/[Slicer3]/branches/Slicer4-EMSegment/MRML
ViewVC logotype

Log of /branches/Slicer4-EMSegment/MRML

View Directory Listing Directory Listing


Sticky Revision:

Revision 17135 - Directory Listing
Modified Tue Aug 8 17:21:54 2017 UTC (2 months, 1 week ago) by msmolens
COMP: Fix inconsistent-missing-override warnings

This commit fixes warnings like the following:

    Slicer-0-build/EMSegment/MRML/vtkMRMLEMSNode.h:27:8: warning: 'PrintSelf' overrides a member function but is not marked 'override' [-Winconsistent-missing-override]
      void PrintSelf(ostream& os, vtkIndent indent);
           ^
    Slicer-0/Libs/MRML/Core/vtkMRMLNode.h:144:8: note: overridden virtual function is here
      void PrintSelf(ostream& os, vtkIndent indent) VTK_OVERRIDE;
           ^

From: Hina Shah <hina.shah@kitware.com>



Revision 17131 - Directory Listing
Modified Thu Jun 29 17:29:37 2017 UTC (3 months, 2 weeks ago) by msmolens
ENH: Call InitializeObjectBase() in New() methods

In VTK8 it's necessary for New() methods to call InitializeObjectBase() on the
new object for proper tracking with vtkDebugLeaks. The standard macros
(vtkStandardNewMacro, vtkObjectFactoryNewMacro) handle this. For those classes
that don't use the macros, add calls to InitializeObjectBase().

Continue to support earlier versions of VTK by wrapping calls to
InitializeObjectBase() in checks for the preprocessor define
VTK_HAS_INITIALIZE_OBJECT_BASE.

It's possible that many of these implementations could be simplified by using
the standard macros.

See also:
- https://github.com/Kitware/VTK/commit/e5c793dbdf87e838bb2b60c6a5905ced0e5548f9
- http://public.kitware.com/pipermail/vtk-developers/2016-September/034332.html


Revision 17126 - Directory Listing
Modified Sun Mar 12 18:33:29 2017 UTC (7 months ago) by jcfr
COMP: vtkMRMLEMSVolumeCollectionNode: Fix -Winfinite-recursion warning

Revision 17123 - Directory Listing
Modified Tue Aug 16 20:43:57 2016 UTC (14 months ago) by jcfr
STYLE: Improve IDE experience associating targets with folder
 
 Additionally, it also applies the following changes:
 * Use slicerMacroBuildLoadableModule instead of slicerMacroBuildQtModule
 * Start transitioning to lowercase CMake command names


Revision 17119 - Directory Listing
Modified Mon Jun 13 19:13:49 2016 UTC (16 months ago) by msmolens
COMP: Fix compilation with VTK 7.1

When Slicer is built with the current VTK master (upcoming VTK 7.1), compilation
fails because of several deprecated headers and methods. This commit fixes
compilation with VTK 7.1 by updating the usage of the deprecated headers and
methods. Compatibility with the current version of VTK that Slicer uses is
maintained.

Specific changes accounted for include:

- Kitware/VTK@d9c5ca0
  (Mark legacy methods as "legacy".)

- Kitware/VTK@3ae7dd3
  (ENH: Remove use of include <vtksys/ios/*> and vtksys_ios::*)

- Kitware/VTK@eaf0f6a
  (ENH: Remove use of include <vtksys/stl/*> and vtksys_stl::*)


Revision 17102 - Directory Listing
Modified Thu Jun 4 19:16:09 2015 UTC (2 years, 4 months ago) by lassoan
COMP: Made EMSegment use vtkMRMLLabelMapVolumeNode

Revision 17088 - Directory Listing
Modified Fri Oct 17 20:07:29 2014 UTC (3 years ago) by pohl
BUG: #3561 did not check if index < 0, which causes crashes

Revision 17042 - Directory Listing
Modified Wed Dec 4 19:51:53 2013 UTC (3 years, 10 months ago) by jcfr
COMP: Create Slicer4-EMSegment branch for current development.

