Modified Fri Apr 11 21:03:44 2008 UTC (9 years, 5 months ago) by bensch
ENH: NEw Command... still crashing

Revision 6461  Directory Listing
Modified Fri Apr 11 19:28:46 2008 UTC (9 years, 5 months ago) by bensch
ENH: Implemented Reconnect()

Revision 6460  Directory Listing
Modified Fri Apr 11 17:13:27 2008 UTC (9 years, 5 months ago) by bensch
ENH: Works

Revision 6459  Directory Listing
Modified Fri Apr 11 16:42:08 2008 UTC (9 years, 5 months ago) by bensch
ENH: Example compiles and links again with the correct module

Revision 6458  Directory Listing
Modified Fri Apr 11 16:38:39 2008 UTC (9 years, 5 months ago) by bensch
ENH: Event Handling

Revision 6457  Directory Listing
Modified Fri Apr 11 16:14:42 2008 UTC (9 years, 5 months ago) by bensch
ENH: Bugfix compiler issue

Revision 6456  Directory Listing
Modified Fri Apr 11 16:13:22 2008 UTC (9 years, 5 months ago) by bensch
ENH: Compiles again

Revision 6455  Directory Listing
Modified Fri Apr 11 16:07:13 2008 UTC (9 years, 5 months ago) by bensch
ENH: Compiles again after a lot of changes

Revision 6454  Directory Listing
Modified Fri Apr 11 14:45:25 2008 UTC (9 years, 5 months ago) by bensch
ENH: Moved Ultrasound Module GUI Example to the ultrasound examples directory

Revision 6453  Directory Listing
Modified Fri Apr 11 14:29:46 2008 UTC (9 years, 5 months ago) by bensch
ENH: Better tests for the Ultrasound Stuff

Revision 6451  Directory Listing
Modified Fri Apr 11 14:08:15 2008 UTC (9 years, 5 months ago) by bensch
ENH: Added Paul's changes to the vtkPhillipsUltrasoundStream

Revision 6449  Directory Listing
Modified Fri Apr 11 13:53:46 2008 UTC (9 years, 5 months ago) by bensch
ENH: Compiler Enhancement

Revision 6448  Directory Listing
Modified Fri Apr 11 13:52:57 2008 UTC (9 years, 5 months ago) by bensch
ENH: Minor Changes

Revision 6430  Directory Listing
Modified Tue Apr 8 02:17:34 2008 UTC (9 years, 5 months ago) by davisb
ENH: creating private branch for EMSeg registration

Revision 6429  Directory Listing
Modified Mon Apr 7 23:31:53 2008 UTC (9 years, 5 months ago) by tokuda
STYLE: change some debug outputs.

Revision 6410  Directory Listing
Modified Sun Apr 6 03:15:49 2008 UTC (9 years, 5 months ago) by tokuda
COMP: compile on Mac OS X

Revision 6407  Directory Listing
Modified Sat Apr 5 04:44:26 2008 UTC (9 years, 5 months ago) by tokuda
ENH: Type definitions for igtl and 64-bit CRC.

Revision 6406  Directory Listing
Modified Fri Apr 4 21:29:14 2008 UTC (9 years, 5 months ago) by tokuda
STYLE: Indent changed to VTK style

Revision 6405  Directory Listing
Modified Fri Apr 4 21:28:03 2008 UTC (9 years, 5 months ago) by tokuda
STYLE: Indent changed to VTK style

Revision 6403  Directory Listing
Modified Fri Apr 4 19:28:46 2008 UTC (9 years, 5 months ago) by bensch
ENH: Compile but no link. 2 function still missing (Invers and Pseudo_Invers of Matrix)

Revision 6402  Directory Listing
Modified Fri Apr 4 19:16:31 2008 UTC (9 years, 5 months ago) by pieper
ENH: updat to the current trunk

Revision 6398  Directory Listing
Modified Fri Apr 4 15:05:51 2008 UTC (9 years, 5 months ago) by bensch
ENH: Base

Revision 6389  Directory Listing
Modified Thu Apr 3 20:09:02 2008 UTC (9 years, 5 months ago) by bensch
ENH: Better module

Revision 6386  Directory Listing
Modified Thu Apr 3 16:25:26 2008 UTC (9 years, 5 months ago) by bensch
ENH: JUNICHI Superstar, thanks for the help, now it works

Revision 6379  Directory Listing
Modified Wed Apr 2 21:36:01 2008 UTC (9 years, 5 months ago) by pohl
ENH: Updated to current trunc with revision -r5392:6371

Revision 6376  Directory Listing
Modified Wed Apr 2 20:04:39 2008 UTC (9 years, 5 months ago) by pohl
ENH: Added for debugging if test fails

Revision 6374  Directory Listing
Modified Wed Apr 2 19:54:21 2008 UTC (9 years, 5 months ago) by pohl
ENH: Added for debugging if test fails

Revision 6373  Directory Listing
Modified Wed Apr 2 18:30:34 2008 UTC (9 years, 5 months ago) by bensch
ENH: Enhanced Multithreaded Reading of Data

Revision 6372  Directory Listing
Modified Wed Apr 2 17:54:06 2008 UTC (9 years, 5 months ago) by pieper
COMP: bring up to current trunk (6371)

Revision 6368  Directory Listing
Modified Wed Apr 2 16:55:06 2008 UTC (9 years, 5 months ago) by pohl
ENH: Simulation for Tumor Growth

Revision 6367  Directory Listing
Modified Wed Apr 2 16:53:10 2008 UTC (9 years, 5 months ago) by pohl
BUG: parameters for MRML file are now correctly propagated to the GUI

Revision 6366  Directory Listing
Modified Wed Apr 2 16:32:55 2008 UTC (9 years, 5 months ago) by bensch
ENH: Compiler issue fixed with the CUDA Volume Rendering Module inclusion

Revision 6365  Directory Listing
Modified Wed Apr 2 16:31:04 2008 UTC (9 years, 5 months ago) by bensch
ENH: Added new Files ScannerReader

Revision 6364  Directory Listing
Modified Wed Apr 2 16:30:36 2008 UTC (9 years, 5 months ago) by pohl
ENH: Made Testing of command line tool work

Revision 6363  Directory Listing
Modified Wed Apr 2 16:30:26 2008 UTC (9 years, 5 months ago) by pohl
ENH: Made Testing of command line tool work

Revision 6362  Directory Listing
Modified Wed Apr 2 16:29:58 2008 UTC (9 years, 5 months ago) by bensch
ENH: Missing Directive fixed

Revision 6361  Directory Listing
Modified Wed Apr 2 16:29:54 2008 UTC (9 years, 5 months ago) by pohl
ENH: Made Testing of command line tool work

Revision 6360  Directory Listing
Modified Wed Apr 2 16:22:02 2008 UTC (9 years, 5 months ago) by pohl
ENH: Testing file is now complete

Revision 6359  Directory Listing
Modified Wed Apr 2 14:01:03 2008 UTC (9 years, 5 months ago) by pohl
ENH: New Testing functionality

Revision 6358  Directory Listing
Modified Wed Apr 2 00:11:09 2008 UTC (9 years, 5 months ago) by pohl
BUG: Snapshot now works again

Revision 6356  Directory Listing
Modified Tue Apr 1 22:09:53 2008 UTC (9 years, 5 months ago) by pieper
ENH: switch to sync mode for easier transition into the trunk

Revision 6355  Directory Listing
Modified Tue Apr 1 21:13:05 2008 UTC (9 years, 5 months ago) by pieper
ENH: merge changes from trunk -r6350:6354 (next time merge from 6355)

Revision 6354  Directory Listing
Modified Tue Apr 1 20:45:22 2008 UTC (9 years, 5 months ago) by pieper
COMP: changes from trunk

Revision 6352  Directory Listing
Modified Tue Apr 1 20:16:04 2008 UTC (9 years, 5 months ago) by bensch
BUG: Fixed multiple compile issues

Revision 6351  Directory Listing
Modified Tue Apr 1 20:07:46 2008 UTC (9 years, 5 months ago) by bensch
ENH: Added missing files

Revision 6349  Directory Listing
Modified Tue Apr 1 19:36:58 2008 UTC (9 years, 5 months ago) by pieper
ENH: merge updates from trunk

Revision 6347  Directory Listing
Modified Tue Apr 1 19:10:11 2008 UTC (9 years, 5 months ago) by pieper
ENH: update event broker branch to current trunk

Revision 6346  Directory Listing
Modified Tue Apr 1 17:43:32 2008 UTC (9 years, 5 months ago) by millerjv
ENH: Use factoryless versions of TransformIO

Revision 6341  Directory Listing
Modified Tue Apr 1 16:31:15 2008 UTC (9 years, 5 months ago) by bensch
ENH: Sync

Revision 6339  Directory Listing
Modified Mon Mar 31 21:32:27 2008 UTC (9 years, 5 months ago) by bensch
ENH: Slider

Revision 6335  Directory Listing
Modified Mon Mar 31 21:12:35 2008 UTC (9 years, 5 months ago) by bensch
ENH: Added Ultrasound module

Revision 6334  Directory Listing
Modified Mon Mar 31 20:27:29 2008 UTC (9 years, 5 months ago) by bensch
BUG: Compile Issue

Revision 6333  Directory Listing
Modified Mon Mar 31 19:39:54 2008 UTC (9 years, 5 months ago) by bensch
ENH: Added new Ultrasound Module

Revision 6331  Directory Listing
Modified Mon Mar 31 19:32:39 2008 UTC (9 years, 5 months ago) by bensch
ENH: Compile issue

Revision 6330  Directory Listing
Modified Mon Mar 31 19:09:03 2008 UTC (9 years, 5 months ago) by bensch
ENH: Rename

Revision 6327  Directory Listing
Modified Mon Mar 31 02:23:05 2008 UTC (9 years, 5 months ago) by tokuda
BUG: Fixed the problem that vtkOpenIGTLinkGUI::ProcessGUIEvent() was called twice after the Activate check button was pressed.

Revision 6325  Directory Listing
Modified Mon Mar 31 01:46:03 2008 UTC (9 years, 5 months ago) by tokuda
BUG: Segmentation fault in Linux: Removed ConnectionStatusButtonSet.

