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Revision 12351  Directory Listing
Modified Mon Mar 15 20:29:29 2010 UTC (7 years, 6 months ago) by fedorov
BUG: fix Volumes logic dependency 

Revision 12106  Directory Listing
Modified Thu Feb 11 16:20:31 2010 UTC (7 years, 7 months ago) by fedorov
ENH: improving the intensity metric

Revision 11969  Directory Listing
Modified Thu Feb 4 16:42:43 2010 UTC (7 years, 7 months ago) by fedorov
BUG: missing functions in logic

Revision 11968  Directory Listing
Modified Thu Feb 4 16:37:10 2010 UTC (7 years, 7 months ago) by fedorov
ENH: sync

Revision 11966  Directory Listing
Modified Thu Feb 4 16:24:34 2010 UTC (7 years, 7 months ago) by fedorov
Copied from: trunk/Modules/ChangeTracker revision 11965
ENH: moving development work out from the trunk

Revision 11950  Directory Listing
Modified Wed Feb 3 17:49:24 2010 UTC (7 years, 7 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
STYLE: trying to fix warnings on win

Revision 11948  Directory Listing
Modified Wed Feb 3 16:56:10 2010 UTC (7 years, 7 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: revert accidental commit

Revision 11947  Directory Listing
Modified Wed Feb 3 16:55:21 2010 UTC (7 years, 7 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: incorrect input image

Revision 11843  Directory Listing
Modified Thu Jan 28 22:05:16 2010 UTC (7 years, 7 months ago) by jcfr
Original Path: trunk/Modules/ChangeTracker
COMP: Fix various compilation warnings (unused, ...)

Note: size_t is an unsigned int, it means there is no need to check if
it's value is negative.

Revision 11823  Directory Listing
Modified Thu Jan 28 09:09:23 2010 UTC (7 years, 7 months ago) by jcfr
Original Path: trunk/Modules/ChangeTracker
COMP: Fix various compilation warning (hidden virtual method, unused variable, ...)

Note1: Also moved vtkSlicerApplication.h up in the header include order
otherwise, when compiled with QT, it outputs that message:

#error qdatastream.h must be included before any header file that defines Status

Note2:
To fix such warning,
"base class‘base_class’should be explicitly initialized in the copy constructor"

the compy ctor and the '=' operator has been set as private member

Revision 11815  Directory Listing
Modified Wed Jan 27 19:28:07 2010 UTC (7 years, 7 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: enforce connectivity of the change label with the tumor segmentation
border

Revision 11814  Directory Listing
Modified Wed Jan 27 19:12:06 2010 UTC (7 years, 7 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: itk2vtk adapters; currently duplicated in EMSegmenter and BiasCorrection
module. TODO: reconcile these to use one instance from Libs/vtkITK (?)

Revision 11779  Directory Listing
Modified Mon Jan 25 23:03:45 2010 UTC (7 years, 7 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: move work on improved command line application to sandbox

Revision 11649  Directory Listing
Modified Fri Jan 15 18:06:40 2010 UTC (7 years, 8 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: added bspline interpolator for the warper

Revision 11524  Directory Listing
Modified Tue Jan 5 06:42:22 2010 UTC (7 years, 8 months ago) by ibanez
Original Path: trunk/Modules/ChangeTracker
BUG: Fixing instances of incorrect setting of the this->SingletonTag member variable.
     String member variables shouldn't be assigned from statically allocated strings.

Revision 11508  Directory Listing
Modified Mon Jan 4 19:10:35 2010 UTC (7 years, 8 months ago) by ibanez
Original Path: trunk/Modules/ChangeTracker
ENH: Removing .NoDartCoverage files and replacing them with the
     CTEST_CUSTOM_COVERAGE_EXCLUDE variable in the CTestCustom.cmake.in file.


Revision 11362  Directory Listing
Modified Mon Dec 21 21:14:08 2009 UTC (7 years, 9 months ago) by ibanez
Original Path: trunk/Modules/ChangeTracker
ENH: Adding .NoDartCoverage files inside the Testing subdirectories
     in order to exclude them from the computation of code coverage.

Revision 11226  Directory Listing
Modified Tue Dec 8 23:34:28 2009 UTC (7 years, 9 months ago) by jcfr
Original Path: trunk/Modules/ChangeTracker
ENH: In CMakeLists.txt, change deprecated SUBDIRS command into ADD_SUBDIRECTORY

See http://cmake.org/cmake/help/cmake-2-8-docs.html#command:subdirs

when subdirs command was taking a list of directory, change it
using the following pattern:

Before:
subdirs(sagarmatha kumbhu eiger)

After:
SET(dirs
  sagarmatha
  kumbhu
  eiger
  )
FOREACH(dir ${dirs})
  ADD_SUBDIRECTORY(${dir})
ENDFOREACH(dir)

Revision 11209  Directory Listing
Modified Tue Dec 8 04:15:18 2009 UTC (7 years, 9 months ago) by jcfr
Original Path: trunk/Modules/ChangeTracker
ENH: Update CMakeLists.txt - CMake 2.6 is now required

The following line have been added:

CMAKE_MINIMUM_REQUIRED(VERSION 2.6)
IF(COMMAND CMAKE_POLICY)
  CMAKE_POLICY(SET CMP0003 NEW)
ENDIF(COMMAND CMAKE_POLICY)
MARK_AS_ADVANCED(CMAKE_BACKWARDS_COMPATIBILITY)

Revision 10821  Directory Listing
Modified Sat Oct 31 00:03:41 2009 UTC (7 years, 10 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: incorrect initialization of the ras2ijk matrix for segmented image

Revision 10804  Directory Listing
Modified Fri Oct 30 14:38:02 2009 UTC (7 years, 10 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: remove ChangeTracker tests. They are not testing the functionality used
by GUI. Testing needs to be updated to reflect the updated processing
workflow.

Revision 10803  Directory Listing
Modified Fri Oct 30 14:18:49 2009 UTC (7 years, 10 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: use cubic interpolation instead of linear

Revision 10795  Directory Listing
Modified Thu Oct 29 22:36:10 2009 UTC (7 years, 10 months ago) by barre
Original Path: trunk/Modules/ChangeTracker
ENH: support for new cameras and new views. Port from Slicer 3.4 branch. As mentioned on the mailing list, apologies for instabilities while these core changes are further tested. Fiducials do not seem to follow camera for example, this will be fixed. Send bugs to sebastien.barre@kitware.com; Thank you.

Revision 10779  Directory Listing
Modified Wed Oct 28 22:07:30 2009 UTC (7 years, 10 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: fix windows compile issues, make .xml consistent with the new way of
defining roi

Revision 10777  Directory Listing
Modified Wed Oct 28 20:53:47 2009 UTC (7 years, 10 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: demons registration discards orientation, so unless the input is axial,
the results of deformable analysis are garbage. Fix this in the ROI extraction
routine to enforce axial orientation.

Revision 10771  Directory Listing
Modified Wed Oct 28 16:49:06 2009 UTC (7 years, 10 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: missed resample factor

Revision 10770  Directory Listing
Modified Wed Oct 28 16:32:57 2009 UTC (7 years, 10 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: remove non-portable fmin(), ENH: roi extraction debugging code, just in case

Revision 10769  Directory Listing
Modified Wed Oct 28 16:25:58 2009 UTC (7 years, 10 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: results in agreement with GUI

Revision 10768  Directory Listing
Modified Wed Oct 28 15:27:45 2009 UTC (7 years, 10 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: don't try to compile in-progress CLI

Revision 10761  Directory Listing
Modified Tue Oct 27 04:37:33 2009 UTC (7 years, 10 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: reworked roi resampling procedure, now with just one resampling.
Eliminated inconsistency of roi extraction between gui and cli.

