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Revision 17141 - Directory Listing
Modified Thu Sep 21 01:43:15 2017 UTC (3 weeks, 5 days ago) by lassoan
BUG: Fixed test error due to changed selection node

Selection node has now a activePlotChartID member.

Revision 17130 - Directory Listing
Modified Tue May 30 20:17:20 2017 UTC (4 months, 2 weeks ago) by lassoan
ENH: Use external iterators to traverse shared collections

Revision 17127 - Directory Listing
Modified Tue Apr 25 04:56:13 2017 UTC (5 months, 3 weeks ago) by lassoan
BUG: Fixed test failures

Caused by removing extra spaces in MRML scene files.

Revision 17123 - Directory Listing
Modified Tue Aug 16 20:43:57 2016 UTC (14 months ago) by jcfr
STYLE: Improve IDE experience associating targets with folder
 
 Additionally, it also applies the following changes:
 * Use slicerMacroBuildLoadableModule instead of slicerMacroBuildQtModule
 * Start transitioning to lowercase CMake command names


Revision 17115 - Directory Listing
Modified Mon Nov 30 19:57:27 2015 UTC (22 months, 2 weeks ago) by lassoan
ENH: Updated test baseline corresponding to Slicer core changes

Required by Table node support added in rev 24783

Revision 17113 - Directory Listing
Modified Thu Nov 12 00:04:08 2015 UTC (23 months ago) by pohl
BUG: Slicer4-EMSegment -  In EMSegmentCommandLine loadAtlasNonCentered did not change value for some reason - so renamed it and now it works as expected 

Revision 17107 - Directory Listing
Modified Tue Oct 6 20:45:14 2015 UTC (2 years ago) by naucoin
BUG: update test MRML to include singletonTag

As of Slicer4 svn 24582 the vtkMRMLNode is writing
out the singleton tag to MRML. Update this testing
MRML file to include it so that the test EMSeg_MRML_DiffReadWriteNodes
will pass when comparing the baseline mrml file to the
written one.

Issue #4006



Revision 17095 - Directory Listing
Modified Tue Mar 10 04:46:54 2015 UTC (2 years, 7 months ago) by jcfr
BUG: Fix EMSeg_MRML_DiffReadWriteNodes test

Add missing attribute 'placeModePersistence' into mrml scene used for the Tutorial tests

Revision 17093 - Directory Listing
Modified Fri Jan 9 17:17:37 2015 UTC (2 years, 9 months ago) by jcfr
BUG: Remove invalid BRAINSFit argument

This commit removes deprecated (and unused for a long time) command line options
from the most recent version of BRAINSTools. These command line options have
been NO-OP operations for a long time. They have been removed in the version
of BRAINSTools now used in Slicer r23872.

Thanks to "Hans Johnson <hans-johnson@uiowa.edu>" for providing the patch.

Revision 17084 - Directory Listing
Modified Tue Sep 16 03:15:09 2014 UTC (3 years, 1 month ago) by jcfr
BUG: Fix test EMSeg_SlicerCommonInterfaceTestGeneral on windows

This commit ensures the ITK IO factory are registered.

Revision 17079 - Directory Listing
Modified Mon Sep 1 21:34:25 2014 UTC (3 years, 1 month ago) by pohl
ENH: Changed one of the Tests so that they only perform affine registration - before all registration tests performed affine and non-rigid together

Revision 17069 - Directory Listing
Modified Thu Jul 10 03:47:31 2014 UTC (3 years, 3 months ago) by pohl
BUG: Extesions did not look in right directory - in addition CMTK could pass even if CMTK was not installed as EMSegmenter automatically switches to Brains

Revision 17068 - Directory Listing
Modified Wed Jul 9 20:36:51 2014 UTC (3 years, 3 months ago) by pohl
BUG: Just checking inconsistency between machines

Revision 17065 - Directory Listing
Modified Mon Jun 23 17:56:47 2014 UTC (3 years, 3 months ago) by pohl
BUG: Added Test 6 to expose crash of vtkImageIslandFilter due to VTK6 transition

Revision 17060 - Directory Listing
Modified Thu Jun 19 20:11:06 2014 UTC (3 years, 3 months ago) by pohl
BUG: Fixed bug with respect to Image inhomogeneity; included vtkImageLabelPropagation in SlicerCommonInterFaceTest1 so it would fail as this is also the reason for EMSegCL_Task_MRIHumanBrainFullParcellation_BRAINS_small failing

Revision 17056 - Directory Listing
Modified Tue Jun 17 16:20:30 2014 UTC (3 years, 4 months ago) by pohl
BUG: Test failed as MRML node now also include version number in mrml file 

Revision 17055 - Directory Listing
Modified Mon Jun 16 23:02:03 2014 UTC (3 years, 4 months ago) by pohl
BUG: data() is not part of std::vector on windows compilers

Revision 17053 - Directory Listing
Modified Wed Jun 11 21:41:53 2014 UTC (3 years, 4 months ago) by pohl
BUG: N4ITK changes the image range which can cause problems for images of scalar type short if they fall outside the range

Revision 17050 - Directory Listing
Modified Mon May 19 19:03:57 2014 UTC (3 years, 4 months ago) by pohl
BUG: I expanded vtkSlicerCommonInterfaceTest1.cxx to expose a bug currently causing all EMSegmenter Commmand Line Tests to fail 

Revision 17049 - Directory Listing
Modified Mon May 19 18:47:04 2014 UTC (3 years, 4 months ago) by pohl
BUG: I expanded vtkSlicerCommonInterfaceTest1.cxx to expose a bug currently causing all EMSegmenter Commmand Line Tests to fail 

Revision 17045 - Directory Listing
Modified Thu May 1 19:44:32 2014 UTC (3 years, 5 months ago) by finetjul
ENH: Add VTK 6 support

Revision 17042 - Directory Listing
Modified Wed Dec 4 19:51:53 2013 UTC (3 years, 10 months ago) by jcfr
COMP: Create Slicer4-EMSegment branch for current development.