Revision 6323  Directory Listing
Modified Sun Mar 30 18:49:21 2008 UTC (9 years, 5 months ago) by tgl
ENH add inteface to void Init(), so loadable modules can call for every module

Revision 6316  Directory Listing
Modified Fri Mar 28 13:37:39 2008 UTC (9 years, 6 months ago) by bensch
BUG: Delete of wrong element in OpenIGTLinkGUI

Revision 6315  Directory Listing
Modified Fri Mar 28 13:37:05 2008 UTC (9 years, 6 months ago) by bensch
ENH: Removed unused variable

Revision 6314  Directory Listing
Modified Fri Mar 28 07:35:30 2008 UTC (9 years, 6 months ago) by nicky
ENH:omited ntkFiltering classes (not needed by RegistrationCuda module)

Revision 6313  Directory Listing
Modified Thu Mar 27 22:03:18 2008 UTC (9 years, 6 months ago) by bensch
ENH: Rendering With ZBuffer works correctly

Revision 6309  Directory Listing
Modified Thu Mar 27 15:43:04 2008 UTC (9 years, 6 months ago) by clisle
BUG - adding BBlock editing operations to Meshing workflow;  fixing bugs with editing operations

Revision 6308  Directory Listing
Modified Thu Mar 27 14:31:43 2008 UTC (9 years, 6 months ago) by bensch
ENH: Nicer Split of the interface

Revision 6307  Directory Listing
Modified Wed Mar 26 23:41:26 2008 UTC (9 years, 6 months ago) by bensch
ENH: More Template Argumentation Handling. Easier to call functions

Revision 6306  Directory Listing
Modified Wed Mar 26 23:11:22 2008 UTC (9 years, 6 months ago) by bensch
ENH: Templated code

Revision 6302  Directory Listing
Modified Wed Mar 26 20:41:11 2008 UTC (9 years, 6 months ago) by tokuda
BUG: Fixed slicer_variables.tcl to be used for IGT branch.

Revision 6301  Directory Listing
Modified Wed Mar 26 19:52:22 2008 UTC (9 years, 6 months ago) by hliu
STYLE: Renamed Slicer3 IGT2 branch by Slicer3 IGT branch.

Revision 6300  Directory Listing
Modified Wed Mar 26 19:49:04 2008 UTC (9 years, 6 months ago) by hliu
STYLE: Renamed Slicer3 IGT branch by Slicer3 IGT-old branch.

Revision 6298  Directory Listing
Modified Wed Mar 26 18:12:51 2008 UTC (9 years, 6 months ago) by bensch
ENH: correcting ZBuffer.

Revision 6297  Directory Listing
Modified Wed Mar 26 17:37:31 2008 UTC (9 years, 6 months ago) by bensch
ENH: Removed unused vars

Revision 6296  Directory Listing
Modified Wed Mar 26 17:34:18 2008 UTC (9 years, 6 months ago) by bensch
ENH: Omitting useless Loop. Now we are a lot faster

Revision 6295  Directory Listing
Modified Wed Mar 26 15:32:28 2008 UTC (9 years, 6 months ago) by bensch
ENH: float3

Revision 6294  Directory Listing
Modified Wed Mar 26 15:09:40 2008 UTC (9 years, 6 months ago) by bensch
ENH: Animation

Revision 6293  Directory Listing
Modified Wed Mar 26 14:32:52 2008 UTC (9 years, 6 months ago) by bensch
ENH: Some more implementation, less compile errors

Revision 6292  Directory Listing
Modified Wed Mar 26 13:42:34 2008 UTC (9 years, 6 months ago) by bensch
ENH: Minor fixes, and added Matrix class...

Revision 6291  Directory Listing
Modified Wed Mar 26 13:18:55 2008 UTC (9 years, 6 months ago) by bensch
ENH: No more compile issues on Windows, thou lots of Linker bugs

Revision 6290  Directory Listing
Modified Wed Mar 26 12:59:40 2008 UTC (9 years, 6 months ago) by bensch
ENH: Removed pthread and SAP. by Nicolas

Revision 6289  Directory Listing
Modified Wed Mar 26 12:51:44 2008 UTC (9 years, 6 months ago) by bensch
ENH: OpenIGT compiles and runs on Linux

Revision 6288  Directory Listing
Modified Wed Mar 26 00:26:46 2008 UTC (9 years, 6 months ago) by tgl
ENH build QueryAtlas with loadable module support

Revision 6287  Directory Listing
Modified Wed Mar 26 00:25:56 2008 UTC (9 years, 6 months ago) by tgl
ENH modified GenerateCLP to create GenerateLM, a tool for making header and source files that enable run-time loading of the module

Revision 6286  Directory Listing
Modified Tue Mar 25 22:27:29 2008 UTC (9 years, 6 months ago) by bensch
ENH: Copy Module over

Revision 6285  Directory Listing
Modified Tue Mar 25 21:50:08 2008 UTC (9 years, 6 months ago) by bensch
ENH: sync

Revision 6284  Directory Listing
Modified Tue Mar 25 21:40:51 2008 UTC (9 years, 6 months ago) by bensch
ENH: Add as a lib

Revision 6283  Directory Listing
Modified Tue Mar 25 20:20:40 2008 UTC (9 years, 6 months ago) by bensch
BUG: Compiles again on Linux

Revision 6279  Directory Listing
Modified Mon Mar 24 18:28:22 2008 UTC (9 years, 6 months ago) by wjp@bwh.harvard.edu
ENH: added icon for CompareView, image data, resource, icon, and added into chooselayout menubutton

Revision 6278  Directory Listing
Modified Mon Mar 24 18:26:35 2008 UTC (9 years, 6 months ago) by bensch
ENH: not running

Revision 6276  Directory Listing
Modified Mon Mar 24 17:57:45 2008 UTC (9 years, 6 months ago) by bensch
ENH: Externalized important stuff into a new Class

Revision 6274  Directory Listing
Modified Mon Mar 24 16:01:46 2008 UTC (9 years, 6 months ago) by bensch
ENH: Added new files

Revision 6273  Directory Listing
Modified Mon Mar 24 15:41:09 2008 UTC (9 years, 6 months ago) by bensch
ENH: Registration off by default

Revision 6272  Directory Listing
Modified Mon Mar 24 15:40:00 2008 UTC (9 years, 6 months ago) by bensch
ENH: Ultrasound Example for Paul

Revision 6271  Directory Listing
Modified Mon Mar 24 15:32:04 2008 UTC (9 years, 6 months ago) by pohl
ENH: Simultation runs now - however input is the same as output

Revision 6269  Directory Listing
Modified Sun Mar 23 04:25:23 2008 UTC (9 years, 6 months ago) by tokuda
BUG: Image transfer in OpenIGTLink.

Revision 6268  Directory Listing
Modified Sat Mar 22 05:01:27 2008 UTC (9 years, 6 months ago) by tokuda
ENH: OpenIGTLink module: Circular buffer monitoring.

Revision 6267  Directory Listing
Modified Sat Mar 22 00:01:52 2008 UTC (9 years, 6 months ago) by tokuda
ENH: Circular buffer class has been added.



Revision 6266  Directory Listing
Modified Fri Mar 21 19:35:37 2008 UTC (9 years, 6 months ago) by bensch
ENH: minor

Revision 6263  Directory Listing
Modified Fri Mar 21 17:51:27 2008 UTC (9 years, 6 months ago) by pohl
ENH: Finalized Deformable Registration

Revision 6260  Directory Listing
Modified Thu Mar 20 22:09:55 2008 UTC (9 years, 6 months ago) by tokuda
ENH: OpenIGTLink connector management.

Revision 6259  Directory Listing
Modified Thu Mar 20 21:09:31 2008 UTC (9 years, 6 months ago) by wangx
ENH: added a menu option in layout button to select the number of compare slice viewers

Revision 6258  Directory Listing
Modified Thu Mar 20 20:39:38 2008 UTC (9 years, 6 months ago) by bensch
ENH: some more

Revision 6257  Directory Listing
Modified Thu Mar 20 17:31:04 2008 UTC (9 years, 6 months ago) by pohl
ENH: Added 3D view of gorwth

Revision 6256  Directory Listing
Modified Thu Mar 20 14:34:21 2008 UTC (9 years, 6 months ago) by bensch
ENH: better test app

Revision 6255  Directory Listing
Modified Wed Mar 19 23:24:04 2008 UTC (9 years, 6 months ago) by tokuda
ENH: OpenIGTLink connector list has been implemented (initial version).

Revision 6254  Directory Listing
Modified Wed Mar 19 21:32:13 2008 UTC (9 years, 6 months ago) by bensch
ENH: Ready to take usefull measurements

Revision 6253  Directory Listing
Modified Wed Mar 19 21:06:40 2008 UTC (9 years, 6 months ago) by bensch
ENH: Clip-ratio works

Revision 6252  Directory Listing
Modified Wed Mar 19 20:49:45 2008 UTC (9 years, 6 months ago) by bensch
ENH: Clipper integrated

Revision 6251  Directory Listing
Modified Wed Mar 19 20:41:46 2008 UTC (9 years, 6 months ago) by tokuda
ENH: Added OpenIGTLink Module (with GUI).

Revision 6250  Directory Listing
Modified Wed Mar 19 20:28:15 2008 UTC (9 years, 6 months ago) by bensch
ENH: Animation back in again

Revision 6249  Directory Listing
Modified Wed Mar 19 19:14:26 2008 UTC (9 years, 6 months ago) by bensch
ENH: Demo fixes

Revision 6243  Directory Listing
Modified Tue Mar 18 21:24:04 2008 UTC (9 years, 6 months ago) by millerjv
ENH: Compare viewers are constructed to be orange

Revision 6242  Directory Listing
Modified Tue Mar 18 21:13:45 2008 UTC (9 years, 6 months ago) by millerjv
ENH: Linking of zoom, pan, slice offiset, oblique reformat

Revision 6230  Directory Listing
Modified Tue Mar 18 05:18:44 2008 UTC (9 years, 6 months ago) by pohl
ENH: Add 3D rendering of analysis results

Revision 6226  Directory Listing
Modified Mon Mar 17 17:28:48 2008 UTC (9 years, 6 months ago) by millerjv
BUG: fixed crash on startup
ENH: first checkin of linked controls for view compare capabilities.