Revision 10753  Directory Listing
Modified Mon Oct 26 21:17:10 2009 UTC (7 years, 10 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
STYLE: unused variable warning

Revision 10751  Directory Listing
Modified Mon Oct 26 20:41:38 2009 UTC (7 years, 10 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
STYLE: get rid of warnings that show up with warn_unused_result

Revision 10684  Directory Listing
Modified Mon Oct 19 13:25:31 2009 UTC (7 years, 11 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
STYLE: warnings

Revision 10681  Directory Listing
Modified Sun Oct 18 03:21:18 2009 UTC (7 years, 11 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: incorrect thresholding for histogram calculation; uninitialized
resampling mode in CLI

Revision 10678  Directory Listing
Modified Fri Oct 16 21:48:52 2009 UTC (7 years, 11 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: whole volume used to compute histogram instead of ROI; GUI/CLI results
still not consistent

Revision 10667  Directory Listing
Modified Fri Oct 16 14:40:30 2009 UTC (7 years, 11 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
STYLE: remove printouts

Revision 10653  Directory Listing
Modified Wed Oct 14 22:15:45 2009 UTC (7 years, 11 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: both metrics working, need to confirm same as GUI results, need to fix
memory leaks

Revision 10646  Directory Listing
Modified Wed Oct 14 20:28:32 2009 UTC (7 years, 11 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: incorrect orientation matrix during image saving

Revision 10645  Directory Listing
Modified Wed Oct 14 19:52:17 2009 UTC (7 years, 11 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: DefineSuperSampleSize must be independent of the MRML node

Revision 10643  Directory Listing
Modified Wed Oct 14 18:20:11 2009 UTC (7 years, 11 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: filling in new functionality, no backwards compatibility

Revision 10640  Directory Listing
Modified Wed Oct 14 17:10:04 2009 UTC (7 years, 11 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: initial commit for the command line module to reflect the updated
workflow; this one is just a copy of the original CL module

Revision 10639  Directory Listing
Modified Wed Oct 14 17:04:17 2009 UTC (7 years, 11 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: incorrect commit

Revision 10638  Directory Listing
Modified Wed Oct 14 17:00:45 2009 UTC (7 years, 11 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: command line module to reflect the updated workflow

Revision 10528  Directory Listing
Modified Fri Sep 25 14:59:03 2009 UTC (7 years, 11 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
STYLE: adjusted name of the segmentated volume

Revision 10527  Directory Listing
Modified Thu Sep 24 22:13:20 2009 UTC (7 years, 11 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: fix the problem with non-invertible inverse field at the expense of
double evaluation of demons. The jacobian metric should now be more
consistent with the segmentation metric.

Revision 10517  Directory Listing
Modified Tue Sep 22 23:42:08 2009 UTC (7 years, 11 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: incorrect opacity function for volume rendering; still not functioning as
expected. Workaround: select segmentation manually in step node selector, then
select "None".

Revision 10516  Directory Listing
Modified Tue Sep 22 16:57:25 2009 UTC (7 years, 11 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: save jacobian image

Revision 10508  Directory Listing
Modified Mon Sep 21 16:58:48 2009 UTC (8 years ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: island removal for externally defined volumes

Revision 10507  Directory Listing
Modified Mon Sep 21 16:30:20 2009 UTC (8 years ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: use nn interpolator for deformable metric

Revision 10457  Directory Listing
Modified Fri Sep 11 14:17:54 2009 UTC (8 years ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: crosshair mode initialized

Revision 10455  Directory Listing
Modified Thu Sep 10 19:19:03 2009 UTC (8 years ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
STYLE: Connect() returns non-0 even if there's no error! Check error
code instead of return value.

Revision 10454  Directory Listing
Modified Thu Sep 10 19:04:31 2009 UTC (8 years ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: changes to GUI to improve usability (Ron's suggestion)

Revision 10444  Directory Listing
Modified Thu Sep 10 18:11:49 2009 UTC (8 years ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
STYLE: get rid of warnings

Revision 10443  Directory Listing
Modified Thu Sep 10 18:11:33 2009 UTC (8 years ago) by pieper
Original Path: trunk/Modules/ChangeTracker
COMP: apply patches from Attila Nagy for Solaris builds

Revision 10430  Directory Listing
Modified Wed Sep 9 17:50:11 2009 UTC (8 years ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: cleanup of ROI selection to avoid inconsistencies due to
conflicting updates, and to improve performance

Revision 10411  Directory Listing
Modified Thu Sep 3 15:09:13 2009 UTC (8 years ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
STYLE: remove debugging output

Revision 10393  Directory Listing
Modified Fri Aug 28 23:40:26 2009 UTC (8 years ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: improving performance of ROI selection step

Revision 10392  Directory Listing
Modified Fri Aug 28 22:50:02 2009 UTC (8 years ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: improve performance -- PropagateVolumeSelection is a very expensive way
to set up composite nodes!

Revision 10384  Directory Listing
Modified Fri Aug 28 14:39:49 2009 UTC (8 years ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: incorrect reference image for scan2 resampling

Revision 10381  Directory Listing
Modified Thu Aug 27 22:33:07 2009 UTC (8 years ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: somehow, resampling results end up under transform

Revision 10308  Directory Listing
Modified Wed Aug 19 16:31:07 2009 UTC (8 years, 1 month ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: added error handling for remote scene downloading

Revision 10307  Directory Listing
Modified Wed Aug 19 16:14:34 2009 UTC (8 years, 1 month ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: added the functionality to load tutorial data with one button click!
(Steve gets credit for this great idea!)

Revision 10267  Directory Listing
Modified Sun Aug 16 16:14:50 2009 UTC (8 years, 1 month ago) by domibel
Original Path: trunk/Modules/ChangeTracker
ENH: Version numbering for shared libraries

Revision 10261  Directory Listing
Modified Fri Aug 14 20:42:02 2009 UTC (8 years, 1 month ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: last major missing piece in logic for handling externally defined segmentation; hide volume rendering when leaving the module

Revision 10252  Directory Listing
Modified Fri Aug 14 16:59:48 2009 UTC (8 years, 1 month ago) by pieper
Original Path: trunk/Modules/ChangeTracker
BUG: avoid crash on exit

Revision 10248  Directory Listing
Modified Fri Aug 14 16:07:52 2009 UTC (8 years, 1 month ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: hopefully, most of the logic to handle externally defined segmentations

Revision 10232  Directory Listing
Modified Wed Aug 12 21:20:46 2009 UTC (8 years, 1 month ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: gui+mrml to handle externally defined segmentation

Revision 10218  Directory Listing
Modified Tue Aug 11 20:51:35 2009 UTC (8 years, 1 month ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: wrong choice for the default ResampleChoice value

Revision 10217  Directory Listing
Modified Tue Aug 11 20:38:00 2009 UTC (8 years, 1 month ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: changes in the procedure for determining the voxel size for supersampled
volume were not propagated to the command line module

Revision 10178  Directory Listing
Modified Thu Aug 6 16:37:44 2009 UTC (8 years, 1 month ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: removing fmin(), since it may not be compatible with win

Revision 10177  Directory Listing
Modified Thu Aug 6 15:46:15 2009 UTC (8 years, 1 month ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: files left out of the previous commit by mistake

Revision 10176  Directory Listing
Modified Thu Aug 6 15:01:04 2009 UTC (8 years, 1 month ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: gui+logic+mrml to handle ROI resampling options
BUG: removed assert to fix win compile problem