Following discussion with Kilian Pohl, we agreed on creating
a dedicated branch to support the update of the module so that
it build and run against Slicer4.

It means that code pushed on [1] is expected for maintainance
of the EMSegment so that it build and run against Slicer3.

On the other hand, code pushed on [2] is non expected to be
backward compatible with Slicer3 and is done to ensure that
EMSegment build and run against Slicer4.

[1] http://svn.slicer.org/Slicer3/trunk/Modules/EMSegment
[2] http://svn.slicer.org/Slicer3/branches/Slicer4-EMSegment


For reference, the following command was used:

svn copy http://svn.slicer.org/Slicer3/trunk/Modules/EMSegment \
  http://svn.slicer.org/Slicer3/branches/Slicer4-EMSegment


Revision 17037 - Directory Listing
Modified Thu Sep 19 19:39:33 2013 UTC (4 years ago) by pohl
Original Path: trunk/Modules/EMSegment/Testing
ENH: a) To run EMSegmenter with tools not part of the Slicer Extension one can now only has to put them in the ~/.config/EMSegmentCustom/<Program Name> e.g. if one wants to run CMTK in Slicer4 just copy or link the bin directory of CMTK to ~/.config/EMSegmentCustom/CMTK4Slicer b) Created Testscripts for CMTK which are turned off by default c) turned off flag to run extended DefaultNode Testing

Revision 17036 - Directory Listing
Modified Wed Sep 18 17:18:54 2013 UTC (4 years ago) by pohl
Original Path: trunk/Modules/EMSegment/Testing
BUG: All my tests now pass

Revision 17034 - Directory Listing
Modified Tue Sep 17 02:54:38 2013 UTC (4 years, 1 month ago) by jcfr
Original Path: trunk/Modules/EMSegment/Testing
BUG: Update mrml baseline to account for refactoring of selection node

For details see Slicer4 r22310

This will fix the failing test "EMSeg_MRML_DiffReadWriteNodes"

Revision 17033 - Directory Listing
Modified Fri Aug 9 03:14:25 2013 UTC (4 years, 2 months ago) by pohl
Original Path: trunk/Modules/EMSegment/Testing
BUG: tmp files with extension .raw were not removed

Revision 17032 - Directory Listing
Modified Tue Jul 23 19:51:47 2013 UTC (4 years, 2 months ago) by pohl
Original Path: trunk/Modules/EMSegment/Testing
ENH: Additional Tests for debugging

Revision 17031 - Directory Listing
Modified Tue Jul 23 19:29:07 2013 UTC (4 years, 2 months ago) by pohl
Original Path: trunk/Modules/EMSegment/Testing
ENH: Additional Tests for Debugging

Revision 17029 - Directory Listing
Modified Fri Jul 12 23:23:03 2013 UTC (4 years, 3 months ago) by pohl
Original Path: trunk/Modules/EMSegment/Testing
BUG: EMSeg_MRMLManagerTest did not fail when error messages appeared

Revision 17021 - Directory Listing
Modified Fri Feb 15 22:46:22 2013 UTC (4 years, 8 months ago) by jcfr
Original Path: trunk/Modules/EMSegment/Testing
BUG: Ensure ITK IO factory are registered when building against ITKv4

Revision 17017 - Directory Listing
Modified Wed Sep 26 18:07:15 2012 UTC (5 years ago) by pohl
Original Path: trunk/Modules/EMSegment/Testing
STYLE: Just changed names of test so that EMSeg gives back all the test associated with this module

Revision 17016 - Directory Listing
Modified Wed Sep 26 14:08:26 2012 UTC (5 years ago) by finetjul
Original Path: trunk/Modules/EMSegment/Testing
BUG: Set node references in vtkMRML*Node::SetSceneReferences()

Regression from Slicer r20984, a scene is no longer set at load time (vtkMRMLParser).

See #2428
Closes #2569

Revision 17015 - Directory Listing
Modified Wed Sep 26 04:54:09 2012 UTC (5 years ago) by pohl
Original Path: trunk/Modules/EMSegment/Testing
BUG: GetReferencedSubScene does not work anymore - I added a test and will file a bug report

Revision 17011 - Directory Listing
Modified Tue Aug 7 04:25:08 2012 UTC (5 years, 2 months ago) by pohl
Original Path: trunk/Modules/EMSegment/Testing
BUG: EMSegCL_Task_MRIHumanBrainExp_BRAINS_small failed in Slicer 4 bc the atlas volumes were read in centered - also speed up the test

Revision 17010 - Directory Listing
Modified Tue Aug 7 03:08:33 2012 UTC (5 years, 2 months ago) by pohl
Original Path: trunk/Modules/EMSegment/Testing
BUG: EMSegCL_RunSetEverything was failing in Slicer 4 bc the input was read in non-centered and the atlas was read in centered - now the atlas is also read in non-centered

Revision 17005 - Directory Listing
Modified Fri Aug 3 21:19:36 2012 UTC (5 years, 2 months ago) by pohl
Original Path: trunk/Modules/EMSegment/Testing
BUG: For Slicer3 build -  EMSegCL_Task_TestAtlasCluster_BRAINS_small was supposed to be executed for all platforms other than windows and it was just the other way around which caused cdash to report failing tests

Revision 17003 - Directory Listing
Modified Mon Jul 30 06:00:49 2012 UTC (5 years, 2 months ago) by pohl
Original Path: trunk/Modules/EMSegment/Testing
BUG: #1622 remove intermediate files  

Revision 16986 - Directory Listing
Modified Thu Apr 5 19:03:14 2012 UTC (5 years, 6 months ago) by pohl
Original Path: trunk/Modules/EMSegment/Testing
BUG: Default setting had changed in one node

Revision 16983 - Directory Listing
Modified Thu Apr 5 18:35:30 2012 UTC (5 years, 6 months ago) by pohl
Original Path: trunk/Modules/EMSegment/Testing
BUG: Test failed bc I changed default value of one node's entry