Following discussion with Kilian Pohl, we agreed on creating
a dedicated branch to support the update of the module so that
it build and run against Slicer4.

It means that code pushed on [1] is expected for maintainance
of the EMSegment so that it build and run against Slicer3.

On the other hand, code pushed on [2] is non expected to be
backward compatible with Slicer3 and is done to ensure that
EMSegment build and run against Slicer4.

[1] http://svn.slicer.org/Slicer3/trunk/Modules/EMSegment
[2] http://svn.slicer.org/Slicer3/branches/Slicer4-EMSegment


For reference, the following command was used:

svn copy http://svn.slicer.org/Slicer3/trunk/Modules/EMSegment \
  http://svn.slicer.org/Slicer3/branches/Slicer4-EMSegment


Revision 17025 - Directory Listing
Modified Wed Apr 17 19:26:20 2013 UTC (4 years, 6 months ago) by pohl
Original Path: trunk/Modules/EMSegment/MRML
BUG: Fixed issue with SetSceneReference and bug 3067

Revision 17024 - Directory Listing
Modified Fri Mar 29 21:49:14 2013 UTC (4 years, 6 months ago) by pohl
Original Path: trunk/Modules/EMSegment/MRML
BUG: Commented out code for Slicer 3 so that it compiles again for both Slicer version

Revision 17016 - Directory Listing
Modified Wed Sep 26 14:08:26 2012 UTC (5 years ago) by finetjul
Original Path: trunk/Modules/EMSegment/MRML
BUG: Set node references in vtkMRML*Node::SetSceneReferences()

Regression from Slicer r20984, a scene is no longer set at load time (vtkMRMLParser).

See #2428
Closes #2569

Revision 17015 - Directory Listing
Modified Wed Sep 26 04:54:09 2012 UTC (5 years ago) by pohl
Original Path: trunk/Modules/EMSegment/MRML
BUG: GetReferencedSubScene does not work anymore - I added a test and will file a bug report

Revision 16998 - Directory Listing
Modified Mon Jun 25 22:53:05 2012 UTC (5 years, 3 months ago) by jcfr
Original Path: trunk/Modules/EMSegment/MRML
COMP: Update code and remove VTK legacy code

Revision 16982 - Directory Listing
Modified Thu Apr 5 07:44:25 2012 UTC (5 years, 6 months ago) by pohl
Original Path: trunk/Modules/EMSegment/MRML
STYLE: Changed number of default EM iterations to speed up EMSegmenter without Atlas - request of Ron

Revision 16888 - Directory Listing
Modified Mon Oct 24 16:43:41 2011 UTC (5 years, 11 months ago) by finetjul
Original Path: trunk/Modules/EMSegment/MRML
BUG: BiasCorrectionType is an int (0 or 1) and UseLLS_Recompute_Means is a bool

Revision 16811 - Directory Listing
Modified Thu Aug 11 22:49:50 2011 UTC (6 years, 2 months ago) by domibel
Original Path: trunk/Modules/EMSegment/MRML
BUG: Add debug code, on i386 AlignedTargetNodeID is suddenly NULL

Revision 16753 - Directory Listing
Modified Tue Jul 19 14:56:33 2011 UTC (6 years, 3 months ago) by haehn
Original Path: trunk/Modules/EMSegment/MRML
ENH: EMSegment4: Re-arrange includes, parcellation map support for wizard, other MRML hookups in the wizard.



Revision 16749 - Directory Listing
Modified Wed Jul 13 16:34:01 2011 UTC (6 years, 3 months ago) by haehn
Original Path: trunk/Modules/EMSegment/MRML
COMP: EMSegment4: Fix compilation due to includes re-arrangement.