Revision 10175  Directory Listing
Modified Wed Aug 5 22:36:27 2009 UTC (8 years, 1 month ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: functionality to disable ROI registration

Revision 10174  Directory Listing
Modified Wed Aug 5 22:12:35 2009 UTC (8 years, 1 month ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: functionality to handle externally specified global transform and disabled
global registration

Revision 10171  Directory Listing
Modified Wed Aug 5 14:03:27 2009 UTC (8 years, 1 month ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: GUI/MRML functionality to support registration choices

Revision 10169  Directory Listing
Modified Tue Aug 4 20:57:03 2009 UTC (8 years, 1 month ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: adding the flexibility to disable/improve the automatic registration
step

Revision 9562  Directory Listing
Modified Tue May 19 21:25:56 2009 UTC (8 years, 4 months ago) by barre
Original Path: trunk/Modules/ChangeTracker
ENH: fix linking issue in ChangeTrackerTest

Revision 9540  Directory Listing
Modified Mon May 18 22:31:00 2009 UTC (8 years, 4 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: install logo image data

Revision 9469  Directory Listing
Modified Tue May 12 20:29:35 2009 UTC (8 years, 4 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
STYLE: cleanup of GUI and slice interaction

Revision 9414  Directory Listing
Modified Wed May 6 19:43:09 2009 UTC (8 years, 4 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: ROI sampling increment could be 0, causing indefinite loop

Revision 9411  Directory Listing
Modified Wed May 6 18:50:58 2009 UTC (8 years, 4 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: ROI widget resolution is now adjusted based on the image
dimensions

Revision 9390  Directory Listing
Modified Fri May 1 21:19:41 2009 UTC (8 years, 4 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: commiting changes to sync with 3-4 branch fixes

Revision 9326  Directory Listing
Modified Mon Apr 27 15:13:51 2009 UTC (8 years, 4 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: interation parameter setup bogus

Revision 9304  Directory Listing
Modified Thu Apr 23 23:08:02 2009 UTC (8 years, 4 months ago) by pieper
Original Path: trunk/Modules/ChangeTracker
BUG: fix out of date license files

Revision 9159  Directory Listing
Modified Fri Apr 10 22:00:14 2009 UTC (8 years, 5 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: 3d view refocus on ROI updates in slice viewers

Revision 9151  Directory Listing
Modified Fri Apr 10 20:30:24 2009 UTC (8 years, 5 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: added image cast to subtract routine

Revision 9086  Directory Listing
Modified Tue Apr 7 12:27:30 2009 UTC (8 years, 5 months ago) by pieper
Original Path: trunk/Modules/ChangeTracker
COMP: adapt to change in slice controller configuration (scale is now indpenedent of entry)

Revision 9019  Directory Listing
Modified Wed Apr 1 15:48:09 2009 UTC (8 years, 5 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: fixed incorrect threshold calculation for volume rendering

Revision 9016  Directory Listing
Modified Wed Apr 1 14:27:49 2009 UTC (8 years, 5 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: fix the limitation of the input images to have VTK_SHORT scalar
type

Revision 9015  Directory Listing
Modified Tue Mar 31 23:09:58 2009 UTC (8 years, 5 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: fixed drift in IJK-RAS conversion for ROI selection

Revision 9004  Directory Listing
Modified Sun Mar 29 20:04:35 2009 UTC (8 years, 5 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: add a check to prevent layout reset to FourUp on Slicer startup

Revision 8899  Directory Listing
Modified Tue Mar 17 22:47:38 2009 UTC (8 years, 6 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: fixed file io to have deformable metric working

Revision 8898  Directory Listing
Modified Tue Mar 17 22:33:27 2009 UTC (8 years, 6 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: simplified

Revision 8895  Directory Listing
Modified Tue Mar 17 15:55:29 2009 UTC (8 years, 6 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: install command line in Slicer/bin

Revision 8880  Directory Listing
Modified Sun Mar 15 19:34:32 2009 UTC (8 years, 6 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: namings for intermediate and analysis results revisited

Revision 8877  Directory Listing
Modified Sat Mar 14 17:54:48 2009 UTC (8 years, 6 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: prevent slice offset reset when going to the ROI selection step

Revision 8869  Directory Listing
Modified Wed Mar 11 19:27:45 2009 UTC (8 years, 6 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: fixed execution with non-ITK registration

Revision 8862  Directory Listing
Modified Tue Mar 10 22:01:14 2009 UTC (8 years, 6 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: use label layer for displaying segmentation and analysis results

Revision 8848  Directory Listing
Modified Sun Mar 8 00:36:51 2009 UTC (8 years, 6 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: module output redirection back to normal

Revision 8838  Directory Listing
Modified Wed Mar 4 22:33:07 2009 UTC (8 years, 6 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: removed unnecessary dependency on EMSegmenter

Revision 8822  Directory Listing
Modified Mon Mar 2 21:00:37 2009 UTC (8 years, 6 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: extra check of the image data

Revision 8821  Directory Listing
Modified Mon Mar 2 20:52:02 2009 UTC (8 years, 6 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: disabling output redirect trying to catch bug #440

Revision 8768  Directory Listing
Modified Fri Feb 27 18:16:49 2009 UTC (8 years, 6 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: fixed uninitialized pointer and added extra check; should take care of bug 440

Revision 8759  Directory Listing
Modified Thu Feb 26 22:21:26 2009 UTC (8 years, 6 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: trying to fix the mac crash

Revision 8747  Directory Listing
Modified Wed Feb 25 20:16:28 2009 UTC (8 years, 6 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
STYLE: ChangeTracker is now in Wizards category sub-menu

Revision 8741  Directory Listing
Modified Tue Feb 24 16:46:59 2009 UTC (8 years, 6 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: targets related to deformable metric were not installed correctly

Revision 8740  Directory Listing
Modified Tue Feb 24 15:24:06 2009 UTC (8 years, 6 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: memory leak

Revision 8730  Directory Listing
Modified Mon Feb 23 16:16:00 2009 UTC (8 years, 6 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: memory leaks

Revision 8729  Directory Listing
Modified Mon Feb 23 15:49:07 2009 UTC (8 years, 6 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: unnecessary Delete() 

Revision 8728  Directory Listing
Modified Mon Feb 23 14:56:14 2009 UTC (8 years, 6 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: revert to r8701 

Revision 8724  Directory Listing
Modified Sun Feb 22 00:22:24 2009 UTC (8 years, 6 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: memory leak only; previous changes are troublesome

Revision 8723  Directory Listing
Modified Sat Feb 21 23:51:25 2009 UTC (8 years, 6 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: fixing memory leaks ENH: added transforms to MRML node

Revision 8701  Directory Listing
Modified Thu Feb 19 14:32:35 2009 UTC (8 years, 7 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: added checks for Volumes module (dependency) and error reporting

Revision 8698  Directory Listing
Modified Thu Feb 19 04:39:14 2009 UTC (8 years, 7 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
STYLE: removed dead section of code

Revision 8687  Directory Listing
Modified Wed Feb 18 16:50:20 2009 UTC (8 years, 7 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: do link slices

Revision 8684  Directory Listing
Modified Wed Feb 18 16:19:17 2009 UTC (8 years, 7 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
STYLE: fixed wizard step descriptions to be uniform

Revision 8682  Directory Listing
Modified Wed Feb 18 14:33:42 2009 UTC (8 years, 7 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: (hopefully, BUG fix) rewrote command line module invocation
to avoid GUI construction. This required changes to the way compareview
is initialized.