Revision 16981 - Directory Listing
Modified Thu Apr 5 07:40:42 2012 UTC (5 years, 6 months ago) by pohl
Original Path: trunk/Modules/EMSegment/Testing
BUG: Removed atlas test from windows platform and added 2 input channel test

Revision 16976 - Directory Listing
Modified Thu Apr 5 05:12:40 2012 UTC (5 years, 6 months ago) by pohl
Original Path: trunk/Modules/EMSegment/Testing
BUG:Atlas is only supported under linux and mac so disabled corresponding test

Revision 16973 - Directory Listing
Modified Sun Mar 11 23:48:59 2012 UTC (5 years, 7 months ago) by pohl
Original Path: trunk/Modules/EMSegment/Testing
BUG: Due to name changes tcl names and tests have to be changed too

Revision 16932 - Directory Listing
Modified Sun Jan 15 07:41:46 2012 UTC (5 years, 9 months ago) by pohl
Original Path: trunk/Modules/EMSegment/Testing
STYLE: reduced time of lengthly test

Revision 16930 - Directory Listing
Modified Wed Dec 28 00:29:57 2011 UTC (5 years, 9 months ago) by finetjul
Original Path: trunk/Modules/EMSegment/Testing
BUG: EMSegment test was using Slicer3 mrml file comparison test instead of Slicer4

Revision 16929 - Directory Listing
Modified Wed Dec 28 00:05:26 2011 UTC (5 years, 9 months ago) by jcfr
Original Path: trunk/Modules/EMSegment/Testing
COMP: EMSegment - Use Slicer_VERSION_{MAJOR, MINOR, PATCH} consistently

* Add compatibility CMake code so that it works as expected on both Slicer3 and Slicer4

* See http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=18962

Revision 16928 - Directory Listing
Modified Tue Dec 27 23:55:13 2011 UTC (5 years, 9 months ago) by finetjul
Original Path: trunk/Modules/EMSegment/Testing
BUG: Add Slicer4 specific mrml file for EMSegment test EMSeg_DefaultMRMLNodes

Revision 16922 - Directory Listing
Modified Fri Dec 9 20:46:57 2011 UTC (5 years, 10 months ago) by finetjul
Original Path: trunk/Modules/EMSegment/Testing
ENH: vtkMRMLScene::*ActiveScene is obsolete in Slicer 4

Revision 16871 - Directory Listing
Modified Wed Oct 12 22:14:56 2011 UTC (6 years ago) by jcfr
Original Path: trunk/Modules/EMSegment/Testing
COMP: Tests now use CMAKE_BINARY_DIR instead of Slicer3_BINARY_DIR

* This will ensure that the test "EMSegCL_IntermediateResults" passes when
EMSegment is built in Slicer4 either as a regular module or an extension.

Revision 16858 - Directory Listing
Modified Wed Oct 12 22:14:25 2011 UTC (6 years ago) by jcfr
Original Path: trunk/Modules/EMSegment/Testing
STYLE: Re-organize header includes and add comments

Revision 16857 - Directory Listing
Modified Wed Oct 12 22:14:22 2011 UTC (6 years ago) by jcfr
Original Path: trunk/Modules/EMSegment/Testing
COMP: Re-organize CMake code so that it works properly for both Slicer3 and Slicer4

* Remove extra CMake files

* Simplify code, fix indent

* Testing:
 - Add macro: ADD_EMSEGMENT_TEST and ADD_EMSEGMENT_DIFF_TEST
 - Test launcher: Use generator expression and remove logic associated
with intermediate directory

Revision 16843 - Directory Listing
Modified Fri Sep 16 20:22:21 2011 UTC (6 years, 1 month ago) by haehn
Original Path: trunk/Modules/EMSegment/Testing
ENH: EMSegment: Sync with Slicer4 repository, rev. 18096.



Revision 16841 - Directory Listing
Modified Wed Sep 14 13:33:11 2011 UTC (6 years, 1 month ago) by haehn
Original Path: trunk/Modules/EMSegment/Testing
BUG: EMSegment4: Use the new variable name for commandline module's bin dir.



Revision 16813 - Directory Listing
Modified Fri Aug 12 16:57:05 2011 UTC (6 years, 2 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
ENH: Add more scalartype tests

Revision 16812 - Directory Listing
Modified Fri Aug 12 16:16:52 2011 UTC (6 years, 2 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
ENH: Add smaller testdata

Revision 16768 - Directory Listing
Modified Tue Jul 26 16:00:54 2011 UTC (6 years, 2 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
BUG: Fix path to test data

Revision 16767 - Directory Listing
Modified Tue Jul 26 15:55:00 2011 UTC (6 years, 2 months ago) by haehn
Original Path: trunk/Modules/EMSegment/Testing
COMP: EMSegment4: Re-enable blackbox testing in Slicer4.



Revision 16762 - Directory Listing
Modified Fri Jul 22 19:22:54 2011 UTC (6 years, 2 months ago) by haehn
Original Path: trunk/Modules/EMSegment/Testing
ENH: EMSegment: Fixed tests for Slicer4.

 * Several changes to the .tcl files to access functionality in a general way for Slicer3 and Slicer4.
 * Several changes to the Qt Widgets to synchronize with the MRML scene properly in Slicer4.
 * Removed dependenices to the Slicer3 GUI.




Revision 16761 - Directory Listing
Modified Fri Jul 22 18:18:43 2011 UTC (6 years, 2 months ago) by pohl
Original Path: trunk/Modules/EMSegment/Testing
BUG: Now works under Slicer4

Revision 16760 - Directory Listing
Modified Fri Jul 22 15:06:24 2011 UTC (6 years, 2 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
ENH: Add registration method DEMONS

Revision 16755 - Directory Listing
Modified Wed Jul 20 19:00:25 2011 UTC (6 years, 2 months ago) by haehn
Original Path: trunk/Modules/EMSegment/Testing
ENH: EMSegment: Re-structured and cleaned up CMake files.