Revision 6216  Directory Listing
Modified Fri Mar 14 20:15:22 2008 UTC (9 years, 6 months ago) by millerjv
ENH: work in progress


Revision 6212  Directory Listing
Modified Fri Mar 14 19:43:16 2008 UTC (9 years, 6 months ago) by millerjv
ENH: branch for compare viewer development

Revision 6196  Directory Listing
Modified Thu Mar 13 20:38:49 2008 UTC (9 years, 6 months ago) by clisle
BUG - commit so steve can build

Revision 6193  Directory Listing
Modified Thu Mar 13 18:35:32 2008 UTC (9 years, 6 months ago) by pieper
ENH: switch to sync event mode when loading scenes

Revision 6192  Directory Listing
Modified Thu Mar 13 17:57:37 2008 UTC (9 years, 6 months ago) by clisle
ENH - modified to include UnstructuredGrids module

Revision 6191  Directory Listing
Modified Thu Mar 13 17:56:35 2008 UTC (9 years, 6 months ago) by clisle
ENH - add linkage for unstructuredGrids module

Revision 6190  Directory Listing
Modified Thu Mar 13 17:02:18 2008 UTC (9 years, 6 months ago) by clisle
BUG - fixed dependency between UGrid and UGridDisplay nodes; needed by UnstructuredGrids module

Revision 6189  Directory Listing
Modified Thu Mar 13 16:57:49 2008 UTC (9 years, 6 months ago) by clisle
BUG- removed dependencies between UGrids and UGridsDisplayNode

Revision 6186  Directory Listing
Modified Wed Mar 12 21:49:54 2008 UTC (9 years, 6 months ago) by clisle
ENH - adding unstructuredGrid module

Revision 6185  Directory Listing
Modified Wed Mar 12 21:47:09 2008 UTC (9 years, 6 months ago) by clisle
ENH - continuing with UnstructuredGrids module

Revision 6179  Directory Listing
Modified Wed Mar 12 19:43:44 2008 UTC (9 years, 6 months ago) by clisle
ENH - adding module for unstructured grid display, based on models module

Revision 6171  Directory Listing
Modified Wed Mar 12 15:20:54 2008 UTC (9 years, 6 months ago) by bensch
ENH: Added new Module RegistrationCuda.
Only added the files yet

Revision 6148  Directory Listing
Modified Mon Mar 10 04:29:49 2008 UTC (9 years, 6 months ago) by tokuda
BUG: XYZ -> RAS in Prostate Module GUI

Revision 6138  Directory Listing
Modified Fri Mar 7 21:19:43 2008 UTC (9 years, 6 months ago) by pohl
ENH: add option to PropagateVolumeSelection so it won't fit to the volume

Revision 6135  Directory Listing
Modified Fri Mar 7 19:23:53 2008 UTC (9 years, 6 months ago) by tokuda
BUG: removed transformNode->ApplyTransform()

Revision 6134  Directory Listing
Modified Fri Mar 7 18:59:47 2008 UTC (9 years, 6 months ago) by pohl
BUG: remove slice model nodes from scene to allow dynamic addition/deletion of slicelogic instances 

Revision 6133  Directory Listing
Modified Fri Mar 7 18:38:56 2008 UTC (9 years, 6 months ago) by tokuda
BUG: Fixed OpenIGTLink bug related to previous update.

Revision 6131  Directory Listing
Modified Fri Mar 7 18:17:59 2008 UTC (9 years, 6 months ago) by tokuda
ENH: OpenIGTLink has been updated.

Revision 6129  Directory Listing
Modified Fri Mar 7 15:11:10 2008 UTC (9 years, 6 months ago) by nicky
ENH:Reimplement MIP and Isosurface rendering

Revision 6127  Directory Listing
Modified Fri Mar 7 13:41:23 2008 UTC (9 years, 6 months ago) by bensch
ENH: Added new Module RegistrationCuda.
Only added the files yet

Revision 6116  Directory Listing
Modified Thu Mar 6 20:17:16 2008 UTC (9 years, 6 months ago) by francois_budin
ENH: adding type any

Revision 6098  Directory Listing
Modified Thu Mar 6 17:26:52 2008 UTC (9 years, 6 months ago) by bensch
ENH: Moved algorithm to its own file

Revision 6096  Directory Listing
Modified Thu Mar 6 17:15:51 2008 UTC (9 years, 6 months ago) by bensch
BUG: Write to function implemented

Revision 6095  Directory Listing
Modified Thu Mar 6 16:59:00 2008 UTC (9 years, 6 months ago) by bensch
ENH: Ray Normalization done more performant

Revision 6094  Directory Listing
Modified Thu Mar 6 16:46:59 2008 UTC (9 years, 6 months ago) by millerjv
ENH: (merge from trunk) facility to allow CLI to select "any" type of volume node. (

Revision 6093  Directory Listing
Modified Thu Mar 6 16:27:26 2008 UTC (9 years, 6 months ago) by bensch
ENH: Algorithm is in its own function:
template <typename T>
__device__ void CUDAkernel_RayCastAlgorithm(const int3& index,
                                            int outindex,
                                            const float* minmax /*[6] */,
                                            const float* rayMap,
                                            const cudaVolumeInformation& volInfo,
                                            const cudaRendererInformation& renInfo,
                                            float3* outputVal,
                                            float* zBuffer,
                                            float* remainingOpacity)

Revision 6092  Directory Listing
Modified Thu Mar 6 16:09:02 2008 UTC (9 years, 6 months ago) by bensch
ENH: We only need 1 _synchronizeThreads() call

Revision 6091  Directory Listing
Modified Thu Mar 6 14:36:05 2008 UTC (9 years, 6 months ago) by bensch
ENH: New approach to Volume Ray stepping

1. we are using the Z-Buffer to step through the Volume.
2. The Matrix Transformation is correct now ass well

Revision 6079  Directory Listing
Modified Wed Mar 5 20:58:51 2008 UTC (9 years, 6 months ago) by pieper
ENH: fixes to the editor

Revision 6078  Directory Listing
Modified Wed Mar 5 20:57:41 2008 UTC (9 years, 6 months ago) by pieper
ENH: don't compress call data by default

Revision 6077  Directory Listing
Modified Wed Mar 5 20:56:55 2008 UTC (9 years, 6 months ago) by pieper
ENH: seal a leak for event broker use in modelmaker

Revision 6058  Directory Listing
Modified Tue Mar 4 16:37:50 2008 UTC (9 years, 6 months ago) by hliu
ENH: added support for TrackerDaemon.

Revision 6057  Directory Listing
Modified Tue Mar 4 16:36:54 2008 UTC (9 years, 6 months ago) by hliu
ENH: added TrackerDaemon module.

Revision 6056  Directory Listing
Modified Tue Mar 4 16:13:09 2008 UTC (9 years, 6 months ago) by bensch
ENH: Loading issue fixed

Revision 6051  Directory Listing
Modified Tue Mar 4 14:44:43 2008 UTC (9 years, 6 months ago) by hliu
STYLE: changed source code pointer from trunk to IGT2 branch.

Revision 6050  Directory Listing
Modified Tue Mar 4 14:21:33 2008 UTC (9 years, 6 months ago) by hliu
STYLE: Creating IGT2 branch.

Revision 6047  Directory Listing
Modified Tue Mar 4 01:06:17 2008 UTC (9 years, 6 months ago) by tgl
ENH: update tests to pass for LoadableModule

Revision 6046  Directory Listing
Modified Mon Mar 3 21:17:53 2008 UTC (9 years, 6 months ago) by bensch
ENH: integration of Volume Rendering with CUDA into the Volume Rendering Algorithm of Andi

Revision 6045  Directory Listing
Modified Mon Mar 3 21:17:16 2008 UTC (9 years, 6 months ago) by bensch
ENH: New way to figure out the transformations

Revision 6034  Directory Listing
Modified Sun Mar 2 16:29:02 2008 UTC (9 years, 6 months ago) by tgl
BUG: typo in Description output, mismatched tag

Revision 6031  Directory Listing
Modified Sat Mar 1 14:38:56 2008 UTC (9 years, 6 months ago) by tgl
ENH: automate generation of loadable module support like command line program support

Revision 6017  Directory Listing
Modified Fri Feb 29 20:31:24 2008 UTC (9 years, 6 months ago) by pieper
BUG: clean up leaks in filter watcher

Revision 6015  Directory Listing
Modified Fri Feb 29 19:04:32 2008 UTC (9 years, 6 months ago) by pohl
ENH: Swapped Local Registration with Intensity Normalization

Revision 6014  Directory Listing
Modified Fri Feb 29 18:23:52 2008 UTC (9 years, 6 months ago) by pohl
ENH: Disabled 3D viewer in Analysis Step - 3D Viewer is stable 

Revision 6013  Directory Listing
Modified Fri Feb 29 18:23:22 2008 UTC (9 years, 6 months ago) by pohl
ENH: Disabled 3D viewer in Analysis Step - 3D Viewer is stable 

Revision 6012  Directory Listing
Modified Fri Feb 29 18:22:57 2008 UTC (9 years, 6 months ago) by pohl
ENH: Disabled 3D viewer in Analysis Step - 3D Viewer is stable 

Revision 6009  Directory Listing
Modified Fri Feb 29 16:54:20 2008 UTC (9 years, 6 months ago) by pieper
ENH: merge from trunk

Revision 6007  Directory Listing
Modified Fri Feb 29 16:41:57 2008 UTC (9 years, 6 months ago) by pieper
ENH: merge from trunk

Revision 6006  Directory Listing
Modified Fri Feb 29 16:34:27 2008 UTC (9 years, 6 months ago) by pieper
ENH: merge from trunk

Revision 6005  Directory Listing
Modified Fri Feb 29 16:33:47 2008 UTC (9 years, 6 months ago) by pieper
ENH: merge from trunk

Revision 6004  Directory Listing
Modified Fri Feb 29 16:33:40 2008 UTC (9 years, 6 months ago) by pieper
ENH: merge from trunk

Revision 6003  Directory Listing
Modified Fri Feb 29 16:33:32 2008 UTC (9 years, 6 months ago) by pieper
ENH: merge from trunk

Revision 6002  Directory Listing
Modified Fri Feb 29 16:33:08 2008 UTC (9 years, 6 months ago) by pieper
ENH: merge from trunk

Revision 6001  Directory Listing
Modified Fri Feb 29 16:31:32 2008 UTC (9 years, 6 months ago) by pieper
ENH: merge from trunk

Revision 5998  Directory Listing
Modified Fri Feb 29 15:17:18 2008 UTC (9 years, 6 months ago) by pieper
ENH: switch callData from vector to deque to handle multiple call data values better expecially when they are added from within a callback

Revision 5997  Directory Listing
Modified Fri Feb 29 15:15:46 2008 UTC (9 years, 6 months ago) by pieper
ENH: switch slice logic to use event broker