Revision 16692 - Directory Listing
Modified Thu Jun 16 21:04:45 2011 UTC (6 years, 4 months ago) by domibel
Original Path: trunk/Modules/EMSegment/MRML
ENH: Added BiasCorrectionType - and added handler to EMSegmentMRMLManager

Revision 16684 - Directory Listing
Modified Sat Jun 11 00:24:00 2011 UTC (6 years, 4 months ago) by domibel
Original Path: trunk/Modules/EMSegment/MRML
ENH: Added flags to turn on/off bias correction

Revision 16570 - Directory Listing
Modified Thu May 5 13:13:54 2011 UTC (6 years, 5 months ago) by domibel
Original Path: trunk/Modules/EMSegment/MRML
STYLE: Typo

Revision 16538 - Directory Listing
Modified Mon May 2 07:48:29 2011 UTC (6 years, 5 months ago) by pohl
Original Path: trunk/Modules/EMSegment/MRML
ENH: IPMI 2007 Active Mean Field Added, Cleaned up a little bit Algorithm folder

Revision 16502 - Directory Listing
Modified Wed Apr 27 06:03:52 2011 UTC (6 years, 5 months ago) by pohl
Original Path: trunk/Modules/EMSegment/MRML
ENH: Additions needed for cine MRI

Revision 16498 - Directory Listing
Modified Tue Apr 26 20:16:51 2011 UTC (6 years, 5 months ago) by pohl
Original Path: trunk/Modules/EMSegment/MRML
BUG: When size of log mean and covariance was 0 then slicer crashed when calling GetLog... 

Revision 16279 - Directory Listing
Modified Fri Apr 1 05:50:07 2011 UTC (6 years, 6 months ago) by pohl
Original Path: trunk/Modules/EMSegment/MRML
ENH: Reduced mrml structure vtkMRMLEMSTreeParametersNode is only in there still for legacy purposes

Revision 15969 - Directory Listing
Modified Tue Feb 8 23:21:51 2011 UTC (6 years, 8 months ago) by domibel
Original Path: trunk/Modules/EMSegment/MRML
ENH: Now it is possible to choose between different registration packages

Revision 15958 - Directory Listing
Modified Mon Feb 7 01:04:42 2011 UTC (6 years, 8 months ago) by pohl
Original Path: trunk/Modules/EMSegment/MRML
BUG: Cloned volume names were not displayed correctly in volume menu of viewers

Revision 15952 - Directory Listing
Modified Sun Feb 6 18:32:33 2011 UTC (6 years, 8 months ago) by domibel
Original Path: trunk/Modules/EMSegment/MRML
ENH: Update warning text

Revision 15945 - Directory Listing
Modified Sun Feb 6 16:25:36 2011 UTC (6 years, 8 months ago) by pohl
Original Path: trunk/Modules/EMSegment/MRML
ENH: The template node and working data node are now properly segmented so that for a template file the workingdata node is null !

Revision 15943 - Directory Listing
Modified Sun Feb 6 01:41:55 2011 UTC (6 years, 8 months ago) by pohl
Original Path: trunk/Modules/EMSegment/MRML
BUG: Needed to leave in vtkMRMLEMSTargetNode for legacy purpose

Revision 15942 - Directory Listing
Modified Sun Feb 6 00:41:11 2011 UTC (6 years, 8 months ago) by pohl
Original Path: trunk/Modules/EMSegment/MRML
ENH: Simplified EMSegmenters MRML Structure in preperation for Slicer 4

Revision 15941 - Directory Listing
Modified Sun Feb 6 00:38:07 2011 UTC (6 years, 8 months ago) by pohl
Original Path: trunk/Modules/EMSegment/MRML
ENH: Simplified EMSegmenters MRML Structure in preperation for Slicer 4

Revision 15766 - Directory Listing
Modified Thu Jan 13 20:07:31 2011 UTC (6 years, 9 months ago) by pohl
Original Path: trunk/Modules/EMSegment/MRML
BUG: removed spelling mistake

Revision 15763 - Directory Listing
Modified Thu Jan 13 06:16:04 2011 UTC (6 years, 9 months ago) by pohl
Original Path: trunk/Modules/EMSegment/MRML
BUG: Replaced micro

Revision 15735 - Directory Listing
Modified Fri Jan 7 07:28:38 2011 UTC (6 years, 9 months ago) by pohl
Original Path: trunk/Modules/EMSegment/MRML
BUG: Subparcellation volume was not registered and thus would not be read into mrml scene