 * split CMakeLists.txt into smaller files in the new folder CMake/ to support readability since they
   are used for Slicer3 and Slicer4

 * deactivated AtlasCreator dependency for Slicer4 by disabling the AC test

 * several other cleanups



Revision 16753 - Directory Listing
Modified Tue Jul 19 14:56:33 2011 UTC (6 years, 3 months ago) by haehn
Original Path: trunk/Modules/EMSegment/Testing
ENH: EMSegment4: Re-arrange includes, parcellation map support for wizard, other MRML hookups in the wizard.



Revision 16734 - Directory Listing
Modified Sat Jul 9 04:00:27 2011 UTC (6 years, 3 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
ENH: Add basic plastimatch support (currently without resampling)

Revision 16729 - Directory Listing
Modified Tue Jul 5 16:00:23 2011 UTC (6 years, 3 months ago) by haehn
Original Path: trunk/Modules/EMSegment/Testing
COMP: Fixed typo.


Revision 16728 - Directory Listing
Modified Tue Jul 5 15:58:13 2011 UTC (6 years, 3 months ago) by haehn
Original Path: trunk/Modules/EMSegment/Testing
COMP: EMSegment4: Do not use SETIFEMPTY and do not define a PROJECT when building for Slicer4 as an extension.


Revision 16722 - Directory Listing
Modified Fri Jul 1 21:37:33 2011 UTC (6 years, 3 months ago) by haehn
Original Path: trunk/Modules/EMSegment/Testing
ENH: EMSegment: Success in running segmentations in Slicer4.

 * 22/27 tests pass in Slicer4
 * code cleanup



Revision 16721 - Directory Listing
Modified Fri Jul 1 16:16:38 2011 UTC (6 years, 3 months ago) by haehn
Original Path: trunk/Modules/EMSegment/Testing
ENH: EMSegment: Added dynamic frame creation for Slicer4.

 * The dynamic frame creation now runs through the SlicerCommonInterface for both Slicer3 and Slicer4
 * Dynamic frames are shown properly in Slicer3 and Slicer4
 * Fixed warning in EMSegmentTclInterpreter
 * Fixed --no-error-popup flag in EMSegment tests for Slicer4
 


Revision 16718 - Directory Listing
Modified Thu Jun 30 03:33:49 2011 UTC (6 years, 3 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
ENH: Updated attribute

Revision 16715 - Directory Listing
Modified Wed Jun 29 17:38:03 2011 UTC (6 years, 3 months ago) by haehn
Original Path: trunk/Modules/EMSegment/Testing
ENH: EMSegment: Un-tied the tcl files from the GUI.

 * This was necessary for the Slicer4 port.
 * To untie from the GUI, the tcl interface had to be changed like this:

   * in simple and advanced mode, a pointer to the EMSegmentLogic has to be passed to:
     proc ShowUserInterface { {LOGIC ""} }

   * this will call the [InitVariables $LOGIC] function with the logic as an argument

   * in InitVariables, the Logic will be queried for the SlicerCommonInterface which then
     provides the following functions to access parts of the GUI:

     // Slicer3
     vtkEMSegmentKWDynamicFrame* GetSimpleDynamicFrame();
     vtkEMSegmentKWDynamicFrame* GetAdvancedDynamicFrame();

     // Slicer4
     vtkSlicerCommonInterface* GetSimpleDynamicFrame();
     vtkSlicerCommonInterface* GetAdvancedDynamicFrame();

   * this commit only includes the Slicer3 functionality

   * vtkSlicerCommonInterface holds also the same methods as vtkEMSegmentKWDynamicFrame so that the tcl
     tasks can access the convenience methods to create GUI elements in the same way in Slicer3 and Slicer4

 * Changing the tcl interface included changes to GenericTask.tcl, all other tcl-Task files and the Template.tcl

 * The EMSegmentGUI and the Tests pass



Revision 16706 - Directory Listing
Modified Wed Jun 22 22:13:14 2011 UTC (6 years, 3 months ago) by haehn
Original Path: trunk/Modules/EMSegment/Testing
ENH: EMSegment4: Added some workflow steps and use the new CMake variables. 



Revision 16690 - Directory Listing
Modified Wed Jun 15 18:44:31 2011 UTC (6 years, 4 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
ENH: Adding testing data for Lesion-Exp

Revision 16688 - Directory Listing
Modified Mon Jun 13 13:31:34 2011 UTC (6 years, 4 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
ENH: Added new bias correction flags

Revision 16660 - Directory Listing
Modified Fri May 27 22:17:23 2011 UTC (6 years, 4 months ago) by haehn
Original Path: trunk/Modules/EMSegment/Testing
ENH: EMSegment4: Tcl Code Execution now works.

 - added new test for the vtkSlicerCommonInterface to check if Tcl code can run properly on Slicer3 and Slicer4
 - Untied the GUI from GenericTask.tcl by replacing calls to GetTemporaryDirectory and GetPluginsDir to equivalent calls in the EMLogic
 - added methodhandler to handle tcl through python code in Slicer4 properly



Revision 16653 - Directory Listing
Modified Thu May 26 00:09:16 2011 UTC (6 years, 4 months ago) by haehn
Original Path: trunk/Modules/EMSegment/Testing
ENH: EMSegment4: Work on running the EMSegmentCommandlineTool in a Slicer4 environment.
 
  - copy the tasks etc. to the appropriate place 
  - renamed GetTclInterpreter in the SlicerCommonInterface to Startup()
  - initialize qSlicerApplication properly in Startup()
  - added StringHolder pattern to properly pass the temporary directory in SlicerCommonInterface
  - cleaned some string building in the EMLogic



Revision 16643 - Directory Listing
Modified Mon May 23 20:32:04 2011 UTC (6 years, 4 months ago) by haehn
Original Path: trunk/Modules/EMSegment/Testing
ENH: Modified the EMSegment Tests so that they can run in a Slicer4 environment.