Revision 5996  Directory Listing
Modified Fri Feb 29 15:14:26 2008 UTC (9 years, 6 months ago) by pieper
STYLE: fix typo in comment

Revision 5995  Directory Listing
Modified Fri Feb 29 15:13:56 2008 UTC (9 years, 6 months ago) by pieper
ENH: fix typo in function name

Revision 5994  Directory Listing
Modified Thu Feb 28 22:17:02 2008 UTC (9 years, 7 months ago) by francois_budin
ENH: Default Spline Order

Revision 5993  Directory Listing
Modified Thu Feb 28 22:12:55 2008 UTC (9 years, 7 months ago) by clisle
BUG: fixing fE element rendering in Meshing Workflow module

Revision 5992  Directory Listing
Modified Thu Feb 28 22:10:39 2008 UTC (9 years, 7 months ago) by francois_budin
ENH: interface improvement

Revision 5990  Directory Listing
Modified Thu Feb 28 19:46:48 2008 UTC (9 years, 7 months ago) by francois_budin
ENH: bug correction

Revision 5989  Directory Listing
Modified Thu Feb 28 19:38:43 2008 UTC (9 years, 7 months ago) by francois_budin
ENH: Interface improvement

Revision 5988  Directory Listing
Modified Thu Feb 28 18:22:41 2008 UTC (9 years, 7 months ago) by clisle
BUG: added color to FE Mesh rendering by using MRMLColorTableNode and setting ScalarVisibilility on the display node

Revision 5987  Directory Listing
Modified Thu Feb 28 16:46:33 2008 UTC (9 years, 7 months ago) by pohl
ENH: 3D visualization capabilities for every step

Revision 5986  Directory Listing
Modified Thu Feb 28 16:46:03 2008 UTC (9 years, 7 months ago) by pohl
ENH: 3D visualization capabilities for every step

Revision 5985  Directory Listing
Modified Thu Feb 28 16:44:33 2008 UTC (9 years, 7 months ago) by pohl
ENH: 3D visualization capabilities for every step

Revision 5984  Directory Listing
Modified Thu Feb 28 16:08:14 2008 UTC (9 years, 7 months ago) by clisle
BUG: Fixing rendering of Finite Element UGrid datasets in Slicer

Revision 5983  Directory Listing
Modified Thu Feb 28 15:42:47 2008 UTC (9 years, 7 months ago) by francois_budin
ENH: Adding ResampleVolume2 module

Revision 5982  Directory Listing
Modified Thu Feb 28 15:24:54 2008 UTC (9 years, 7 months ago) by francois_budin
ENH: Correcting RAS transform bug

Revision 5980  Directory Listing
Modified Wed Feb 27 04:28:00 2008 UTC (9 years, 7 months ago) by pohl
ENH: Added Slice Controll to Segment Step

Revision 5979  Directory Listing
Modified Wed Feb 27 04:27:38 2008 UTC (9 years, 7 months ago) by pohl
ENH: Added Slice Controll to Segment Step

Revision 5978  Directory Listing
Modified Wed Feb 27 04:26:25 2008 UTC (9 years, 7 months ago) by pohl
ENH: Added Slice Controll to Segment Step

Revision 5977  Directory Listing
Modified Wed Feb 27 04:26:08 2008 UTC (9 years, 7 months ago) by pohl
ENH: Added Slice Controll to Segment Step

Revision 5975  Directory Listing
Modified Tue Feb 26 22:06:17 2008 UTC (9 years, 7 months ago) by pieper
ENH: fix slice visibility issue

Revision 5974  Directory Listing
Modified Tue Feb 26 20:41:52 2008 UTC (9 years, 7 months ago) by bensch
ENH: some nicer code and more settings for the VolumeRendering stuff

Revision 5973  Directory Listing
Modified Tue Feb 26 20:41:30 2008 UTC (9 years, 7 months ago) by bensch
BUG: Fixed a possible bug in the CUDA code

posX, posY, 0.0 
to
posX, posY, posZ

Revision 5972  Directory Listing
Modified Tue Feb 26 19:49:17 2008 UTC (9 years, 7 months ago) by bensch
ENH: Reformat source

Revision 5970  Directory Listing
Modified Tue Feb 26 09:13:03 2008 UTC (9 years, 7 months ago) by pohl
ENH: Registration works right now even through we assume the same orientation

Revision 5969  Directory Listing
Modified Tue Feb 26 07:12:28 2008 UTC (9 years, 7 months ago) by pohl
ENH: Work on Making Registration Work

Revision 5968  Directory Listing
Modified Tue Feb 26 07:11:39 2008 UTC (9 years, 7 months ago) by pohl
ENH: Work on Making Registration Work

Revision 5967  Directory Listing
Modified Tue Feb 26 07:11:20 2008 UTC (9 years, 7 months ago) by pohl
ENH: Work on Making Registration Work

Revision 5966  Directory Listing
Modified Tue Feb 26 07:10:39 2008 UTC (9 years, 7 months ago) by pohl
ENH: Work on Making Registration Work

Revision 5965  Directory Listing
Modified Tue Feb 26 07:09:46 2008 UTC (9 years, 7 months ago) by pohl
ENH: Work on Making Registration Work

Revision 5964  Directory Listing
Modified Tue Feb 26 07:09:25 2008 UTC (9 years, 7 months ago) by pohl
ENH: Work on Making Registration Work

Revision 5963  Directory Listing
Modified Tue Feb 26 04:15:17 2008 UTC (9 years, 7 months ago) by tgl
ENH: added TCL initialization to the list of things "loaded"

Revision 5957  Directory Listing
Modified Mon Feb 25 21:55:43 2008 UTC (9 years, 7 months ago) by bensch
ENH: Lung data loaded

Revision 5956  Directory Listing
Modified Mon Feb 25 21:55:22 2008 UTC (9 years, 7 months ago) by clisle
BUG: cleaning up non-working GUI elements in Meshing module 

Revision 5955  Directory Listing
Modified Mon Feb 25 20:27:02 2008 UTC (9 years, 7 months ago) by bensch
ENH: corrected zooming

Revision 5953  Directory Listing
Modified Mon Feb 25 18:12:27 2008 UTC (9 years, 7 months ago) by tokuda
BUG: Real-time image position in OpenIGTLinkDaemon.


Revision 5952  Directory Listing
Modified Mon Feb 25 17:37:46 2008 UTC (9 years, 7 months ago) by bensch
ENH: minor adjustment to the loading process

Revision 5951  Directory Listing
Modified Mon Feb 25 16:45:50 2008 UTC (9 years, 7 months ago) by pieper
ENH: use RequestRender to avoid extra render time

Revision 5950  Directory Listing
Modified Mon Feb 25 16:44:55 2008 UTC (9 years, 7 months ago) by pieper
ENH: adjust logic for displayable management

Revision 5948  Directory Listing
Modified Mon Feb 25 16:44:03 2008 UTC (9 years, 7 months ago) by pieper
ENH: extra methods for accessing observations and rework process for removing them

Revision 5947  Directory Listing
Modified Mon Feb 25 16:29:54 2008 UTC (9 years, 7 months ago) by bensch
BUG: crashed when the memorySize changed

Revision 5945  Directory Listing
Modified Mon Feb 25 15:51:15 2008 UTC (9 years, 7 months ago) by francois_budin
ENH: Changed default Transform to affine

Revision 5941  Directory Listing
Modified Mon Feb 25 14:07:59 2008 UTC (9 years, 7 months ago) by bensch
ENH: example should load faster

Revision 5940  Directory Listing
Modified Sun Feb 24 20:46:48 2008 UTC (9 years, 7 months ago) by bensch
ENH: removed unused function

Revision 5939  Directory Listing
Modified Sun Feb 24 19:14:37 2008 UTC (9 years, 7 months ago) by pohl
ENH: CMD Line Module works now - in addition fixed bug in pipeline - vtkImageKilianDistanceTransform does currently not work correctly - fix it later 

Revision 5938  Directory Listing
Modified Sun Feb 24 19:13:50 2008 UTC (9 years, 7 months ago) by pohl
ENH: CMD Line Module works now - in addition fixed bug in pipeline - vtkImageKilianDistanceTransform does currently not work correctly - fix it later 

Revision 5937  Directory Listing
Modified Sun Feb 24 19:12:53 2008 UTC (9 years, 7 months ago) by pohl
ENH: CMD Line Module works now - in addition fixed bug in pipeline - vtkImageKilianDistanceTransform does currently not work correctly - fix it later 

Revision 5936  Directory Listing
Modified Sun Feb 24 17:58:48 2008 UTC (9 years, 7 months ago) by bensch
ENH: Integrated a scale factor to speedup rendering performance when needed.

As a further step we can think of implementing a Progressive Refinement... that would be great

Revision 5934  Directory Listing
Modified Fri Feb 22 23:50:19 2008 UTC (9 years, 7 months ago) by bensch
ENH: Setting Matrix

Revision 5933  Directory Listing
Modified Fri Feb 22 22:57:13 2008 UTC (9 years, 7 months ago) by bensch
ENH: minor

Revision 5932  Directory Listing
Modified Fri Feb 22 22:54:27 2008 UTC (9 years, 7 months ago) by bensch
ENH: Deleted unused files

Revision 5931  Directory Listing
Modified Fri Feb 22 22:16:41 2008 UTC (9 years, 7 months ago) by bensch
ENH: Minor cleanup

Revision 5929  Directory Listing
Modified Fri Feb 22 22:04:33 2008 UTC (9 years, 7 months ago) by bensch
ENH: Only updates required fields of cudaVolumeInfoHandler

Revision 5928  Directory Listing
Modified Fri Feb 22 20:57:38 2008 UTC (9 years, 7 months ago) by bensch
ENH: also in the algorithm

Revision 5927  Directory Listing
Modified Fri Feb 22 20:56:43 2008 UTC (9 years, 7 months ago) by bensch
ENH: Using Constant Values for structs for a much faster upload

Revision 5923  Directory Listing
Modified Fri Feb 22 18:13:51 2008 UTC (9 years, 7 months ago) by bensch
ENH: removed unused variables

Revision 5922  Directory Listing
Modified Fri Feb 22 17:50:14 2008 UTC (9 years, 7 months ago) by bensch
ENH: conformity

Revision 5921  Directory Listing
Modified Fri Feb 22 17:38:05 2008 UTC (9 years, 7 months ago) by bensch
ENH: A lot more similar behaviour than the original VolumeRenderer

Revision 5919  Directory Listing
Modified Fri Feb 22 16:30:32 2008 UTC (9 years, 7 months ago) by pieper
ENH: don't let the vtkKWRenderWidget do automatic renders for situatios like changes to the annotations - instead only render when the vtkSlicerSliceViewer wants to render (after idle).  Also explicily handle expose events in the SliceSWidget that were previously handled automatically by the vtkKWRenderWidget

Revision 5917  Directory Listing
Modified Thu Feb 21 22:07:16 2008 UTC (9 years, 7 months ago) by bensch
ENH: Pack algo into function #2 RayMinMax

Revision 5915  Directory Listing
Modified Thu Feb 21 21:51:32 2008 UTC (9 years, 7 months ago) by bensch
ENH: Pack algo into function #1

Revision 5913  Directory Listing
Modified Thu Feb 21 21:48:12 2008 UTC (9 years, 7 months ago) by clisle
ENH - Fixed changes to lists so names will come out correctly on UGrid nodes in the SlicerMRMLSaveDataWidget.