Revision 15619 - Directory Listing
Modified Tue Dec 7 07:01:59 2010 UTC (6 years, 10 months ago) by pohl
Original Path: trunk/Modules/EMSegment/MRML
ENH: Added postprocessing completing initial implementation of Ron's request

Revision 15605 - Directory Listing
Modified Sat Dec 4 07:01:54 2010 UTC (6 years, 10 months ago) by pohl
Original Path: trunk/Modules/EMSegment/MRML
ENH: Integration of subparcellation capabilties Part II

Revision 15599 - Directory Listing
Modified Thu Dec 2 07:36:11 2010 UTC (6 years, 10 months ago) by pohl
Original Path: trunk/Modules/EMSegment/MRML
ENH: Included parcellation map and color map window

Revision 15265 - Directory Listing
Modified Wed Oct 20 07:25:34 2010 UTC (6 years, 11 months ago) by pohl
Original Path: trunk/Modules/EMSegment/MRML
BUG: Addressed all issues voiced by Daniel, corrected the import bug, and modified code to reduce unimportant error messages show up in shell 

Revision 15240 - Directory Listing
Modified Tue Oct 19 04:03:03 2010 UTC (7 years ago) by pohl
Original Path: trunk/Modules/EMSegment/MRML
BUG: Fixed bugs related to the EMSegmenter

Revision 15222 - Directory Listing
Modified Fri Oct 15 01:12:02 2010 UTC (7 years ago) by pohl
Original Path: trunk/Modules/EMSegment/MRML
BUG: References were not deleted in scene when removing volume from node  - this caused issues when extracting the references related to this node from the scene (such when creating the template

Revision 15209 - Directory Listing
Modified Thu Oct 14 08:56:33 2010 UTC (7 years ago) by pohl
Original Path: trunk/Modules/EMSegment/MRML
BUG: Made Template creater work

Revision 15056 - Directory Listing
Modified Thu Sep 23 19:03:56 2010 UTC (7 years ago) by domibel
Original Path: trunk/Modules/EMSegment/MRML
STYLE: Fixed typo

Revision 15041 - Directory Listing
Modified Wed Sep 22 18:55:34 2010 UTC (7 years ago) by pieper
Original Path: trunk/Modules/EMSegment/MRML
ENH: make Slicer3/trunk be a copy of Slicer-3-6 branch.  New slicer4 development has moved to http://svn.slicer.org/Slicer4/trunk.  Use the Slicer3 trunk only for slicer3 maint purposes.

See this desription for details:

http://massmail.spl.harvard.edu/public-archives/slicer-devel/2010/005338.html


Revision 15022 - Directory Listing
Modified Mon Sep 20 11:05:59 2010 UTC (7 years ago) by pohl
Original Path: branches/Slicer-3-6/Modules/EMSegment/MRML
BUG: addresses bug 972

Revision 15021 - Directory Listing
Modified Sat Sep 18 07:48:40 2010 UTC (7 years, 1 month ago) by pohl
Original Path: branches/Slicer-3-6/Modules/EMSegment/MRML
BUG: Now in simple mode the gui steps are not shown anymore, I updated the help, inncluded automatic computation of training samples, and fixed the autosampling bug

Revision 13792 - Directory Listing
Modified Mon Jun 14 18:53:25 2010 UTC (7 years, 4 months ago) by pohl
Original Path: branches/Slicer-3-6/Modules/EMSegment/MRML
BUG: Transfered bug fixes from trunk to 3.6

Revision 13264 - Directory Listing
Modified Thu May 6 14:12:54 2010 UTC (7 years, 5 months ago) by pieper
Original Path: branches/Slicer-3-6/Modules/EMSegment/MRML
ENH: creating release branche for Slicer-3-6

Revision 13108 - Directory Listing
Modified Fri Apr 30 07:13:41 2010 UTC (7 years, 5 months ago) by pohl
Original Path: trunk/Modules/EMSegment/MRML
BUG: fixed preprocessing 

Revision 12824 - Directory Listing
Modified Tue Apr 20 04:55:22 2010 UTC (7 years, 6 months ago) by pohl
Original Path: trunk/Modules/EMSegment/MRML
STYLE: Made changes to EMSMRML architecture so that it would be wrapped by Tcl