Revision 8640  Directory Listing
Modified Sat Feb 14 19:46:38 2009 UTC (8 years, 7 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: bins are not plugins

Revision 8639  Directory Listing
Modified Sat Feb 14 18:25:05 2009 UTC (8 years, 7 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: null pointer check (relevant on scene close)

Revision 8638  Directory Listing
Modified Fri Feb 13 23:32:36 2009 UTC (8 years, 7 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: apparently, rendering now has to be explicitly requested; 
this was not the case before

Revision 8622  Directory Listing
Modified Wed Feb 11 20:39:05 2009 UTC (8 years, 7 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: changing MRML node name was probably not a good idea -- 
keep the original naming for backward compatibility

Revision 8619  Directory Listing
Modified Wed Feb 11 14:08:53 2009 UTC (8 years, 7 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: corrected MRML node tag

Revision 8617  Directory Listing
Modified Tue Feb 10 22:46:52 2009 UTC (8 years, 7 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: change to use band-pass filter for rendering -- more consistent
results

Revision 8614  Directory Listing
Modified Tue Feb 10 00:59:28 2009 UTC (8 years, 7 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: fixed initialization issue of the ROI widget

Revision 8613  Directory Listing
Modified Tue Feb 10 00:22:13 2009 UTC (8 years, 7 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: updated documentation pointer

Revision 8612  Directory Listing
Modified Mon Feb 9 23:54:51 2009 UTC (8 years, 7 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
STYLE: removed cout

Revision 8610  Directory Listing
Modified Mon Feb 9 21:51:38 2009 UTC (8 years, 7 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
STYLE: typo

Revision 8609  Directory Listing
Modified Mon Feb 9 21:48:05 2009 UTC (8 years, 7 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: set working dir to Slicer temp dir

Revision 8607  Directory Listing
Modified Mon Feb 9 20:19:26 2009 UTC (8 years, 7 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: command line module should not be installed as plugin

Revision 8597  Directory Listing
Modified Sun Feb 8 15:46:18 2009 UTC (8 years, 7 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: fixing memory leaks when exiting after global registration

Revision 8577  Directory Listing
Modified Thu Feb 5 19:51:40 2009 UTC (8 years, 7 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: setting options for full output...still

Revision 8576  Directory Listing
Modified Thu Feb 5 19:26:00 2009 UTC (8 years, 7 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: ctest is still not giving the full output!

Revision 8575  Directory Listing
Modified Thu Feb 5 19:11:33 2009 UTC (8 years, 7 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: an easy fix to eliminate memory leaks

Revision 8555  Directory Listing
Modified Wed Feb 4 23:36:50 2009 UTC (8 years, 7 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: fixed incompatible "exec date" (thanks, Steve!)

Revision 8527  Directory Listing
Modified Wed Feb 4 01:48:19 2009 UTC (8 years, 7 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: ROI selection in IJK space is included for backwards compatibility

Revision 8504  Directory Listing
Modified Tue Feb 3 14:03:47 2009 UTC (8 years, 7 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: correct initialization of range extents in ROI selection

Revision 8496  Directory Listing
Modified Mon Feb 2 16:20:59 2009 UTC (8 years, 7 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: Added CTest directive not to truncate console output. EXIT_SUCCESS
is enabled now

Revision 8494  Directory Listing
Modified Mon Feb 2 15:11:33 2009 UTC (8 years, 7 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: ignoring rigid registration error no more

Revision 8490  Directory Listing
Modified Fri Jan 30 17:34:11 2009 UTC (8 years, 7 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: fixed initialization and updates of ROI render

Revision 8489  Directory Listing
Modified Fri Jan 30 17:24:09 2009 UTC (8 years, 7 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: need to poke ROI node to reset viewer center

Revision 8487  Directory Listing
Modified Fri Jan 30 15:29:59 2009 UTC (8 years, 7 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: substituted custom ROI controls with SlicerROIDisplayWidget; 3d
viewer center of rotation is now automatically set to the center of the
ROI 3d box

Revision 8476  Directory Listing
Modified Tue Jan 27 19:15:43 2009 UTC (8 years, 7 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: incorrect test parameters

Revision 8475  Directory Listing
Modified Tue Jan 27 03:52:56 2009 UTC (8 years, 7 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: output redirection doesn't work on Windows; changed the CL module
to always fail to be able to get output on the dashboard

Revision 8472  Directory Listing
Modified Mon Jan 26 23:48:53 2009 UTC (8 years, 7 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: suppress registration progress output

Revision 8471  Directory Listing
Modified Mon Jan 26 23:25:53 2009 UTC (8 years, 7 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: fixed retrieval of Slicer3 path, didn't work on windows

Revision 8469  Directory Listing
Modified Mon Jan 26 13:29:07 2009 UTC (8 years, 7 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: removed console output

Revision 8468  Directory Listing
Modified Mon Jan 26 13:15:17 2009 UTC (8 years, 7 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
COMP: warning

Revision 8467  Directory Listing
Modified Mon Jan 26 01:04:53 2009 UTC (8 years, 7 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: added dynamic ROI volume rendering

Revision 8466  Directory Listing
Modified Sun Jan 25 18:30:27 2009 UTC (8 years, 7 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: changing main() signature to fix the Windows compilation bug
(thanks, Bill!!!)

Revision 8463  Directory Listing
Modified Sat Jan 24 04:57:54 2009 UTC (8 years, 7 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: incorrect dependency name

Revision 8462  Directory Listing
Modified Fri Jan 23 23:42:08 2009 UTC (8 years, 7 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: Added full test of the intensity-based ChangeTracker workflow

Revision 8461  Directory Listing
Modified Fri Jan 23 23:31:45 2009 UTC (8 years, 7 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: Testing for ChangeTracker

Revision 8460  Directory Listing
Modified Fri Jan 23 23:12:21 2009 UTC (8 years, 7 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: Full integration of ROI selection with scales/slice views/ROI
widget

Revision 8458  Directory Listing
Modified Fri Jan 23 22:29:09 2009 UTC (8 years, 7 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: added pulse rendering filter for analysis visualization

Revision 8457  Directory Listing
Modified Fri Jan 23 22:23:49 2009 UTC (8 years, 7 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
COMP: warning removed

Revision 8441  Directory Listing
Modified Thu Jan 22 15:17:24 2009 UTC (8 years, 7 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: no plugin installation for DiameterEstimator

Revision 8440  Directory Listing
Modified Thu Jan 22 14:58:48 2009 UTC (8 years, 7 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: corrected setting foreground opacity using CompositeSliceNode
instead of direct manipulation with FadeScale

Revision 8439  Directory Listing
Modified Thu Jan 22 01:18:10 2009 UTC (8 years, 7 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: missed initialization

Revision 8437  Directory Listing
Modified Wed Jan 21 18:50:26 2009 UTC (8 years, 7 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: foreground selection via SliceCompositeNode

Revision 8436  Directory Listing
Modified Wed Jan 21 18:42:25 2009 UTC (8 years, 7 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: fixed setting of the foreground from using GUI to
SliceCompositeNode

Revision 8433  Directory Listing
Modified Wed Jan 21 00:34:40 2009 UTC (8 years, 8 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: removed console output

Revision 8424  Directory Listing
Modified Tue Jan 20 22:42:36 2009 UTC (8 years, 8 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: fixing some warnings

Revision 8413  Directory Listing
Modified Tue Jan 20 16:23:17 2009 UTC (8 years, 8 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: more integration of ROI widget -- widget->roi binding complete;
visualization disabled, no visual changes

Revision 8412  Directory Listing
Modified Tue Jan 20 13:33:50 2009 UTC (8 years, 8 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: Added library install

Revision 8411  Directory Listing
Modified Tue Jan 20 13:31:12 2009 UTC (8 years, 8 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: missed *Lib in target definition!