Revision 16630 - Directory Listing
Modified Wed May 18 17:35:30 2011 UTC (6 years, 5 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
ENH: Add local tests

Revision 16595 - Directory Listing
Modified Tue May 10 15:41:13 2011 UTC (6 years, 5 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
ENH: Add AtlasCreator test , add a local test to compare results

Revision 16580 - Directory Listing
Modified Fri May 6 16:38:06 2011 UTC (6 years, 5 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
BUG: Set FAIL_REGULAR_EXPRESSION for EMSegCL_Task_HumanEye_LogMean tests

Revision 16551 - Directory Listing
Modified Tue May 3 17:05:36 2011 UTC (6 years, 5 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
BUG: Added entry AMFSmoothing

Revision 16543 - Directory Listing
Modified Mon May 2 16:19:16 2011 UTC (6 years, 5 months ago) by haehn
Original Path: trunk/Modules/EMSegment/Testing
ENH: EMSegment:

 - the old KWLogic is now integrated in the real EMSegmentLogic
 - modified the GUI and the tcl files accordingly
 - the EMSegmentLogic uses the TclConnector functionality to run Tcl code or to interact with the Tcl interpreter
 - other code dependent on KWWidgets was moved to the Slicer3Helper
 - finally deleted the KWLogic class



Revision 16521 - Directory Listing
Modified Thu Apr 28 14:59:39 2011 UTC (6 years, 5 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
ENH: Use ./CMake/MIDAS.cmake instead of ./Applications/CLI/BRAINSTools/BuildScripts/MIDAS.cmake

Revision 16518 - Directory Listing
Modified Thu Apr 28 03:53:26 2011 UTC (6 years, 5 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
BUG: Use a leading ':' and change ';' to ':' because of midas bug

Revision 16515 - Directory Listing
Modified Thu Apr 28 01:42:01 2011 UTC (6 years, 5 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
BUG: add --disableMultithreading -1

Revision 16513 - Directory Listing
Modified Wed Apr 27 23:43:53 2011 UTC (6 years, 5 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
ENH: replace | by ;

Revision 16511 - Directory Listing
Modified Wed Apr 27 22:27:01 2011 UTC (6 years, 5 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
ENH: Replace | by ;

Revision 16506 - Directory Listing
Modified Wed Apr 27 21:41:50 2011 UTC (6 years, 5 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
ENH: update mrml file

Revision 16505 - Directory Listing
Modified Wed Apr 27 21:41:13 2011 UTC (6 years, 5 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
ENH: update mrml file

Revision 16491 - Directory Listing
Modified Tue Apr 26 03:05:49 2011 UTC (6 years, 5 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
ENH: Added Human Eye tests

Revision 16449 - Directory Listing
Modified Tue Apr 19 21:08:05 2011 UTC (6 years, 6 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
ENH: Moved EMSegmenter/KWWidgets configuration code into KWWidgets folder

Revision 16400 - Directory Listing
Modified Thu Apr 14 02:40:05 2011 UTC (6 years, 6 months ago) by pohl
Original Path: trunk/Modules/EMSegment/Testing
BUG: Removed Leak so that vtkEMSegmentMRMLManagerTest runs successfully again

Revision 16375 - Directory Listing
Modified Mon Apr 11 14:46:21 2011 UTC (6 years, 6 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
ENH: Update mrml file so that test 'EMSegMRML_DiffReadWriteNodes' doesn't fail anymore

Revision 16374 - Directory Listing
Modified Mon Apr 11 14:35:13 2011 UTC (6 years, 6 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
BUG: Set the right path for test 'EMSegMRML_DiffReadWriteNodes'

Revision 16370 - Directory Listing
Modified Fri Apr 8 23:14:16 2011 UTC (6 years, 6 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
ENH: Don't run CMTK tests per default

Revision 16361 - Directory Listing
Modified Fri Apr 8 19:27:42 2011 UTC (6 years, 6 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
ENH: Added skull stripped atlas template

Revision 16359 - Directory Listing
Modified Fri Apr 8 18:31:32 2011 UTC (6 years, 6 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
ENH: Update mrml files

Revision 16341 - Directory Listing
Modified Thu Apr 7 04:04:54 2011 UTC (6 years, 6 months ago) by pohl
Original Path: trunk/Modules/EMSegment/Testing
BUG: Due to changes in mrml structure - i changed the mrml file itself

Revision 16338 - Directory Listing
Modified Wed Apr 6 23:28:04 2011 UTC (6 years, 6 months ago) by pohl
Original Path: trunk/Modules/EMSegment/Testing
BUG: Fixed leak in vtkEMSegmentMRMLManager.cxx and updated vtkEMSegmentMRMLManagerTest.cxx so that the test would run through again

Revision 16333 - Directory Listing
Modified Wed Apr 6 17:15:24 2011 UTC (6 years, 6 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
ENH: Disable old tutorial tests

Revision 16332 - Directory Listing
Modified Wed Apr 6 16:50:43 2011 UTC (6 years, 6 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
ENH: Add test for task MRI-Human-Brain-Exp

Revision 16328 - Directory Listing
Modified Tue Apr 5 23:14:48 2011 UTC (6 years, 6 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
ENH: Update mrml files

Revision 16320 - Directory Listing
Modified Tue Apr 5 14:23:42 2011 UTC (6 years, 6 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
BUG: Update CT-Hand-Bone task because of API change in EMSegment MRML manager

Revision 16309 - Directory Listing
Modified Mon Apr 4 02:51:52 2011 UTC (6 years, 6 months ago) by pohl
Original Path: trunk/Modules/EMSegment/Testing
ENH: Seperated KW from rest to simplify transition to Slicer4

Revision 16301 - Directory Listing
Modified Sun Apr 3 14:44:23 2011 UTC (6 years, 6 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
BUG: Don't run local tests per default

Revision 16299 - Directory Listing
Modified Sun Apr 3 05:37:11 2011 UTC (6 years, 6 months ago) by pohl
Original Path: trunk/Modules/EMSegment/Testing
ENH: Full Parcellation Works now with CMTK

Revision 16298 - Directory Listing
Modified Sat Apr 2 23:03:12 2011 UTC (6 years, 6 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
ENH: Update test atlas creator task