Revision 5910  Directory Listing
Modified Thu Feb 21 21:18:14 2008 UTC (9 years, 7 months ago) by bensch
ENH: optimized headers

Revision 5909  Directory Listing
Modified Thu Feb 21 21:13:39 2008 UTC (9 years, 7 months ago) by bensch
ENH: minor cleanup

Revision 5908  Directory Listing
Modified Thu Feb 21 21:04:26 2008 UTC (9 years, 7 months ago) by bensch
BUG: Spacing is set correctly

Revision 5907  Directory Listing
Modified Thu Feb 21 20:12:46 2008 UTC (9 years, 7 months ago) by bensch
BUG: MemoryAllocation bug fixed. Now the 3D image is loaded correctly onto the Cuda Card.
BUG: Fixed another bug related that filled the lowest row of the model with useless data

GetActualMemorySize is actualy not the actualmemorysize... who would have guessed that, but hey, it is opensource, maybe I should have read the whole source to get tto know this :)

Revision 5906  Directory Listing
Modified Thu Feb 21 19:37:28 2008 UTC (9 years, 7 months ago) by pieper
ENH: make compression of callData pointers optional with the default being ON since this will give maximum speedup

Revision 5905  Directory Listing
Modified Thu Feb 21 18:38:41 2008 UTC (9 years, 7 months ago) by francois_budin
ENH: correct measurement frame problem

Revision 5904  Directory Listing
Modified Thu Feb 21 17:15:28 2008 UTC (9 years, 7 months ago) by bensch
ENH: moved the camera calculations out of the algorithm

Revision 5903  Directory Listing
Modified Thu Feb 21 16:31:50 2008 UTC (9 years, 7 months ago) by bensch
ENH: cleanup

Revision 5902  Directory Listing
Modified Thu Feb 21 16:29:22 2008 UTC (9 years, 7 months ago) by francois_budin
ENH: Correcting eigenvectors computation

Revision 5900  Directory Listing
Modified Thu Feb 21 14:47:35 2008 UTC (9 years, 7 months ago) by bensch
ENH: Simple adjustments to the pipeline

Revision 5899  Directory Listing
Modified Thu Feb 21 14:27:10 2008 UTC (9 years, 7 months ago) by bensch
BUG: Renderplane of the VolumeMapper is not fit onto a 2D plane on top of the renderstack.
Before the VolumeMapper rendered onto a plane in 3d-space without the DEPTH Buffer disabled. 

Revision 5898  Directory Listing
Modified Thu Feb 21 13:59:16 2008 UTC (9 years, 7 months ago) by pieper
ENH: extra logic to handle multiple callData instances

Revision 5897  Directory Listing
Modified Thu Feb 21 00:43:01 2008 UTC (9 years, 7 months ago) by bensch
BUG: Initial Value might not have been set

Revision 5896  Directory Listing
Modified Thu Feb 21 00:28:08 2008 UTC (9 years, 7 months ago) by bensch
ENH: Uncommented Transform

Revision 5895  Directory Listing
Modified Thu Feb 21 00:26:41 2008 UTC (9 years, 7 months ago) by pohl
STYLE: checked in this code by mistake

Revision 5894  Directory Listing
Modified Thu Feb 21 00:26:29 2008 UTC (9 years, 7 months ago) by pohl
STYLE: checked in this code by mistake

Revision 5893  Directory Listing
Modified Thu Feb 21 00:22:31 2008 UTC (9 years, 7 months ago) by bensch
BUG: reverted changes

Revision 5892  Directory Listing
Modified Wed Feb 20 23:21:42 2008 UTC (9 years, 7 months ago) by bensch
BUG fixed in all values.

Revision 5891  Directory Listing
Modified Wed Feb 20 23:19:39 2008 UTC (9 years, 7 months ago) by bensch
ENH: VolumeTransform Matrix part1

Revision 5890  Directory Listing
Modified Wed Feb 20 22:47:38 2008 UTC (9 years, 7 months ago) by bensch
ENH: update

Revision 5889  Directory Listing
Modified Wed Feb 20 22:03:50 2008 UTC (9 years, 7 months ago) by pieper
BUG: fix bad logic for adding callData to observation list

Revision 5888  Directory Listing
Modified Wed Feb 20 21:51:52 2008 UTC (9 years, 7 months ago) by pieper
ENH: add logic for multiple callData pointers per Observation (being debugged)

Revision 5886  Directory Listing
Modified Wed Feb 20 20:35:54 2008 UTC (9 years, 7 months ago) by bensch
ENH: cleaner interface to the CudaSupport memory

Revision 5884  Directory Listing
Modified Wed Feb 20 19:42:36 2008 UTC (9 years, 7 months ago) by pieper
ENH: move event logging before invocation of the event (in case the observation gets deleted during invocation).  Also add a hook for debugging to check for cases where callData changes

Revision 5882  Directory Listing
Modified Wed Feb 20 18:25:40 2008 UTC (9 years, 7 months ago) by clisle
BUG: Fixed MRML-backed lists for BBlock and FEMesh.  These data classes now render in Slicer! 

Revision 5881  Directory Listing
Modified Wed Feb 20 16:39:36 2008 UTC (9 years, 7 months ago) by clisle
BUG: Finite Element bbox renders now.  display and storage nodes needed to be added to scene first before linkages made to them. 

Revision 5880  Directory Listing
Modified Wed Feb 20 14:25:03 2008 UTC (9 years, 7 months ago) by clisle
ENH - adding vtkMRMLFiniteElementMeshDisplayNode

Revision 5879  Directory Listing
Modified Wed Feb 20 14:24:04 2008 UTC (9 years, 7 months ago) by clisle
ENH-adding MRMLFiniteElementMeshDisplayNode

Revision 5878  Directory Listing
Modified Wed Feb 20 14:17:04 2008 UTC (9 years, 7 months ago) by clisle
ENH- meshing pipeline functions now, but doesn't display unstructured grid yet. 

Revision 5877  Directory Listing
Modified Wed Feb 20 00:38:16 2008 UTC (9 years, 7 months ago) by pohl
ENH: added Diffeomorphic Demons Registration

Revision 5876  Directory Listing
Modified Wed Feb 20 00:37:32 2008 UTC (9 years, 7 months ago) by pohl
ENH: added Diffeomorphic Demons Registration

Revision 5875  Directory Listing
Modified Wed Feb 20 00:33:13 2008 UTC (9 years, 7 months ago) by pohl
ENH: added Enders Metric

Revision 5874  Directory Listing
Modified Wed Feb 20 00:32:15 2008 UTC (9 years, 7 months ago) by pohl
ENH: added Enders Metric

Revision 5873  Directory Listing
Modified Wed Feb 20 00:32:00 2008 UTC (9 years, 7 months ago) by pohl
ENH: added Enders Metric

Revision 5872  Directory Listing
Modified Wed Feb 20 00:27:38 2008 UTC (9 years, 7 months ago) by pohl
ENH: added Enders Metric

Revision 5871  Directory Listing
Modified Wed Feb 20 00:27:07 2008 UTC (9 years, 7 months ago) by pohl
ENH: added Enders Metric

Revision 5870  Directory Listing
Modified Tue Feb 19 18:04:44 2008 UTC (9 years, 7 months ago) by clisle
ENH - Can run through FE Meshing pipeline now; surf -> bblock -> meshing

Revision 5869  Directory Listing
Modified Tue Feb 19 18:02:28 2008 UTC (9 years, 7 months ago) by clisle
ENH - enable model subclasses in rendering in vtkSlicerModelsGUI.cxx "SetChildClassesEnabled" turned on.   

Revision 5867  Directory Listing
Modified Tue Feb 19 14:20:07 2008 UTC (9 years, 7 months ago) by pieper
ENH: flush all pending tcl events before invoking pending vtk events - should reduce number of redundant callback invocations

Revision 5866  Directory Listing
Modified Tue Feb 19 14:19:18 2008 UTC (9 years, 7 months ago) by pieper
BUG: use RequestRender rather than Render - this will remove unneeded screen updates

Revision 5854  Directory Listing
Modified Sat Feb 16 21:59:29 2008 UTC (9 years, 7 months ago) by pieper
ENH: switch SWidget classes to use EventBroker

Revision 5850  Directory Listing
Modified Fri Feb 15 23:00:34 2008 UTC (9 years, 7 months ago) by bensch
ENH: Z-Buffer calculation

Revision 5845  Directory Listing
Modified Fri Feb 15 20:53:10 2008 UTC (9 years, 7 months ago) by bensch
ENH: Stepping Size can be adjusted, but the colors are changed with this as well

Revision 5844  Directory Listing
Modified Fri Feb 15 20:08:02 2008 UTC (9 years, 7 months ago) by bensch
ENH: unsigned char to float data type.