Revision 12750 - Directory Listing
Modified Wed Apr 14 16:03:37 2010 UTC (7 years, 6 months ago) by pohl
Original Path: trunk/Modules/EMSegment/MRML
ENH: Included more plugins for IBM source code

Revision 12709 - Directory Listing
Modified Sat Apr 10 02:36:01 2010 UTC (7 years, 6 months ago) by pohl
Original Path: trunk/Modules/EMSegment/MRML
ENH: Interface with IBM source code

Revision 12701 - Directory Listing
Modified Fri Apr 9 06:06:20 2010 UTC (7 years, 6 months ago) by pohl
Original Path: trunk/Modules/EMSegment/MRML
ENH: Added interface to plug in IBM source code

Revision 12699 - Directory Listing
Modified Fri Apr 9 05:24:41 2010 UTC (7 years, 6 months ago) by pohl
Original Path: trunk/Modules/EMSegment/MRML
BUG: rolled back to bad revision in last commit - so I rolled back again to r9240 and only included bug fixes 

Revision 12566 - Directory Listing
Modified Wed Mar 31 19:45:18 2010 UTC (7 years, 6 months ago) by pohl
Original Path: trunk/Modules/EMSegment/MRML
ENH: Rolled back functionality to Slicer3.4 (r9240) and only included bug fixes

Revision 11843 - Directory Listing
Modified Thu Jan 28 22:05:16 2010 UTC (7 years, 8 months ago) by jcfr
Original Path: trunk/Modules/EMSegment/MRML
COMP: Fix various compilation warnings (unused, ...)

Note: size_t is an unsigned int, it means there is no need to check if
it's value is negative.

Revision 11823 - Directory Listing
Modified Thu Jan 28 09:09:23 2010 UTC (7 years, 8 months ago) by jcfr
Original Path: trunk/Modules/EMSegment/MRML
COMP: Fix various compilation warning (hidden virtual method, unused variable, ...)

Note1: Also moved vtkSlicerApplication.h up in the header include order
otherwise, when compiled with QT, it outputs that message:

#error qdatastream.h must be included before any header file that defines Status

Note2:
To fix such warning,
"base class‘base_class’should be explicitly initialized in the copy constructor"

the compy ctor and the '=' operator has been set as private member

Revision 10795 - Directory Listing
Modified Thu Oct 29 22:36:10 2009 UTC (7 years, 11 months ago) by barre
Original Path: trunk/Modules/EMSegment/MRML
ENH: support for new cameras and new views. Port from Slicer 3.4 branch. As mentioned on the mailing list, apologies for instabilities while these core changes are further tested. Fiducials do not seem to follow camera for example, this will be fixed. Send bugs to sebastien.barre@kitware.com; Thank you.

Revision 10551 - Directory Listing
Modified Wed Sep 30 21:14:33 2009 UTC (8 years ago) by fedorov
Original Path: trunk/Modules/EMSegment/MRML
BUG: merging fix from the 3-4 branch; increment on invalid iterator value
caused segfault


Revision 10483 - Directory Listing
Modified Wed Sep 16 21:16:09 2009 UTC (8 years, 1 month ago) by fedorov
Original Path: trunk/Modules/EMSegment/MRML
BUG: missing space


Revision 10084 - Directory Listing
Modified Wed Jul 29 00:36:33 2009 UTC (8 years, 2 months ago) by sylvain
Original Path: trunk/Modules/EMSegment/MRML
BUG: fix the WriteXML bug. Missing space at the beginning of line. vtkMRMLNode does not include a space at the end of the line. It's the responsibility of WriteXML functions in every module.