Revision 16295 - Directory Listing
Modified Sat Apr 2 17:28:38 2011 UTC (6 years, 6 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
ENH: Update test

Revision 16294 - Directory Listing
Modified Sat Apr 2 02:29:08 2011 UTC (6 years, 6 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
BUG: Fix typo in filename

Revision 16293 - Directory Listing
Modified Sat Apr 2 02:19:49 2011 UTC (6 years, 6 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
BUG: use the right order for the --atlasVolumeFileNames option

Revision 16285 - Directory Listing
Modified Fri Apr 1 22:24:28 2011 UTC (6 years, 6 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
ENH: Removed redundant test mrml files - use original mrml files instead

Revision 16279 - Directory Listing
Modified Fri Apr 1 05:50:07 2011 UTC (6 years, 6 months ago) by pohl
Original Path: trunk/Modules/EMSegment/Testing
ENH: Reduced mrml structure vtkMRMLEMSTreeParametersNode is only in there still for legacy purposes

Revision 16245 - Directory Listing
Modified Wed Mar 23 19:42:36 2011 UTC (6 years, 6 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
ENH: Added a test script to test the atlas creator

Revision 16226 - Directory Listing
Modified Mon Mar 21 20:56:04 2011 UTC (6 years, 6 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
ENH: consistent usage of _WIN32 (instead of WIN32) in C/C++ code

Revision 16203 - Directory Listing
Modified Wed Mar 16 18:30:54 2011 UTC (6 years, 7 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
BUG: fixed Memory leak: Extrema

Revision 16073 - Directory Listing
Modified Fri Feb 18 20:28:28 2011 UTC (6 years, 7 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
ENH: Add tests for different scalartypes

Revision 16034 - Directory Listing
Modified Mon Feb 14 16:14:08 2011 UTC (6 years, 8 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
ENH: Added tests

Revision 15993 - Directory Listing
Modified Fri Feb 11 03:06:12 2011 UTC (6 years, 8 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
ENH: Simplified all mrml test files

Revision 15992 - Directory Listing
Modified Fri Feb 11 02:52:49 2011 UTC (6 years, 8 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
BUG: Set correct RegistrationType

Revision 15981 - Directory Listing
Modified Thu Feb 10 00:07:00 2011 UTC (6 years, 8 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
ENH: Change default registration type to CMTK

Revision 15977 - Directory Listing
Modified Wed Feb 9 22:17:37 2011 UTC (6 years, 8 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
ENH: Added fast running tests - using CMTK and BRAINS

Revision 15969 - Directory Listing
Modified Tue Feb 8 23:21:51 2011 UTC (6 years, 8 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
ENH: Now it is possible to choose between different registration packages

Revision 15951 - Directory Listing
Modified Sun Feb 6 18:11:11 2011 UTC (6 years, 8 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
BUG: fixed bug in test EMSegCL_IntermediateResults: 'UpdateScene: error getting 0th storage node'

Revision 15942 - Directory Listing
Modified Sun Feb 6 00:41:11 2011 UTC (6 years, 8 months ago) by pohl
Original Path: trunk/Modules/EMSegment/Testing
ENH: Simplified EMSegmenters MRML Structure in preperation for Slicer 4

Revision 15940 - Directory Listing
Modified Sat Feb 5 23:53:19 2011 UTC (6 years, 8 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
ENH: Added MIDAS keys

Revision 15939 - Directory Listing
Modified Sat Feb 5 23:17:38 2011 UTC (6 years, 8 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
ENH: Added optional tests to compare segmentation results

Revision 15938 - Directory Listing
Modified Sat Feb 5 22:58:11 2011 UTC (6 years, 8 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
BUG: compare function returns error rate

Revision 15937 - Directory Listing
Modified Sat Feb 5 22:55:58 2011 UTC (6 years, 8 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
ENH: Adding MIDAS keys

Revision 15936 - Directory Listing
Modified Sat Feb 5 20:38:58 2011 UTC (6 years, 8 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
ENH: Add functionality to compare segmentation results

Revision 15919 - Directory Listing
Modified Fri Feb 4 16:32:17 2011 UTC (6 years, 8 months ago) by pohl
Original Path: trunk/Modules/EMSegment/Testing
BUG: Cleaned up registration Type

Revision 15894 - Directory Listing
Modified Tue Feb 1 20:59:32 2011 UTC (6 years, 8 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
ENH: Added comment how to use a HTTPHandler from SlicerApplication

Revision 15874 - Directory Listing
Modified Mon Jan 31 21:18:59 2011 UTC (6 years, 8 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
ENH: Test remote IO functionality needed by the EMSegmenter

Revision 15816 - Directory Listing
Modified Mon Jan 24 20:55:11 2011 UTC (6 years, 8 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
BUG: specify also a directory for --resultVolumeFileName, otherwise it would try to overwrite the directory which is specified in the mrml scene

Revision 15814 - Directory Listing
Modified Mon Jan 24 20:34:09 2011 UTC (6 years, 8 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
ENH: Write results into platform independent temporary directory

Revision 15812 - Directory Listing
Modified Mon Jan 24 20:28:27 2011 UTC (6 years, 8 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
BUG: Reverse-merging r15811 through r15042 into 'VolumeData/segmentationResult_small.mhd'

Revision 15773 - Directory Listing
Modified Sun Jan 16 17:31:00 2011 UTC (6 years, 9 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
BUG: Add test for MRI-Human-Brain-Full-Parcellation

Revision 15772 - Directory Listing
Modified Sun Jan 16 17:29:53 2011 UTC (6 years, 9 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
BUG: Add test for MRI-Human-Brain-Full-Parcellation

Revision 15771 - Directory Listing
Modified Sun Jan 16 17:28:41 2011 UTC (6 years, 9 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
BUG: Add test for MRI-Human-Brain-Full-Parcellation

Revision 15750 - Directory Listing
Modified Mon Jan 10 17:30:53 2011 UTC (6 years, 9 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
ENH: Added test data for CT-Hand-Bone task