Revision 8410  Directory Listing
Modified Tue Jan 20 13:15:33 2009 UTC (8 years, 8 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: added vtkCommon to hopefully fix the Mac build problem

Revision 8409  Directory Listing
Modified Mon Jan 19 22:26:16 2009 UTC (8 years, 8 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: Adding ROI widget, roi->roi widget integration done; visualization
disabled until feature complete

Revision 8406  Directory Listing
Modified Mon Jan 19 02:22:17 2009 UTC (8 years, 8 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: Adding standard testing 

Revision 8405  Directory Listing
Modified Mon Jan 19 02:19:36 2009 UTC (8 years, 8 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: Restructuring command line application to use Rigid registration
module, and be in agreement with the testing framework

Revision 8388  Directory Listing
Modified Wed Jan 14 19:07:46 2009 UTC (8 years, 8 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: Starting to add ChangeTracker tests

Revision 8378  Directory Listing
Modified Wed Jan 14 03:12:24 2009 UTC (8 years, 8 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: Volume rendering for deformable analysis was not initialized
properly for multi-color view

Revision 8369  Directory Listing
Modified Tue Jan 13 14:28:51 2009 UTC (8 years, 8 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: switching back to FourUpView when not in the analysis mode.
Increased number of columns in CompareView.

Revision 8364  Directory Listing
Modified Mon Jan 12 23:10:04 2009 UTC (8 years, 8 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: Added CompareView layout setup in the analysis step

Revision 8348  Directory Listing
Modified Sat Jan 10 22:30:26 2009 UTC (8 years, 8 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: Added color lookup for volume rendering to have the same color as 
used for label display

Revision 8347  Directory Listing
Modified Sat Jan 10 21:55:28 2009 UTC (8 years, 8 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: Added color-coding of volume rendering for tumor growth
results visualization

Revision 8218  Directory Listing
Modified Tue Dec 30 15:06:00 2008 UTC (8 years, 8 months ago) by lorensen
Original Path: trunk/Modules/ChangeTracker
COMP: warnings.

Revision 8212  Directory Listing
Modified Mon Dec 29 19:50:31 2008 UTC (8 years, 8 months ago) by lorensen
Original Path: trunk/Modules/ChangeTracker
COMP: warning, variable may be used uninitialized in this function.

Revision 8211  Directory Listing
Modified Mon Dec 29 19:09:57 2008 UTC (8 years, 8 months ago) by lorensen
Original Path: trunk/Modules/ChangeTracker
COMP: warning, uninitialized variable.

Revision 8207  Directory Listing
Modified Mon Dec 29 19:02:31 2008 UTC (8 years, 8 months ago) by lorensen
Original Path: trunk/Modules/ChangeTracker
BUG: wrong inlucde dir for Modules/Volumes

Revision 8206  Directory Listing
Modified Mon Dec 29 16:19:41 2008 UTC (8 years, 8 months ago) by lorensen
Original Path: trunk/Modules/ChangeTracker
COMP: warnings of various sorts.

Revision 8201  Directory Listing
Modified Sun Dec 28 18:47:28 2008 UTC (8 years, 8 months ago) by lorensen
Original Path: trunk/Modules/ChangeTracker
COMP: warnings, mainly about possible use of variables that have not been assigned values.

Revision 8197  Directory Listing
Modified Sat Dec 27 23:50:44 2008 UTC (8 years, 8 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: three diameters reported with the estimated mask volume

Revision 8195  Directory Listing
Modified Sat Dec 27 19:17:56 2008 UTC (8 years, 8 months ago) by lorensen
Original Path: trunk/Modules/ChangeTracker
COMP: warnings removed. STYLE: indentation.

Revision 8194  Directory Listing
Modified Sat Dec 27 19:11:27 2008 UTC (8 years, 8 months ago) by lorensen
Original Path: trunk/Modules/ChangeTracker
COMP: warnings removed.

Revision 8192  Directory Listing
Modified Sat Dec 27 16:34:01 2008 UTC (8 years, 8 months ago) by lorensen
Original Path: trunk/Modules/ChangeTracker
COMP: many warnings removed. STYLE: mainly indentation.

Revision 8190  Directory Listing
Modified Fri Dec 26 04:14:31 2008 UTC (8 years, 8 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: include dependency directory for DiameterEstimator

Revision 8189  Directory Listing
Modified Fri Dec 26 04:11:11 2008 UTC (8 years, 8 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: missing dependency for DiameterEstimator

Revision 8188  Directory Listing
Modified Wed Dec 24 21:13:13 2008 UTC (8 years, 8 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: added second diameter estimation

Revision 8180  Directory Listing
Modified Wed Dec 24 04:55:23 2008 UTC (8 years, 8 months ago) by lorensen
Original Path: trunk/Modules/ChangeTracker
BUG: CommandLineApplication subdir was listed twice.

Revision 8177  Directory Listing
Modified Tue Dec 23 04:09:29 2008 UTC (8 years, 8 months ago) by barre
Original Path: trunk/Modules/ChangeTracker
ENH: moving view/camera changes to a branch.

* 7927 (barre): remove
* 7928 (barre): remove
* 7993 (barre): remove
* 8061 (barre): remove
* 8071 (barre): remove
* 8075 (barre): remove
* 8081 (barre): remove
* 8082 (barre): remove
* 8119 (barre): remove
* 8160 (barre): remove
* 8161 (barre): remove
* 8168 (barre): remove

 Applications/GUI/Slicer3.cxx                       |   13 +-
 Base/GUI/vtkSlicerApplication.cxx                  |   16 +-
 Base/GUI/vtkSlicerApplicationGUI.cxx               |  855 +++++++-------------
 Base/GUI/vtkSlicerApplicationGUI.h                 |   96 +--
 Base/GUI/vtkSlicerCamerasGUI.cxx                   |  290 +++-----
 Base/GUI/vtkSlicerCamerasGUI.h                     |   44 +-
 Base/GUI/vtkSlicerFiducialListWidget.cxx           |   60 +--
 Base/GUI/vtkSlicerFiducialListWidget.h             |    4 -
 Base/GUI/vtkSlicerNodeSelectorWidget.cxx           |   10 +-
 Base/GUI/vtkSlicerNodeSelectorWidget.h             |    3 +-
 Base/GUI/vtkSlicerROIDisplayWidget.cxx             |    1 +
 Base/GUI/vtkSlicerROIDisplayWidget.h               |    1 +
 Base/GUI/vtkSlicerROIViewerWidget.cxx              |   15 +-
 Base/GUI/vtkSlicerViewControlGUI.cxx               |  364 ++++-----
 Base/GUI/vtkSlicerViewerWidget.cxx                 |  230 ++----
 Base/GUI/vtkSlicerViewerWidget.h                   |   16 +-
 Libs/MRML/vtkMRMLCameraNode.cxx                    |   90 +--
 Libs/MRML/vtkMRMLCameraNode.h                      |   37 +-
 Libs/MRML/vtkMRMLLayoutNode.cxx                    |    7 +-
 Libs/MRML/vtkMRMLScene.cxx                         |   21 +-
 Libs/MRML/vtkMRMLScene.h                           |    1 -
 Libs/MRML/vtkMRMLSceneSnapshotNode.cxx             |    2 -
 Libs/MRML/vtkMRMLViewNode.cxx                      |   33 +-
 Libs/MRML/vtkMRMLViewNode.h                        |   12 +-
 .../ChangeTracker/Wizard/vtkChangeTrackerStep.cxx  |    6 +-
 Modules/QdecModule/vtkQdecModuleGUI.cxx            |   13 +-
 .../VolumeRendering/vtkSlicerVRGrayscaleHelper.cxx |  225 ++----
 Modules/VolumeRendering/vtkSlicerVRHelper.cxx      |   15 +-
 Modules/VolumeRendering/vtkVolumeRenderingGUI.cxx  |   12 +-
 29 files changed, 818 insertions(+), 1674 deletions(-)