Revision 5843  Directory Listing
Modified Fri Feb 15 16:57:40 2008 UTC (9 years, 7 months ago) by bensch
ENH: Using vector_types instead of arrays
some more fixes

Revision 5840  Directory Listing
Modified Thu Feb 14 19:13:07 2008 UTC (9 years, 7 months ago) by pieper
ENH: add CallData field to observation

Revision 5838  Directory Listing
Modified Thu Feb 14 07:35:12 2008 UTC (9 years, 7 months ago) by nicky
ENH:Putting focal point at the center of the data

Revision 5837  Directory Listing
Modified Thu Feb 14 07:25:20 2008 UTC (9 years, 7 months ago) by nicky
ENH:Solving empty pixels problem

Revision 5836  Directory Listing
Modified Thu Feb 14 06:37:24 2008 UTC (9 years, 7 months ago) by nicky
ENH:Correcting trilinear transformation to support multi datatype

Revision 5834  Directory Listing
Modified Wed Feb 13 20:58:37 2008 UTC (9 years, 7 months ago) by hayes
BUG: merging fix from trunk to fix crash when reading DICOMs

Revision 5833  Directory Listing
Modified Wed Feb 13 20:08:12 2008 UTC (9 years, 7 months ago) by bensch
BUG: Compiles again

Revision 5832  Directory Listing
Modified Wed Feb 13 20:03:23 2008 UTC (9 years, 7 months ago) by bensch
ENH: renamed vtkVolumeCudaMapper to vtkCudaVolumeMapper

Revision 5831  Directory Listing
Modified Wed Feb 13 19:08:24 2008 UTC (9 years, 7 months ago) by bensch
ENH: interchange with VTK

Revision 5830  Directory Listing
Modified Wed Feb 13 16:34:57 2008 UTC (9 years, 7 months ago) by pohl
ENH: Added Grid and Snaphost Functionality

Revision 5829  Directory Listing
Modified Wed Feb 13 13:47:09 2008 UTC (9 years, 7 months ago) by bensch
ENH: Added Types to the CUDA_RenderAlgo

Revision 5828  Directory Listing
Modified Wed Feb 13 12:53:43 2008 UTC (9 years, 7 months ago) by nicky
BUG:make sure that calculation of tempIndex is within range of float

Revision 5827  Directory Listing
Modified Wed Feb 13 12:34:28 2008 UTC (9 years, 7 months ago) by nicky
ENH:Add support for multiple data size

Revision 5826  Directory Listing
Modified Wed Feb 13 02:36:00 2008 UTC (9 years, 7 months ago) by tgl
ENH: adding back VRModule in non-loadable mode

Revision 5825  Directory Listing
Modified Tue Feb 12 23:42:58 2008 UTC (9 years, 7 months ago) by bensch
ENH: VoxelSize is now called Spacing and is being updated from vtkImageData in vtkCudaVolumeInformationHandler

Revision 5824  Directory Listing
Modified Tue Feb 12 23:09:30 2008 UTC (9 years, 7 months ago) by bensch
BUG: Typo

Revision 5823  Directory Listing
Modified Tue Feb 12 23:00:19 2008 UTC (9 years, 7 months ago) by bensch
ENH: Extended TypeRange to all datatypes

Revision 5822  Directory Listing
Modified Tue Feb 12 22:51:31 2008 UTC (9 years, 7 months ago) by bensch
ENH: Added Type Ranges

Revision 5821  Directory Listing
Modified Tue Feb 12 19:50:17 2008 UTC (9 years, 7 months ago) by bensch
BUG: Blend Function is now set correctly

Revision 5820  Directory Listing
Modified Tue Feb 12 19:25:44 2008 UTC (9 years, 7 months ago) by pieper
ENH: moving code from trunk to branch

Revision 5819  Directory Listing
Modified Tue Feb 12 19:25:07 2008 UTC (9 years, 7 months ago) by pieper
ENH: moving code from trunk to branch

Revision 5818  Directory Listing
Modified Tue Feb 12 19:22:51 2008 UTC (9 years, 7 months ago) by pieper
ENH: move code from trunk to branch

Revision 5817  Directory Listing
Modified Tue Feb 12 19:20:09 2008 UTC (9 years, 7 months ago) by pieper
ENH: new class from trunk

Revision 5816  Directory Listing
Modified Tue Feb 12 19:13:04 2008 UTC (9 years, 7 months ago) by pieper
ENH: merge from latest trunk plus switch ObserverManager and classes that use it over to EventBroker

Revision 5815  Directory Listing
Modified Tue Feb 12 19:12:13 2008 UTC (9 years, 7 months ago) by pieper
ENH: merge from latest trunk plus switch ObserverManager and classes that use it over to EventBroker

Revision 5812  Directory Listing
Modified Tue Feb 12 17:00:56 2008 UTC (9 years, 7 months ago) by tokuda
ENH: OpenIGTLink with tracker.



Revision 5811  Directory Listing
Modified Tue Feb 12 16:22:05 2008 UTC (9 years, 7 months ago) by francois_budin
ENH: Adding ResampleDTI directory in the SUBDIRS list 

Revision 5810  Directory Listing
Modified Tue Feb 12 16:18:29 2008 UTC (9 years, 7 months ago) by francois_budin
ENH: Adding ResampleDTI module

Revision 5809  Directory Listing
Modified Tue Feb 12 15:23:16 2008 UTC (9 years, 7 months ago) by bensch
ENH: VolumeRendering works

Revision 5808  Directory Listing
Modified Tue Feb 12 14:53:32 2008 UTC (9 years, 7 months ago) by bensch
BUG: recalculate

Revision 5807  Directory Listing
Modified Tue Feb 12 14:38:38 2008 UTC (9 years, 7 months ago) by pieper
ENH: merge from latest trunk plus switch ObserverManager and classes that use it over to EventBroker

Revision 5806  Directory Listing
Modified Tue Feb 12 14:36:47 2008 UTC (9 years, 7 months ago) by pieper
ENH: merge from latest trunk plus switch ObserverManager and classes that use it over to EventBroker

Revision 5805  Directory Listing
Modified Tue Feb 12 06:11:09 2008 UTC (9 years, 7 months ago) by tgl
ENH: make GAD loadable.  Fixup LoadableModuleFactory so that it
caches module information by short name.  Adding LoadableModuleDescriptionParser, it was missed last changeset.

Revision 5804  Directory Listing
Modified Tue Feb 12 05:10:20 2008 UTC (9 years, 7 months ago) by nicky
BUG:Repairing output image range 0-256 -> 0-255

Revision 5803  Directory Listing
Modified Tue Feb 12 00:42:31 2008 UTC (9 years, 7 months ago) by pieper
ENH: merge from latest trunk plus switch ObserverManager and classes that use it over to EventBroker

Revision 5802  Directory Listing
Modified Tue Feb 12 00:42:11 2008 UTC (9 years, 7 months ago) by pieper
ENH: merge from latest trunk plus switch ObserverManager and classes that use it over to EventBroker

Revision 5801  Directory Listing
Modified Mon Feb 11 23:49:05 2008 UTC (9 years, 7 months ago) by pieper
ENH: merge from latest trunk plus switch ObserverManager and classes that use it over to EventBroker

Revision 5800  Directory Listing
Modified Mon Feb 11 18:23:41 2008 UTC (9 years, 7 months ago) by pieper
ENH: switch to asynchronous mode by default

Revision 5798  Directory Listing
Modified Mon Feb 11 17:21:05 2008 UTC (9 years, 7 months ago) by nicky
ENH:use remaining opacity for alpha output

Revision 5797  Directory Listing
Modified Mon Feb 11 17:01:02 2008 UTC (9 years, 7 months ago) by nicky
ENH:implement remaining_opacity as in vtkVolumeRayCastCompositeFunction

Revision 5796  Directory Listing
Modified Mon Feb 11 15:21:04 2008 UTC (9 years, 7 months ago) by tokuda
ENH: Partial 3D Volume Update is now working!

Revision 5795  Directory Listing
Modified Mon Feb 11 15:04:33 2008 UTC (9 years, 7 months ago) by bensch
ENH: Choosing the input model works

Revision 5794  Directory Listing
Modified Mon Feb 11 13:37:46 2008 UTC (9 years, 7 months ago) by bensch
ENH: Removed unused files (strange they were still around)

Revision 5792  Directory Listing
Modified Mon Feb 11 03:14:06 2008 UTC (9 years, 7 months ago) by nicky
ENH:create function for trilinear interpolation and correcting camera position

Revision 5789  Directory Listing
Modified Sun Feb 10 17:38:44 2008 UTC (9 years, 7 months ago) by tokuda
ENH: Added igtlutil for OpenIGTLink.


Revision 5786  Directory Listing
Modified Sat Feb 9 19:52:26 2008 UTC (9 years, 7 months ago) by tokuda
BUG: Fixed size of DEVICE_TYPE in OpenIGTLink oprotocol.


Revision 5785  Directory Listing
Modified Sat Feb 9 19:51:30 2008 UTC (9 years, 7 months ago) by tokuda
BUG: Fixed size of DEVICE_TYPE field in OpenIGTLink protocol.


Revision 5782  Directory Listing
Modified Fri Feb 8 22:31:56 2008 UTC (9 years, 7 months ago) by bensch
COMP: Compiles on Windows as well

Revision 5778  Directory Listing
Modified Fri Feb 8 21:47:32 2008 UTC (9 years, 7 months ago) by bensch
BUG: Compiles on Linux

Revision 5777  Directory Listing
Modified Fri Feb 8 21:43:20 2008 UTC (9 years, 7 months ago) by tokuda
BUG: Added vtkOpenIGTLinkDaemonWin32Header.h to the repository.


Revision 5776  Directory Listing
Modified Fri Feb 8 21:39:52 2008 UTC (9 years, 7 months ago) by tokuda
ENH: Added OpenIGTLink Daemon Module.


Revision 5775  Directory Listing
Modified Fri Feb 8 21:26:10 2008 UTC (9 years, 7 months ago) by bensch
ENH: Merged the cuda branche back here. 
Merged with the two commands and did not use the back-merge
svn merge http://www.na-mic.org/svn/Slicer3/branches/cuda . -r5135:5509
svn merge http://www.na-mic.org/svn/Slicer3/branches/cuda . -r5511:HEAD
No conflicts

Revision 5773  Directory Listing
Modified Fri Feb 8 21:21:08 2008 UTC (9 years, 7 months ago) by tokuda
BUG: matrix calculation



Revision 5771  Directory Listing
Modified Fri Feb 8 20:56:56 2008 UTC (9 years, 7 months ago) by bensch
ENH: Created a merging branche to fix igt and cuda into the trunk

Revision 5765  Directory Listing
Modified Fri Feb 8 13:35:47 2008 UTC (9 years, 7 months ago) by bensch
ENH: CMakeList upgrades and some cleanup

Revision 5764  Directory Listing
Modified Fri Feb 8 05:49:47 2008 UTC (9 years, 7 months ago) by nicky
BUG:correcting z-buffer into distance from camera in mm.