Revision 15739 - Directory Listing
Modified Sat Jan 8 00:25:14 2011 UTC (6 years, 9 months ago) by lchauvin
Original Path: trunk/Modules/EMSegment/Testing
ENH: Add CaptureBetaProbe and UDPServer modules, and merge NeuroNav from NAMIC SandBox and from Slicer trunk

Revision 15667 - Directory Listing
Modified Fri Dec 17 18:13:22 2010 UTC (6 years, 10 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
BUG: Turn on bias field correction

Revision 15663 - Directory Listing
Modified Thu Dec 16 23:06:03 2010 UTC (6 years, 10 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
ENH: Added tests for the Non-Human-Primate task

Revision 15661 - Directory Listing
Modified Thu Dec 16 20:17:03 2010 UTC (6 years, 10 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
ENH: Added tests for the MRI-Human-Brain task

Revision 15660 - Directory Listing
Modified Thu Dec 16 19:22:03 2010 UTC (6 years, 10 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
ENH: Added tests for the MRI-Human-Brain-Parcellation task

Revision 15648 - Directory Listing
Modified Mon Dec 13 20:51:03 2010 UTC (6 years, 10 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
ENH: Add a resample test

Revision 15605 - Directory Listing
Modified Sat Dec 4 07:01:54 2010 UTC (6 years, 10 months ago) by pohl
Original Path: trunk/Modules/EMSegment/Testing
ENH: Integration of subparcellation capabilties Part II

Revision 15565 - Directory Listing
Modified Tue Nov 23 21:59:46 2010 UTC (6 years, 10 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
ENH: Added testcase for Non-Human Primate task

Revision 15537 - Directory Listing
Modified Sat Nov 20 23:18:28 2010 UTC (6 years, 10 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
ENH: Added test case for task MRI Human Head

Revision 15536 - Directory Listing
Modified Sat Nov 20 22:35:46 2010 UTC (6 years, 10 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
ENH: Added test cases for task MRI-Human-Brain-Parcellation

Revision 15415 - Directory Listing
Modified Wed Nov 3 02:17:04 2010 UTC (6 years, 11 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
ENH: Add test for option --intermediateResultsDirectory

Revision 15373 - Directory Listing
Modified Thu Oct 28 20:44:19 2010 UTC (6 years, 11 months ago) by pohl
Original Path: trunk/Modules/EMSegment/Testing
BUG: Leak in vtkEMSegmentBlackBoxSegmentationTest.cxx caused test to fail - now run it without setting vtkSlicerApplication and vtkSlicerApplicationLogic

Revision 15364 - Directory Listing
Modified Thu Oct 28 06:11:07 2010 UTC (6 years, 11 months ago) by pohl
Original Path: trunk/Modules/EMSegment/Testing
BUG: Tried to modify BRAINSFit paramters according to Hans but did not work so I changed them back again, created a function for DataIO, moved some functions from MRMLManager to Logic, adjusted the tests so that they would compile with new structure, included capabilities for propagating error messages from EMSegmenter to GUI via pop up window

Revision 15348 - Directory Listing
Modified Tue Oct 26 22:32:24 2010 UTC (6 years, 11 months ago) by domibel
Original Path: trunk/Modules/EMSegment/Testing
BUG: Since we are accessing our atlas volume files via the IO Manager we cannot use the --atlasVolumeFileNames anymore

Revision 15240 - Directory Listing
Modified Tue Oct 19 04:03:03 2010 UTC (7 years ago) by pohl
Original Path: trunk/Modules/EMSegment/Testing
BUG: Fixed bugs related to the EMSegmenter

Revision 15041 - Directory Listing
Modified Wed Sep 22 18:55:34 2010 UTC (7 years ago) by pieper
Original Path: trunk/Modules/EMSegment/Testing
ENH: make Slicer3/trunk be a copy of Slicer-3-6 branch.  New slicer4 development has moved to http://svn.slicer.org/Slicer4/trunk.  Use the Slicer3 trunk only for slicer3 maint purposes.

See this desription for details:

http://massmail.spl.harvard.edu/public-archives/slicer-devel/2010/005338.html


Revision 13264 - Directory Listing
Modified Thu May 6 14:12:54 2010 UTC (7 years, 5 months ago) by pieper
Original Path: branches/Slicer-3-6/Modules/EMSegment/Testing
ENH: creating release branche for Slicer-3-6

Revision 12567 - Directory Listing
Modified Wed Mar 31 19:47:06 2010 UTC (7 years, 6 months ago) by pohl
Original Path: trunk/Modules/EMSegment/Testing
ENH: Rolled back functionality to Slicer3.4 (r9240) and only included bug fixes

Revision 12566 - Directory Listing
Modified Wed Mar 31 19:45:18 2010 UTC (7 years, 6 months ago) by pohl
Original Path: trunk/Modules/EMSegment/Testing
ENH: Rolled back functionality to Slicer3.4 (r9240) and only included bug fixes

Revision 12069 - Directory Listing
Modified Tue Feb 9 01:17:44 2010 UTC (7 years, 8 months ago) by lassoan
Original Path: trunk/Modules/EMSegment/Testing
BUG: Fixed launcher error (non-QT Slicer doesn't start because missing QT paths)
ENH: All launcher scripts are in procedures and errors are captured and properly reported (more robust to any script error)
ENH: New launcher option (--no-error-popup) to not display errors in a popup (log only)
ENH: Use --no-error-popup for EMSegment tests that are expected to fail (to not confuse the user with error popups)
ENH: Added new slicer variable (::LAUNCHER_REPORT_VTK_ERRORS) to allow reporting of VTK errors as failed tests on the dashboard. By default it is turned off now. Set it to ON to capture more errors.

Revision 11843 - Directory Listing
Modified Thu Jan 28 22:05:16 2010 UTC (7 years, 8 months ago) by jcfr
Original Path: trunk/Modules/EMSegment/Testing
COMP: Fix various compilation warnings (unused, ...)

Note: size_t is an unsigned int, it means there is no need to check if
it's value is negative.