Revision 8175  Directory Listing
Modified Mon Dec 22 16:41:21 2008 UTC (8 years, 8 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: Corrected typo in the processing step title

Revision 8171  Directory Listing
Modified Wed Dec 17 21:46:42 2008 UTC (8 years, 9 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: DiameterEstimator was compiled into a wrong location

Revision 8166  Directory Listing
Modified Wed Dec 17 19:03:45 2008 UTC (8 years, 9 months ago) by pieper
Original Path: trunk/Modules/ChangeTracker
COMP: use portable function

Revision 8165  Directory Listing
Modified Wed Dec 17 14:13:33 2008 UTC (8 years, 9 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: Added tumor diameter estimation tool. Just a separate binary for
now, to do testing quicker.

Revision 8148  Directory Listing
Modified Mon Dec 15 20:26:39 2008 UTC (8 years, 9 months ago) by naucoin
Original Path: trunk/Modules/ChangeTracker
ENH: implement NewObservableEvents, added null pointer check

Revision 8146  Directory Listing
Modified Mon Dec 15 13:32:38 2008 UTC (8 years, 9 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: Updated ack tab with BSF logo

Revision 8139  Directory Listing
Modified Sun Dec 14 01:09:36 2008 UTC (8 years, 9 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: Substituted "Linear registration" with "Rigid registration" for
rigid alignment. The first one fails on the same dataset it worked
before. Need to investigate.

Revision 8138  Directory Listing
Modified Sun Dec 14 01:08:21 2008 UTC (8 years, 9 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: added help and acks info

Revision 8075  Directory Listing
Modified Mon Dec 8 10:01:17 2008 UTC (8 years, 9 months ago) by barre
Original Path: trunk/Modules/ChangeTracker
ENH: second stab at custom views

Revision 8056  Directory Listing
Modified Fri Dec 5 15:19:26 2008 UTC (8 years, 9 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: ROI step description not completely visible, widget does not adjust
the size. Temporary solution -- have single-line description.

Revision 7961  Directory Listing
Modified Sun Nov 23 19:01:51 2008 UTC (8 years, 9 months ago) by lorensen
Original Path: trunk/Modules/ChangeTracker
COMP: various warnings.

Revision 7950  Directory Listing
Modified Sat Nov 22 05:37:23 2008 UTC (8 years, 9 months ago) by pohl
Original Path: trunk/Modules/ChangeTracker
ENH: Meassure Growth and Shrinkage seperatly 

Revision 7949  Directory Listing
Modified Sat Nov 22 05:36:57 2008 UTC (8 years, 9 months ago) by pohl
Original Path: trunk/Modules/ChangeTracker
ENH: Meassure Growth and Shrinkage seperatly 

Revision 7948  Directory Listing
Modified Sat Nov 22 05:36:25 2008 UTC (8 years, 9 months ago) by pohl
Original Path: trunk/Modules/ChangeTracker
ENH: Meassure Growth and Shrinkage seperatly 

Revision 7947  Directory Listing
Modified Sat Nov 22 05:35:37 2008 UTC (8 years, 9 months ago) by pohl
Original Path: trunk/Modules/ChangeTracker
ENH: Meassure Growth and Shrinkage seperatly 

Revision 7940  Directory Listing
Modified Fri Nov 21 04:52:53 2008 UTC (8 years, 10 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: Implementation of the asynchronous execution of registration did
not take into account some GUI and workflow pipeline reset issues, which
caused usage difficulties. The code has been changed to do registration
synchronously upon analysis type selection.

Revision 7936  Directory Listing
Modified Fri Nov 21 02:29:17 2008 UTC (8 years, 10 months ago) by pohl
Original Path: trunk/Modules/ChangeTracker
STYLE: Just made changes for debugging code - running the pipeline from the commandline gives the same results as from gui

Revision 7935  Directory Listing
Modified Fri Nov 21 02:27:25 2008 UTC (8 years, 10 months ago) by pohl
Original Path: trunk/Modules/ChangeTracker
BUG: Removed bug that change value dependentend on initial value of Analysis_Intensity_Sensitivity - Analysis_Intensity_Scan*->SetOutValue were not updated

Revision 7934  Directory Listing
Modified Fri Nov 21 02:25:21 2008 UTC (8 years, 10 months ago) by pohl
Original Path: trunk/Modules/ChangeTracker
ENH: Added function to write out volume for easier debugging

Revision 7933  Directory Listing
Modified Fri Nov 21 02:24:34 2008 UTC (8 years, 10 months ago) by pohl
Original Path: trunk/Modules/ChangeTracker
STYLE: just changed default value of Analysis_Intensity_Sensitivity  

Revision 7932  Directory Listing
Modified Fri Nov 21 02:23:39 2008 UTC (8 years, 10 months ago) by pohl
Original Path: trunk/Modules/ChangeTracker
STYLE: just cleaned up code 

Revision 7916  Directory Listing
Modified Wed Nov 19 17:25:47 2008 UTC (8 years, 10 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: Linear registration part: added creation of the transform nodes and
release of pointers for the output volumes.

Revision 7915  Directory Listing
Modified Wed Nov 19 16:20:10 2008 UTC (8 years, 10 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: Added "Linear registration" module functionality for ROI
registration. Need to investigate better LR parameter settings.

Revision 7900  Directory Listing
Modified Tue Nov 18 19:21:28 2008 UTC (8 years, 10 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
BUG: fixed Baloon/Balloon typo
ENH: fixed warnings in ImageIslandFilter

Revision 7899  Directory Listing
Modified Tue Nov 18 19:11:25 2008 UTC (8 years, 10 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: added "Linear registration" module functionality, and corresponding
changes to MRML node, GUI initialization and event handling.

Revision 7896  Directory Listing
Modified Tue Nov 18 03:20:11 2008 UTC (8 years, 10 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
ENH: Change request from Kilian Pohl c/o Andriy Fedorov

Revision 7895  Directory Listing
Modified Mon Nov 17 22:36:57 2008 UTC (8 years, 10 months ago) by fedorov
Original Path: trunk/Modules/ChangeTracker
Copied from: trunk/Modules/TumorGrowth revision 7893
ENH: updated naming conventions for ChangeTracker module. Initial commit in a
sequence of updates to substitute rigid registration component of
ChangeTracker with the functionality of the "Linear registration" module.

Revision 7796  Directory Listing
Modified Wed Nov 5 16:39:36 2008 UTC (8 years, 10 months ago) by pohl
Original Path: trunk/Modules/TumorGrowth
ENH: Version used for Journal Publication - allows shrinkage and is validated

Revision 7780  Directory Listing
Modified Mon Nov 3 15:59:42 2008 UTC (8 years, 10 months ago) by hjohnson
Original Path: trunk/Modules/TumorGrowth
COMP:  Resolved missing include path to resolve compiler error: vtkSlicerVolumesLogic.h: No such file or directory

Revision 7773  Directory Listing
Modified Thu Oct 30 17:11:45 2008 UTC (8 years, 10 months ago) by pohl
Original Path: trunk/Modules/TumorGrowth
ENH: Allows to track shrinkage

Revision 7611  Directory Listing
Modified Sat Sep 27 14:57:40 2008 UTC (8 years, 11 months ago) by lorensen
Original Path: trunk/Modules/TumorGrowth
BUG: Missing include directory.