Revision 10052 - Directory Listing
Modified Mon Jul 27 22:44:35 2009 UTC (8 years, 2 months ago) by sylvain
Original Path: trunk/Modules/EMSegment/MRML
BUG: fix the WriteXML bug, remove the space that was added at the end of every line if the xml file

Revision 10025 - Directory Listing
Modified Sat Jul 25 00:03:50 2009 UTC (8 years, 2 months ago) by sylvain
Original Path: trunk/Modules/EMSegment/MRML
ENH: load a label map to accurately create the class distributions

Revision 9754 - Directory Listing
Modified Mon Jun 22 16:14:49 2009 UTC (8 years, 3 months ago) by sylvain
Original Path: trunk/Modules/EMSegment/MRML
ENH: create features to improve the usability of the EM Module. The goal is to enable the clinician to perform segmentation by expectation maximization in an efficient fashion. Among other features, an histogram visualization window has been implemented to let the user select the different percentages for the EM classes within an intuitive user interface.

Revision 9715 - Directory Listing
Modified Wed Jun 17 13:37:10 2009 UTC (8 years, 4 months ago) by pieper
Original Path: trunk/Modules/EMSegment/MRML
STYLE: fix spelling errors identified by Dominique as part of the debian checkin process

Revision 8192 - Directory Listing
Modified Sat Dec 27 16:34:01 2008 UTC (8 years, 9 months ago) by lorensen
Original Path: trunk/Modules/EMSegment/MRML
COMP: many warnings removed. STYLE: mainly indentation.


Revision 7595 - Directory Listing
Modified Fri Sep 19 15:11:59 2008 UTC (9 years ago) by hyang
Original Path: trunk/Modules/EMSegment/MRML
ENH: Enable user to specify a color for each leaf node of the anatomical tree (step 2 of EMSegment). Add some GUI components to vtkEMSegmentAnatomicalStructureStep. Add XML IO of colormap parameter to vtkMRMLEMSGlobalParametersNode and vtkEMSegmentMRMLManager.

Revision 7176 - Directory Listing
Modified Wed Jun 25 15:58:36 2008 UTC (9 years, 3 months ago) by barre
Original Path: trunk/Modules/EMSegment/MRML
COMP: minor. One of the reason Slicer3 is so slow to compile is that so many classes include STL headers in their own header, instead of their implementation file (PIMPL). Some of those headers are actually not needed anymore by said classes, or were put there "just in case I need a map, vector, list, etc.". The more it happens, the slower the build process gets, and the slower the dependencies are computed/resolved. Try to fix some.

Revision 6397 - Directory Listing
Modified Fri Apr 4 14:49:48 2008 UTC (9 years, 6 months ago) by davisb
Original Path: trunk/Modules/EMSegment/MRML
BUG: Fix problems with adding and removing channels in EMSegmenter, specifically bugs 179 and 181

Revision 6329 - Directory Listing
Modified Mon Mar 31 18:52:59 2008 UTC (9 years, 6 months ago) by davisb
Original Path: trunk/Modules/EMSegment/MRML
ENH: enable multithreading (for EM segmentation) by default


Revision 5240 - Directory Listing
Modified Tue Dec 18 05:28:19 2007 UTC (9 years, 10 months ago) by davisb
Original Path: trunk/Modules/EMSegment/MRML
ENH: add flag to bypass registration if it was already computed

Revision 5111 - Directory Listing
Modified Mon Dec 10 02:55:54 2007 UTC (9 years, 10 months ago) by davisb
Original Path: trunk/Modules/EMSegment/MRML
ENH: set more reasonable default parameters


Revision 5054 - Directory Listing
Modified Wed Dec 5 18:44:57 2007 UTC (9 years, 10 months ago) by davisb
Original Path: trunk/Modules/EMSegment/MRML
ENH: add switch for target-to-target registration

Revision 5010 - Directory Listing
Modified Fri Nov 30 16:44:03 2007 UTC (9 years, 10 months ago) by davisb
Original Path: trunk/Modules/EMSegment/MRML
ENH: set default iterations to nonzero reasonable defaults


Revision 5003 - Directory Listing
Modified Thu Nov 29 19:38:58 2007 UTC (9 years, 10 months ago) by davisb
Original Path: trunk/Modules/EMSegment/MRML
COMP: silence compiler warnings

Revision 4937 - Directory Listing
Modified Mon Nov 26 15:34:35 2007 UTC (9 years, 10 months ago) by davisb
Original Path: trunk/Modules/EMSegment/MRML
COMP: quiet warnings