Revision 5763  Directory Listing
Modified Thu Feb 7 21:37:31 2008 UTC (9 years, 7 months ago) by bensch
ENH: Naming Conventions

Revision 5762  Directory Listing
Modified Thu Feb 7 21:29:16 2008 UTC (9 years, 7 months ago) by bensch
ENH: The clipping Range is set correctly

Revision 5761  Directory Listing
Modified Thu Feb 7 21:14:27 2008 UTC (9 years, 7 months ago) by bensch
ENH: Moved more functionality out of the Main classZBuffer and MemoryTexture is now in the RendererInformationMaybe I will rename the RendererInformation class at some point...

Revision 5760  Directory Listing
Modified Thu Feb 7 20:31:49 2008 UTC (9 years, 7 months ago) by bensch
ENH: Cleanup

Revision 5759  Directory Listing
Modified Thu Feb 7 20:22:00 2008 UTC (9 years, 7 months ago) by bensch
ENH: Implemented the MemoryTexture that handles copying from and to Texture memory in Cuda internally.

Revision 5758  Directory Listing
Modified Thu Feb 7 20:15:56 2008 UTC (9 years, 7 months ago) by pohl
ENH: Added functionality so that you can save results, Provide interface for different metrices, and now defines upper and lower threshold

Revision 5757  Directory Listing
Modified Thu Feb 7 20:15:44 2008 UTC (9 years, 7 months ago) by pohl
ENH: Added functionality so that you can save results, Provide interface for different metrices, and now defines upper and lower threshold

Revision 5756  Directory Listing
Modified Thu Feb 7 20:14:19 2008 UTC (9 years, 7 months ago) by pohl
ENH: Added functionality so that you can save results, Provide interface for different metrices, and now defines upper and lower threshold

Revision 5752  Directory Listing
Modified Thu Feb 7 16:25:03 2008 UTC (9 years, 7 months ago) by bensch
ENH: minor cleanup

Revision 5751  Directory Listing
Modified Thu Feb 7 16:10:52 2008 UTC (9 years, 7 months ago) by bensch
BUG: fixed exit of program error

Revision 5749  Directory Listing
Modified Thu Feb 7 15:41:43 2008 UTC (9 years, 7 months ago) by bensch
ENH: Moved a lot of the functionality of the Cuda Rendering Process into:
vtkCudaVolumeInformationHandler and
vtkCudaRendererInformationHandler

Revision 5747  Directory Listing
Modified Thu Feb 7 15:15:17 2008 UTC (9 years, 7 months ago) by millerjv
BUG: rollback a change.

Revision 5746  Directory Listing
Modified Thu Feb 7 14:51:14 2008 UTC (9 years, 7 months ago) by millerjv
ENH: a bit more support for transform IO. Initial setup for nonlinear transforms.

Revision 5745  Directory Listing
Modified Thu Feb 7 14:34:20 2008 UTC (9 years, 7 months ago) by bensch
ENH: Typo

Revision 5744  Directory Listing
Modified Thu Feb 7 13:54:35 2008 UTC (9 years, 7 months ago) by bensch
ENH: refinement

Revision 5743  Directory Listing
Modified Thu Feb 7 13:19:17 2008 UTC (9 years, 7 months ago) by bensch
ENH: Added new Classes that shall handle the cuda comunication

Revision 5742  Directory Listing
Modified Thu Feb 7 13:16:34 2008 UTC (9 years, 7 months ago) by nicky
BUG: Correcting ray tracing step size

Revision 5740  Directory Listing
Modified Thu Feb 7 00:34:21 2008 UTC (9 years, 7 months ago) by pohl
ENH: Added Backawrds button and save intermediate results 

Revision 5739  Directory Listing
Modified Thu Feb 7 00:32:35 2008 UTC (9 years, 7 months ago) by pohl
ENH: Added Backawrds button and save intermediate results 

Revision 5738  Directory Listing
Modified Thu Feb 7 00:32:20 2008 UTC (9 years, 7 months ago) by pohl
ENH: Added Backawrds button and save intermediate results 

Revision 5737  Directory Listing
Modified Thu Feb 7 00:31:49 2008 UTC (9 years, 7 months ago) by pohl
ENH: Added Backawrds button and save intermediate results 

Revision 5736  Directory Listing
Modified Thu Feb 7 00:14:07 2008 UTC (9 years, 7 months ago) by bensch
ENH: easier setup and cleanup

Revision 5733  Directory Listing
Modified Wed Feb 6 22:47:50 2008 UTC (9 years, 7 months ago) by bensch
ENH: phase6

Revision 5731  Directory Listing
Modified Wed Feb 6 22:31:02 2008 UTC (9 years, 7 months ago) by bensch
ENH: Movement phase5

Revision 5730  Directory Listing
Modified Wed Feb 6 22:27:15 2008 UTC (9 years, 7 months ago) by bensch
ENH: Movement phase4

Revision 5728  Directory Listing
Modified Wed Feb 6 22:07:22 2008 UTC (9 years, 7 months ago) by bensch
ENH: Movement phase3

Revision 5726  Directory Listing
Modified Wed Feb 6 21:57:21 2008 UTC (9 years, 7 months ago) by bensch
ENH: Removed Hybrid Rendering

Revision 5725  Directory Listing
Modified Wed Feb 6 21:14:00 2008 UTC (9 years, 7 months ago) by bensch
ENH: less overhead while calling cuda function

Revision 5724  Directory Listing
Modified Wed Feb 6 21:04:54 2008 UTC (9 years, 7 months ago) by bensch
ENH: Movement phase2

Revision 5723  Directory Listing
Modified Wed Feb 6 20:58:15 2008 UTC (9 years, 7 months ago) by bensch
ENH: Movement phase1

Revision 5722  Directory Listing
Modified Wed Feb 6 20:41:31 2008 UTC (9 years, 7 months ago) by bensch
ENH: better structs

Revision 5721  Directory Listing
Modified Wed Feb 6 19:27:59 2008 UTC (9 years, 7 months ago) by bensch
ENH: Volume and Renderer Setters

Revision 5720  Directory Listing
Modified Wed Feb 6 18:01:11 2008 UTC (9 years, 7 months ago) by bensch
ENH: Added new Structures for easier communication

Revision 5719  Directory Listing
Modified Wed Feb 6 16:59:52 2008 UTC (9 years, 7 months ago) by bensch
ENH: MRML loading works
Fixed Color Method

Revision 5718  Directory Listing
Modified Wed Feb 6 16:01:52 2008 UTC (9 years, 7 months ago) by bensch
ENH: removed unused tags.

Revision 5716  Directory Listing
Modified Wed Feb 6 15:42:57 2008 UTC (9 years, 7 months ago) by bensch
BUG: Rotation is correct now in the renderer

Revision 5715  Directory Listing
Modified Wed Feb 6 15:26:15 2008 UTC (9 years, 7 months ago) by bensch
ENH: copy Constructors and operator= overloaded and functioning for all linear memories

Revision 5714  Directory Listing
Modified Wed Feb 6 15:12:24 2008 UTC (9 years, 7 months ago) by bensch
ENH: Constanting functions

Revision 5712  Directory Listing
Modified Wed Feb 6 14:54:57 2008 UTC (9 years, 7 months ago) by bensch
ENH: virtualizing the PrintSelf function

Revision 5711  Directory Listing
Modified Wed Feb 6 14:44:24 2008 UTC (9 years, 7 months ago) by bensch
ENH: moved all the cuda classes into their Namespace

Revision 5709  Directory Listing
Modified Wed Feb 6 13:21:55 2008 UTC (9 years, 7 months ago) by bensch
ENH: Z-Buffer integration tested.

Revision 5705  Directory Listing
Modified Tue Feb 5 20:16:58 2008 UTC (9 years, 7 months ago) by bensch
ENH: new algorithm from nicholas included, works.

Revision 5704  Directory Listing
Modified Tue Feb 5 20:03:40 2008 UTC (9 years, 7 months ago) by bensch
BUG: Compiles again after removing vtk elements from the library. 
Also removed static New() functions

Revision 5703  Directory Listing
Modified Tue Feb 5 19:16:31 2008 UTC (9 years, 7 months ago) by bensch
ENH: in the middle of the porting

Revision 5698  Directory Listing
Modified Tue Feb 5 15:58:13 2008 UTC (9 years, 7 months ago) by bensch
ENH: renamed the vtkCuda classes to Cudapp

Revision 5695  Directory Listing
Modified Tue Feb 5 01:37:04 2008 UTC (9 years, 7 months ago) by pohl
ENH: took automatic load of mrml file out

Revision 5694  Directory Listing
Modified Tue Feb 5 01:32:36 2008 UTC (9 years, 7 months ago) by pohl
ENH: Status after AHM

Revision 5693  Directory Listing
Modified Tue Feb 5 01:31:28 2008 UTC (9 years, 7 months ago) by pohl
ENH: Status after AHM

Revision 5692  Directory Listing
Modified Tue Feb 5 00:39:56 2008 UTC (9 years, 7 months ago) by pohl
ENH: Added  VOLUMERENDERINGMODULE

Revision 5687  Directory Listing
Modified Mon Feb 4 21:58:00 2008 UTC (9 years, 7 months ago) by bensch
ENH: Using the Integration Method again

Revision 5686  Directory Listing
Modified Mon Feb 4 21:47:10 2008 UTC (9 years, 7 months ago) by bensch
ENH: Much better rendering. but not really working still!

Revision 5685  Directory Listing
Modified Mon Feb 4 20:10:53 2008 UTC (9 years, 7 months ago) by bensch
ENH: Updated to new algorithm. It is really faulty, currently

Revision 5681  Directory Listing
Modified Mon Feb 4 17:05:20 2008 UTC (9 years, 7 months ago) by bensch
BUG: Copy from this instead of other pointer fixed.

Revision 5663  Directory Listing
Modified Thu Jan 31 15:33:34 2008 UTC (9 years, 7 months ago) by pieper
ENH: merge current trunk into branch

Revision 5662  Directory Listing
Modified Thu Jan 31 15:21:36 2008 UTC (9 years, 7 months ago) by pieper
ENH: better management of log files

Revision 5659  Directory Listing
Modified Thu Jan 31 14:31:49 2008 UTC (9 years, 7 months ago) by pieper
ENH: new log file handling methods

Revision 5655  Directory Listing
Modified Wed Jan 30 19:15:10 2008 UTC (9 years, 7 months ago) by tokuda
BUG: corrected miss-spelling.