Revision 7568  Directory Listing
Modified Wed Sep 10 22:19:58 2008 UTC (9 years ago) by naucoin
Original Path: trunk/Modules/TumorGrowth
STYLE: took out an extra print out

Revision 7520  Directory Listing
Modified Fri Aug 29 16:07:54 2008 UTC (9 years ago) by naucoin
Original Path: trunk/Modules/TumorGrowth
COMP: removing unused vars, use of const char

Revision 7519  Directory Listing
Modified Fri Aug 29 15:44:58 2008 UTC (9 years ago) by naucoin
Original Path: trunk/Modules/TumorGrowth
COMP: set button parent to null before deleting

Revision 7518  Directory Listing
Modified Thu Aug 28 22:57:38 2008 UTC (9 years ago) by naucoin
Original Path: trunk/Modules/TumorGrowth
COMP: fixing compiler warnings, removed some asserts

Revision 7517  Directory Listing
Modified Thu Aug 28 22:37:43 2008 UTC (9 years ago) by naucoin
Original Path: trunk/Modules/TumorGrowth
COMP: clearing up compiler warnings

Revision 7448  Directory Listing
Modified Fri Aug 15 23:41:29 2008 UTC (9 years, 1 month ago) by pohl
Original Path: trunk/Modules/TumorGrowth
BUG: Took out all the print outs of temporary results

Revision 7446  Directory Listing
Modified Fri Aug 15 02:25:54 2008 UTC (9 years, 1 month ago) by pohl
Original Path: trunk/Modules/TumorGrowth
BUG: Not needed anymore

Revision 7445  Directory Listing
Modified Fri Aug 15 02:24:10 2008 UTC (9 years, 1 month ago) by pohl
Original Path: trunk/Modules/TumorGrowth
BUG: Not needed anymore

Revision 7444  Directory Listing
Modified Fri Aug 15 02:22:49 2008 UTC (9 years, 1 month ago) by pohl
Original Path: trunk/Modules/TumorGrowth
BUG: Not needed anymore

Revision 7360  Directory Listing
Modified Wed Jul 30 00:10:43 2008 UTC (9 years, 1 month ago) by pohl
Original Path: trunk/Modules/TumorGrowth
BUG: ITK_AUTOLOAD_PATH was not set correctly 

Revision 7350  Directory Listing
Modified Mon Jul 28 22:14:07 2008 UTC (9 years, 1 month ago) by pohl
Original Path: trunk/Modules/TumorGrowth
BUG: Function does not need to be called anymore

Revision 7330  Directory Listing
Modified Wed Jul 23 23:36:02 2008 UTC (9 years, 1 month ago) by pieper
Original Path: trunk/Modules/TumorGrowth
BUG: set module name when using module logic outside of slicer so the installation path can be correctly calculated

Revision 7323  Directory Listing
Modified Mon Jul 21 21:46:42 2008 UTC (9 years, 2 months ago) by pohl
Original Path: trunk/Modules/TumorGrowth
BUG: Did not work in release version because one comand was not executed inside  assert( ) 

Revision 7322  Directory Listing
Modified Mon Jul 21 21:45:04 2008 UTC (9 years, 2 months ago) by pohl
Original Path: trunk/Modules/TumorGrowth
BUG: Added more error messages to simplify debugging in the future

Revision 7321  Directory Listing
Modified Mon Jul 21 21:41:41 2008 UTC (9 years, 2 months ago) by pohl
Original Path: trunk/Modules/TumorGrowth
BUG: Piepeline would crash if VolumeNode had no image data attached to it - now explicitly checks for it 

Revision 7320  Directory Listing
Modified Mon Jul 21 21:37:51 2008 UTC (9 years, 2 months ago) by pohl
Original Path: trunk/Modules/TumorGrowth
BUG: Name change from  TumorGrowth to ChangeTracker also had to be done in the tcl files

Revision 7319  Directory Listing
Modified Mon Jul 21 18:23:36 2008 UTC (9 years, 2 months ago) by pohl
Original Path: trunk/Modules/TumorGrowth
BUG: Location of script changed but path was not updated 

Revision 7300  Directory Listing
Modified Tue Jul 15 23:49:12 2008 UTC (9 years, 2 months ago) by pohl
Original Path: trunk/Modules/TumorGrowth
BUG: Modified name of module based on Ron's suggestion

Revision 7236  Directory Listing
Modified Tue Jul 1 21:14:47 2008 UTC (9 years, 2 months ago) by barre
Original Path: trunk/Modules/TumorGrowth
ENH: now come one now, you can't do that, CMake will look for a CMakeLists.txt in Testing/ :)

Revision 7234  Directory Listing
Modified Tue Jul 1 20:32:52 2008 UTC (9 years, 2 months ago) by naucoin
Original Path: trunk/Modules/TumorGrowth
COMP: take out direct dependency on the vtkSlicerSlicesControlGUI header

Revision 7232  Directory Listing
Modified Tue Jul 1 19:44:57 2008 UTC (9 years, 2 months ago) by pohl
Original Path: trunk/Modules/TumorGrowth
ENH: Modified User interface according to Ron

Revision 7181  Directory Listing
Modified Wed Jun 25 17:49:35 2008 UTC (9 years, 2 months ago) by millerjv
Original Path: trunk/Modules/TumorGrowth
ENH: Compare view merge from branch (revision 7116) plus a bit of refactoring.

Revision 7176  Directory Listing
Modified Wed Jun 25 15:58:36 2008 UTC (9 years, 2 months ago) by barre
Original Path: trunk/Modules/TumorGrowth
COMP: minor. One of the reason Slicer3 is so slow to compile is that so many classes include STL headers in their own header, instead of their implementation file (PIMPL). Some of those headers are actually not needed anymore by said classes, or were put there "just in case I need a map, vector, list, etc.". The more it happens, the slower the build process gets, and the slower the dependencies are computed/resolved. Try to fix some.

Revision 7166  Directory Listing
Modified Wed Jun 25 06:06:45 2008 UTC (9 years, 2 months ago) by pohl
Original Path: trunk/Modules/TumorGrowth
BUG: Cleaned up the code and put in some comments

Revision 7164  Directory Listing
Modified Wed Jun 25 05:31:49 2008 UTC (9 years, 2 months ago) by pohl
Original Path: trunk/Modules/TumorGrowth
BUG: Module does not crash anymore after closing down

Revision 7163  Directory Listing
Modified Wed Jun 25 05:31:26 2008 UTC (9 years, 2 months ago) by pohl
Original Path: trunk/Modules/TumorGrowth
BUG: Module does not crash anymore after closing down

Revision 7162  Directory Listing
Modified Wed Jun 25 05:31:05 2008 UTC (9 years, 2 months ago) by pohl
Original Path: trunk/Modules/TumorGrowth
BUG: Module does not crash anymore after closing down

Revision 7161  Directory Listing
Modified Wed Jun 25 05:30:39 2008 UTC (9 years, 2 months ago) by pohl
Original Path: trunk/Modules/TumorGrowth
BUG: Module does not crash anymore after closing down

Revision 7160  Directory Listing
Modified Wed Jun 25 05:29:20 2008 UTC (9 years, 2 months ago) by pohl
Original Path: trunk/Modules/TumorGrowth
BUG: Module does not crash anymore after closing down