Revision 4934 - Directory Listing
Modified Mon Nov 26 00:01:29 2007 UTC (9 years, 10 months ago) by davisb
Original Path: trunk/Modules/EMSegment/MRML
BUG: remove duplicate mrml reference counts

Revision 4932 - Directory Listing
Modified Sun Nov 25 23:54:42 2007 UTC (9 years, 10 months ago) by davisb
Original Path: trunk/Modules/EMSegment/MRML
BUG: ivar was not initialized

Revision 4931 - Directory Listing
Modified Sun Nov 25 22:15:28 2007 UTC (9 years, 10 months ago) by davisb
Original Path: trunk/Modules/EMSegment/MRML
ENH: change EMSeg parameter tree to use double links (add parent to child links) for MRML recursive copy as well as performence

Revision 3614 - Directory Listing
Modified Sat Jun 16 18:57:49 2007 UTC (10 years, 4 months ago) by davisb
Original Path: trunk/Modules/EMSegment/MRML
ENH: added EMSeg ClassInteractionMatrices to MRML/Logic

Revision 3613 - Directory Listing
Modified Sat Jun 16 18:56:51 2007 UTC (10 years, 4 months ago) by davisb
Original Path: trunk/Modules/EMSegment/MRML
ENH: added EMSeg ClassInteractionMatrices to MRML/Logic

Revision 3612 - Directory Listing
Modified Sat Jun 16 16:14:10 2007 UTC (10 years, 4 months ago) by davisb
Original Path: trunk/Modules/EMSegment/MRML
ENH: add visual row seperator in matrices


Revision 3611 - Directory Listing
Modified Sat Jun 16 16:13:08 2007 UTC (10 years, 4 months ago) by davisb
Original Path: trunk/Modules/EMSegment/MRML
ENH: added method for getting child index by ID

Revision 3562 - Directory Listing
Modified Tue Jun 12 00:46:44 2007 UTC (10 years, 4 months ago) by davisb
Original Path: trunk/Modules/EMSegment/MRML
BUG: fix movement of target images in EM MRMLManager

Revision 3524 - Directory Listing
Modified Fri Jun 8 05:33:20 2007 UTC (10 years, 4 months ago) by davisb
Original Path: trunk/Modules/EMSegment/MRML
BUG: fix memory leaks

Revision 3523 - Directory Listing
Modified Fri Jun 8 04:33:53 2007 UTC (10 years, 4 months ago) by davisb
Original Path: trunk/Modules/EMSegment/MRML
ENH: add clone target and atlas volumes (for preprocessing)
ENH: connect normalization filter to pipeline---works for first time


Revision 3522 - Directory Listing
Modified Fri Jun 8 04:32:19 2007 UTC (10 years, 4 months ago) by davisb
Original Path: trunk/Modules/EMSegment/MRML
COMPILE: silence vcc compiler warning

Revision 3498 - Directory Listing
Modified Thu Jun 7 03:36:47 2007 UTC (10 years, 4 months ago) by davisb
Original Path: trunk/Modules/EMSegment/MRML
ENH: EMSegment major surgery...
ENH: created EMSegment MRMLManager facade class to manage/hide MRML node complexity
ENH: added working data node to get ready for intensity normalized images
ENH: now intensity sample points are stored in mrml and can be reloaded
ENH: minor bug fixes and improved warnings



Revision 3466 - Directory Listing
Modified Mon Jun 4 15:11:32 2007 UTC (10 years, 4 months ago) by davisb
Original Path: trunk/Modules/EMSegment/MRML
ENH: move intensity normalization parameters to global parameters
ENH: add working data node to segmenter node


Revision 3464 - Directory Listing
Modified Mon Jun 4 14:37:54 2007 UTC (10 years, 4 months ago) by davisb
Original Path: trunk/Modules/EMSegment/MRML
BUG: edit mispelling of node name

Revision 3457 - Directory Listing
Modified Sat Jun 2 19:17:54 2007 UTC (10 years, 4 months ago) by davisb
Original Path: trunk/Modules/EMSegment/MRML
ENH: add default intensity normalization types\nENH: add Enabled ivar