Revision 5654  Directory Listing
Modified Wed Jan 30 18:33:32 2008 UTC (9 years, 7 months ago) by pieper
ENH: integrat async event processing into slicer application and migrate almost all MRML transactions to use EventBroker

Revision 5646  Directory Listing
Modified Tue Jan 29 17:20:38 2008 UTC (9 years, 7 months ago) by pieper
BUG: restore missing callback function and add documentation

Revision 5644  Directory Listing
Modified Tue Jan 29 15:03:47 2008 UTC (9 years, 7 months ago) by pieper
BUG: restore missing callback function and add documentation

Revision 5643  Directory Listing
Modified Tue Jan 29 14:24:46 2008 UTC (9 years, 7 months ago) by pieper
ENH: clean up initialization and unused command callback infrastructure

Revision 5642  Directory Listing
Modified Tue Jan 29 13:39:26 2008 UTC (9 years, 8 months ago) by pieper
ENH: a few nodes converted from AddObserver to AddObservation

Revision 5641  Directory Listing
Modified Tue Jan 29 13:38:56 2008 UTC (9 years, 8 months ago) by pieper
BUG: remove observer from correct object (subject not observer)

Revision 5636  Directory Listing
Modified Mon Jan 28 21:58:52 2008 UTC (9 years, 8 months ago) by pieper
BUG: fix leak in broker

Revision 5635  Directory Listing
Modified Mon Jan 28 21:49:23 2008 UTC (9 years, 8 months ago) by pieper
BUG: fixes for convenience methods

Revision 5634  Directory Listing
Modified Mon Jan 28 21:37:17 2008 UTC (9 years, 8 months ago) by pieper
ENH: more broker methods and some testing

Revision 5633  Directory Listing
Modified Mon Jan 28 18:41:14 2008 UTC (9 years, 8 months ago) by pieper
ENH: remove copy of trunk that was added accidentally

Revision 5631  Directory Listing
Modified Mon Jan 28 17:17:02 2008 UTC (9 years, 8 months ago) by hayes
ENH: test branch for integrating EventBroker into Slicer3.

Revision 5627  Directory Listing
Modified Mon Jan 28 16:16:25 2008 UTC (9 years, 8 months ago) by pieper
ENH: remove test branch

Revision 5626  Directory Listing
Modified Mon Jan 28 16:15:21 2008 UTC (9 years, 8 months ago) by pieper
ENH: test branch for integrating EventBroker for slicer3

Revision 5625  Directory Listing
Modified Mon Jan 28 16:12:34 2008 UTC (9 years, 8 months ago) by pieper
ENH: remove dead directory

Revision 5624  Directory Listing
Modified Mon Jan 28 16:03:55 2008 UTC (9 years, 8 months ago) by zack.galbreath
ENH: removing test branch

Revision 5623  Directory Listing
Modified Mon Jan 28 16:03:06 2008 UTC (9 years, 8 months ago) by zack.galbreath
ENH: test branch for integrating EventBroker for slicer3

Revision 5622  Directory Listing
Modified Mon Jan 28 15:56:18 2008 UTC (9 years, 8 months ago) by zack.galbreath
ENH: testing branching

Revision 5613  Directory Listing
Modified Fri Jan 25 22:14:58 2008 UTC (9 years, 8 months ago) by bensch
ENH: Written a simple test. fails, this is BAD

Revision 5612  Directory Listing
Modified Fri Jan 25 22:06:13 2008 UTC (9 years, 8 months ago) by bensch
ENH: Testing works as inteded

Revision 5611  Directory Listing
Modified Fri Jan 25 21:58:42 2008 UTC (9 years, 8 months ago) by bensch
ENH: added testing facilities for the Memory Management

Revision 5610  Directory Listing
Modified Fri Jan 25 21:46:38 2008 UTC (9 years, 8 months ago) by bensch
ENH: enhanced the Memory Management system. There should be no more fails and less redundancy now

Revision 5605  Directory Listing
Modified Fri Jan 25 20:07:18 2008 UTC (9 years, 8 months ago) by bensch
ENH: Copy based on MTimes

Revision 5598  Directory Listing
Modified Fri Jan 25 17:41:39 2008 UTC (9 years, 8 months ago) by bensch
ENH: moved CudaMemory to CudaDeviceMemory leaving CudaMemory to be a simple abstract class for linear memory

Revision 5594  Directory Listing
Modified Fri Jan 25 14:51:06 2008 UTC (9 years, 8 months ago) by bensch
ENH: Tried to implement some Classes that handle the CudaImageData

Revision 5592  Directory Listing
Modified Thu Jan 24 22:59:24 2008 UTC (9 years, 8 months ago) by tokuda
ENH: Added byte order conversion for 64 bit integers.

Revision 5591  Directory Listing
Modified Thu Jan 24 22:18:35 2008 UTC (9 years, 8 months ago) by bensch
ENH: moved some modules around

Revision 5590  Directory Listing
Modified Thu Jan 24 22:07:47 2008 UTC (9 years, 8 months ago) by bensch
ENH: Sync

Revision 5589  Directory Listing
Modified Thu Jan 24 21:02:49 2008 UTC (9 years, 8 months ago) by tokuda
ENH: OpenIGTLink protocol has been partially implemented.


Revision 5588  Directory Listing
Modified Thu Jan 24 19:22:13 2008 UTC (9 years, 8 months ago) by bensch
BUG: fixed the min/max bug in the algorithm

Revision 5587  Directory Listing
Modified Wed Jan 23 23:16:21 2008 UTC (9 years, 8 months ago) by bensch
ENH: Tested some stuff with different input data... nothing really works

Revision 5586  Directory Listing
Modified Wed Jan 23 22:52:45 2008 UTC (9 years, 8 months ago) by bensch
BUG: removed the ridiculous update function...

Revision 5585  Directory Listing
Modified Wed Jan 23 22:46:09 2008 UTC (9 years, 8 months ago) by bensch
ENH: The correct conversion Table is setup

Revision 5582  Directory Listing
Modified Wed Jan 23 20:32:54 2008 UTC (9 years, 8 months ago) by hayes
BUG: Changed default checkout to TransformIO branch

Revision 5575  Directory Listing
Modified Wed Jan 23 04:37:30 2008 UTC (9 years, 8 months ago) by tgl
ENH: volume rendering module is dynamically loaded, need put back static loading if LOADABLEMODULES_DEBUG is defined

Revision 5573  Directory Listing
Modified Tue Jan 22 22:27:42 2008 UTC (9 years, 8 months ago) by bensch
ENH: VolumePropertyWidget added to the example application

Revision 5572  Directory Listing
Modified Tue Jan 22 21:41:37 2008 UTC (9 years, 8 months ago) by bensch
ENH: Cuda is initialized in the right way and the example now uses the better KWWidget backend, thanks to andi's and steve's input.

Revision 5570  Directory Listing
Modified Tue Jan 22 20:31:28 2008 UTC (9 years, 8 months ago) by bensch
ENH: Better Example

Revision 5569  Directory Listing
Modified Tue Jan 22 19:50:15 2008 UTC (9 years, 8 months ago) by bensch
ENH: a better Example.

Revision 5568  Directory Listing
Modified Tue Jan 22 18:50:15 2008 UTC (9 years, 8 months ago) by bensch
ENH: factory produces CudaMapper

Revision 5566  Directory Listing
Modified Tue Jan 22 16:31:23 2008 UTC (9 years, 8 months ago) by bensch
ENH: Added new class vtkCudaVolumeProperty that is used to set the Volume Properties. Th update function will update the input ports to cuda memory banks

Revision 5565  Directory Listing
Modified Tue Jan 22 16:18:29 2008 UTC (9 years, 8 months ago) by bensch
ENH: Removed color and added new Example code

Revision 5564  Directory Listing
Modified Tue Jan 22 15:38:37 2008 UTC (9 years, 8 months ago) by bensch
ENH: removed unused files

Revision 5558  Directory Listing
Modified Mon Jan 21 18:45:20 2008 UTC (9 years, 8 months ago) by hayes
ENH: Setting default SLICER_TAG to branch

Revision 5551  Directory Listing
Modified Sat Jan 19 20:21:58 2008 UTC (9 years, 8 months ago) by bensch
ENH: Tried to integrat the alpha part of the transfer function.

Revision 5548  Directory Listing
Modified Fri Jan 18 23:21:24 2008 UTC (9 years, 8 months ago) by bensch
ENH: Try to integrate the transfer function NR.1 looks much better already.

Revision 5546  Directory Listing
Modified Fri Jan 18 22:31:21 2008 UTC (9 years, 8 months ago) by bensch
ENH: Added New Cuda Transfer function

Revision 5545  Directory Listing
Modified Fri Jan 18 22:15:53 2008 UTC (9 years, 8 months ago) by bensch
ENH: just some teplatization to show the use of templates in VTK style

Revision 5543  Directory Listing
Modified Fri Jan 18 20:59:18 2008 UTC (9 years, 8 months ago) by bensch
ENH: Added Threshold values

Revision 5542  Directory Listing
Modified Fri Jan 18 20:45:18 2008 UTC (9 years, 8 months ago) by millerjv
ENH: Checkin of some initial nonlinear transformations to share with Xiaodong.

Revision 5541  Directory Listing
Modified Fri Jan 18 18:02:23 2008 UTC (9 years, 8 months ago) by bensch
BUG: map to 0.0 not 1.0 when val is smaller than 0.0

Revision 5540  Directory Listing
Modified Fri Jan 18 17:57:06 2008 UTC (9 years, 8 months ago) by bensch
BUG: Removed the transfer Function again. it was wrong.

Revision 5539  Directory Listing
Modified Fri Jan 18 17:46:21 2008 UTC (9 years, 8 months ago) by bensch
ENH: correct Histograms

Revision 5538  Directory Listing
Modified Fri Jan 18 17:04:10 2008 UTC (9 years, 8 months ago) by bensch
ENH: 4D rendering HACK, and added Histogram to the Widget

Revision 5537  Directory Listing
Modified Fri Jan 18 06:25:17 2008 UTC (9 years, 8 months ago) by pohl
ENH: Added Clone Function written by Steve

Revision 5536  Directory Listing
Modified Fri Jan 18 06:25:09 2008 UTC (9 years, 8 months ago) by pohl
ENH: Added Clone Function written by Steve

Revision 5535  Directory Listing
Modified Fri Jan 18 01:16:01 2008 UTC (9 years, 8 months ago) by bensch
BUG: Upside Down Bug Fix of the Texture

Revision 5534  Directory Listing