Revision 7159  Directory Listing
Modified Wed Jun 25 04:51:52 2008 UTC (9 years, 2 months ago) by pohl
Original Path: trunk/Modules/TumorGrowth
BUG: I do not know why it was checked in 

Revision 7158  Directory Listing
Modified Wed Jun 25 00:55:27 2008 UTC (9 years, 2 months ago) by barre
Original Path: trunk/Modules/TumorGrowth
ENH: rename tcl -> foo -> Tcl

Revision 7157  Directory Listing
Modified Wed Jun 25 00:54:40 2008 UTC (9 years, 2 months ago) by barre
Original Path: trunk/Modules/TumorGrowth
ENH: rename tcl -> foo -> Tcl

Revision 7156  Directory Listing
Modified Wed Jun 25 00:51:37 2008 UTC (9 years, 2 months ago) by barre
Original Path: trunk/Modules/TumorGrowth
COMP: fix the configure rules for the Tcl, Simulation and Testing files, they were not configured/copied to the right place (i.e. in the modules' share dir), and they were not installed at all. Also fixed the logic file to look at the right place, whether the module was built in Slicer3, built outside, or installed.

Revision 7146  Directory Listing
Modified Mon Jun 23 19:42:47 2008 UTC (9 years, 2 months ago) by pohl
Original Path: trunk/Modules/TumorGrowth
BUG: Get rid of leaks

Revision 7145  Directory Listing
Modified Mon Jun 23 18:18:37 2008 UTC (9 years, 2 months ago) by pohl
Original Path: trunk/Modules/TumorGrowth
BUG: Variables were not initialized correctly

Revision 7143  Directory Listing
Modified Mon Jun 23 16:07:08 2008 UTC (9 years, 2 months ago) by pohl
Original Path: trunk/Modules/TumorGrowth
BUG: Pointed on instance that did not exists anymore

Revision 7138  Directory Listing
Modified Sun Jun 22 16:15:21 2008 UTC (9 years, 3 months ago) by alexy
Original Path: trunk/Modules/TumorGrowth
BUG: fixed compile error using round

Revision 7131  Directory Listing
Modified Fri Jun 20 23:12:49 2008 UTC (9 years, 3 months ago) by pohl
Original Path: trunk/Modules/TumorGrowth
ENH: Added new Test Script for Demons Registration

Revision 7130  Directory Listing
Modified Fri Jun 20 23:11:16 2008 UTC (9 years, 3 months ago) by pohl
Original Path: trunk/Modules/TumorGrowth
BUG: Removed bug concerning Demons Registration with Nicole

Revision 7079  Directory Listing
Modified Thu Jun 12 21:36:37 2008 UTC (9 years, 3 months ago) by pohl
Original Path: trunk/Modules/TumorGrowth
ENH: Added Tutorial to module

Revision 7073  Directory Listing
Modified Thu Jun 12 09:38:56 2008 UTC (9 years, 3 months ago) by pohl
Original Path: trunk/Modules/TumorGrowth
BUG: Corrected spelling 

Revision 7070  Directory Listing
Modified Wed Jun 11 20:49:08 2008 UTC (9 years, 3 months ago) by pohl
Original Path: trunk/Modules/TumorGrowth
BUG: Took out tabs when writing results to file so that we can easier archieve the files

Revision 7069  Directory Listing
Modified Wed Jun 11 20:44:49 2008 UTC (9 years, 3 months ago) by pohl
Original Path: trunk/Modules/TumorGrowth
ENH: Included Progress Bar in Tumor Growth Module

Revision 7068  Directory Listing
Modified Wed Jun 11 20:44:35 2008 UTC (9 years, 3 months ago) by pohl
Original Path: trunk/Modules/TumorGrowth
ENH: Included Progress Bar in Tumor Growth Module

Revision 7067  Directory Listing
Modified Wed Jun 11 20:43:49 2008 UTC (9 years, 3 months ago) by pohl
Original Path: trunk/Modules/TumorGrowth
ENH: Included noise removal in analysis

Revision 7066  Directory Listing
Modified Wed Jun 11 20:41:53 2008 UTC (9 years, 3 months ago) by pohl
Original Path: trunk/Modules/TumorGrowth
ENH: Included Progress Bar in Tumor Growth Module

Revision 7065  Directory Listing
Modified Wed Jun 11 19:18:58 2008 UTC (9 years, 3 months ago) by pohl
Original Path: trunk/Modules/TumorGrowth
ENH: Data is saved now in different format

Revision 7064  Directory Listing
Modified Wed Jun 11 19:17:41 2008 UTC (9 years, 3 months ago) by pohl
Original Path: trunk/Modules/TumorGrowth
ENH: Data is saved now in different format

Revision 7063  Directory Listing
Modified Wed Jun 11 19:11:43 2008 UTC (9 years, 3 months ago) by pohl
Original Path: trunk/Modules/TumorGrowth
ENH: Minor changes in Pipeline

Revision 7062  Directory Listing
Modified Wed Jun 11 18:56:51 2008 UTC (9 years, 3 months ago) by pohl
Original Path: trunk/Modules/TumorGrowth
ENH: Minor changes in Pipeline

Revision 7055  Directory Listing
Modified Tue Jun 10 21:27:41 2008 UTC (9 years, 3 months ago) by pohl
Original Path: trunk/Modules/TumorGrowth
BUG: Output of registration is not written to a file anymore 

Revision 7051  Directory Listing
Modified Tue Jun 10 21:02:28 2008 UTC (9 years, 3 months ago) by pohl
Original Path: trunk/Modules/TumorGrowth
BUG: Changed SLICER_HOME to Slicer3_HOME !

Revision 7049  Directory Listing
Modified Tue Jun 10 18:52:41 2008 UTC (9 years, 3 months ago) by pohl
Original Path: trunk/Modules/TumorGrowth
BUG: changed GuiName to GUIName bc otherwise would cause error when loading module in Slicer 

Revision 7048  Directory Listing
Modified Tue Jun 10 18:37:00 2008 UTC (9 years, 3 months ago) by pohl
Original Path: trunk/Modules/TumorGrowth
ENH: Modified file so that it complies with new standard

Revision 7046  Directory Listing
Modified Tue Jun 10 18:26:19 2008 UTC (9 years, 3 months ago) by millerjv
Original Path: trunk/Modules/TumorGrowth
COMP: configuration issues

Revision 7041  Directory Listing
Modified Tue Jun 10 17:21:41 2008 UTC (9 years, 3 months ago) by millerjv
Original Path: trunk/Modules/TumorGrowth
COMP: configuration issues

Revision 7034  Directory Listing
Modified Tue Jun 10 14:38:08 2008 UTC (9 years, 3 months ago) by pohl
Original Path: trunk/Modules/TumorGrowth
ENH: Tumor Growth Module

Revision 7033  Directory Listing
Modified Tue Jun 10 14:32:16 2008 UTC (9 years, 3 months ago) by pohl
Original Path: trunk/Modules/TumorGrowth
ENH: Tumor Growth Module

Revision 7032  Directory Listing
Modified Tue Jun 10 14:20:08 2008 UTC (9 years, 3 months ago) by pohl
Original Path: trunk/Modules/TumorGrowth
ENH: Tumor Growth Module

Revision 7031  Directory Listing
Added Tue Jun 10 14:19:23 2008 UTC (9 years, 3 months ago) by pohl
Original Path: trunk/Modules/TumorGrowth
ENH: Tumor Growth Module

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