Revision 3456 - Directory Listing
Modified Sat Jun 2 19:16:20 2007 UTC (10 years, 4 months ago) by davisb
Original Path: trunk/Modules/EMSegment/MRML
ENH: deal with reference IDs in a more consistent manner

Revision 3454 - Directory Listing
Modified Fri Jun 1 19:36:50 2007 UTC (10 years, 4 months ago) by davisb
Original Path: trunk/Modules/EMSegment/MRML
ENH: improved error checking and error messages

Revision 3445 - Directory Listing
Modified Thu May 31 13:28:26 2007 UTC (10 years, 4 months ago) by davisb
Original Path: trunk/Modules/EMSegment/MRML
BUG: remove extra read of intensity normalization parameters

Revision 3444 - Directory Listing
Modified Thu May 31 12:30:32 2007 UTC (10 years, 4 months ago) by davisb
Original Path: trunk/Modules/EMSegment/MRML
ENH: added EMSegment MRML tests

Revision 3439 - Directory Listing
Modified Thu May 31 00:56:46 2007 UTC (10 years, 4 months ago) by davisb
Original Path: trunk/Modules/EMSegment/MRML
ENH: temporarily disable new EMSeg code


Revision 3437 - Directory Listing
Modified Wed May 30 23:45:21 2007 UTC (10 years, 4 months ago) by davisb
Original Path: trunk/Modules/EMSegment/MRML
ENH: incorporation of EMSeg intensity normalization---recovery from svn crash

Revision 3434 - Directory Listing
Modified Wed May 30 19:05:18 2007 UTC (10 years, 4 months ago) by pieper
Original Path: trunk/Modules/EMSegment/MRML
BUG: Recover changes lost due to database crash in the server

Revision 3431 - Directory Listing
Modified Thu May 24 14:37:28 2007 UTC (10 years, 4 months ago) by davisb
Original Path: trunk/Modules/EMSegment/MRML
ENH: reduce extraneous dependencies/references between MRML nodes in EMSegment parameter set


Revision 2323 - Directory Listing
Modified Thu Jan 25 18:03:18 2007 UTC (10 years, 8 months ago) by davisb
Original Path: trunk/Modules/EMSegment/MRML
STYLE: quieting style problems given by "KWStyle -xml VTK.kws.xml"


Revision 2236 - Directory Listing
Modified Fri Jan 12 18:56:33 2007 UTC (10 years, 9 months ago) by davisb
Original Path: trunk/Modules/EMSegment/MRML
ENH: update mrml nodes to use vtkSetReferenceStringMacro in order to properly update reference ids


Revision 1970 - Directory Listing
Added Mon Jan 1 23:48:28 2007 UTC (10 years, 9 months ago) by davisb
Original Path: trunk/Modules/EMSegment/MRML
ENH: adding EMSegment module


An Exception Has Occurred

Python Traceback

Traceback (most recent call last):
  File &quot;/usr/lib/viewvc/lib/viewvc.py&quot;, line 4844, in main
    request.run_viewvc()
  File &quot;/usr/lib/viewvc/lib/viewvc.py&quot;, line 402, in run_viewvc
    self.view_func(self)
  File &quot;/usr/lib/viewvc/lib/viewvc.py&quot;, line 2950, in view_log
    generate_page(request, &quot;log&quot;, data)
  File &quot;/usr/lib/viewvc/lib/viewvc.py&quot;, line 944, in generate_page
    template.generate(server_fp, data)
  File &quot;/usr/lib/viewvc/lib/ezt.py&quot;, line 329, in generate
    self._execute(self.program, ctx)
  File &quot;/usr/lib/viewvc/lib/ezt.py&quot;, line 458, in _execute
    step[0](step[1], ctx)
  File &quot;/usr/lib/viewvc/lib/ezt.py&quot;, line 466, in _cmd_print
    raise Exception(&quot;Unprintable value type for '%s'&quot; % (str(valrefs[0][0])))
Exception: Unprintable value type for 'logsort_hidden_values'