Revision 11823 - Directory Listing
Modified Thu Jan 28 09:09:23 2010 UTC (7 years, 8 months ago) by jcfr
Original Path: trunk/Modules/EMSegment/Testing
COMP: Fix various compilation warning (hidden virtual method, unused variable, ...)

Note1: Also moved vtkSlicerApplication.h up in the header include order
otherwise, when compiled with QT, it outputs that message:

#error qdatastream.h must be included before any header file that defines Status

Note2:
To fix such warning,
"base class‘base_class’should be explicitly initialized in the copy constructor"

the compy ctor and the '=' operator has been set as private member

Revision 11508 - Directory Listing
Modified Mon Jan 4 19:10:35 2010 UTC (7 years, 9 months ago) by ibanez
Original Path: trunk/Modules/EMSegment/Testing
ENH: Removing .NoDartCoverage files and replacing them with the
     CTEST_CUSTOM_COVERAGE_EXCLUDE variable in the CTestCustom.cmake.in file.



Revision 11362 - Directory Listing
Modified Mon Dec 21 21:14:08 2009 UTC (7 years, 9 months ago) by ibanez
Original Path: trunk/Modules/EMSegment/Testing
ENH: Adding .NoDartCoverage files inside the Testing subdirectories
     in order to exclude them from the computation of code coverage.


Revision 11250 - Directory Listing
Modified Fri Dec 11 01:43:50 2009 UTC (7 years, 10 months ago) by jcfr
Original Path: trunk/Modules/EMSegment/Testing
ENH: Update vtkEventBroker to follow a more robust singleton pattern.

Since we are sure to have on instance per-process, all client should call
vtkEventBroker::GetInstance() and no bother using New/Delete

It follow now the nifty counter idiom:
http://en.wikibooks.org/wiki/More_C%2B%2B_Idioms/Nifty_Counter

Largely inspired from the code of:
VTK/Common/vtkOutputWindow
VTK/Utilities/kwsys/SystemTools

It's also possible to use New (that way reference counting will be used)
Doing so the caller will be responsible to call the matching Delete.
For example, in Slicer3.cxx, TCL interpreter got a reference using New.
For that reason, we call the corresponding Delete.

It's also worth reading:
http://www.parashift.com/c++-faq-lite/ctors.html#faq-10.12

Revision 11114 - Directory Listing
Modified Wed Dec 2 14:35:21 2009 UTC (7 years, 10 months ago) by fedorov
Original Path: trunk/Modules/EMSegment/Testing
BUG: fixing cmake 2.8 warning


Revision 11068 - Directory Listing
Modified Sat Nov 28 15:19:00 2009 UTC (7 years, 10 months ago) by pieper
Original Path: trunk/Modules/EMSegment/Testing
COMP: shorten file names to avoid path length problems when running cpack 2.8 on windows

Revision 10426 - Directory Listing
Modified Tue Sep 8 20:52:14 2009 UTC (8 years, 1 month ago) by hjohnson
Original Path: trunk/Modules/EMSegment/Testing
COMP: With the conversion to CMake version 2.6, the variables CMAKE_RUNTIME_OUTPUT_DIRECTORY CMAKE_LIBRARY_OUTPUT_DIRECTORY CMAKE_ARCHIVE_OUTPUT_DIRECTORY should be used instead of EXECUTABLE_OUTPUT_PATH and LIBRARY_OUTPUT_PATH.

Revision 10369 - Directory Listing
Modified Thu Aug 27 04:56:45 2009 UTC (8 years, 1 month ago) by sylvain
Original Path: trunk/Modules/EMSegment/Testing
BUG: disable three tests temporarily. will be fixed when I am back from Belgium.

Revision 10327 - Directory Listing
Modified Fri Aug 21 21:12:09 2009 UTC (8 years, 1 month ago) by sylvain
Original Path: trunk/Modules/EMSegment/Testing
BUG: tests were failing because of the vtkTeem library included in Slicer3_Libs_LIBRARIES

Revision 10276 - Directory Listing
Modified Mon Aug 17 16:27:22 2009 UTC (8 years, 2 months ago) by sylvain
Original Path: trunk/Modules/EMSegment/Testing
BUG: build and run new segmentation parameters failed. note that new test has been renamed

Revision 10275 - Directory Listing
Modified Mon Aug 17 15:43:01 2009 UTC (8 years, 2 months ago) by sylvain
Original Path: trunk/Modules/EMSegment/Testing
ENH: remove renamed test. test name had a typo

Revision 10274 - Directory Listing
Modified Mon Aug 17 15:41:55 2009 UTC (8 years, 2 months ago) by sylvain
Original Path: trunk/Modules/EMSegment/Testing
ENH: rename test new segmentation parameters. typo in test name

Revision 10273 - Directory Listing
Modified Mon Aug 17 15:35:35 2009 UTC (8 years, 2 months ago) by sylvain
Original Path: trunk/Modules/EMSegment/Testing
BUG: preprocessing manager test was failing

Revision 8366 - Directory Listing
Modified Tue Jan 13 13:31:09 2009 UTC (8 years, 9 months ago) by lorensen
Original Path: trunk/Modules/EMSegment/Testing
BUG: vtkEventBroker::GetInstance()->Delete() must be done after any other calls that may process events.

Revision 7961 - Directory Listing
Modified Sun Nov 23 19:01:51 2008 UTC (8 years, 10 months ago) by lorensen
Original Path: trunk/Modules/EMSegment/Testing
COMP: various warnings.

Revision 7595 - Directory Listing
Modified Fri Sep 19 15:11:59 2008 UTC (9 years ago) by hyang
Original Path: trunk/Modules/EMSegment/Testing
ENH: Enable user to specify a color for each leaf node of the anatomical tree (step 2 of EMSegment). Add some GUI components to vtkEMSegmentAnatomicalStructureStep. Add XML IO of colormap parameter to vtkMRMLEMSGlobalParametersNode and vtkEMSegmentMRMLManager.

Revision 7534 - Directory Listing
Modified Fri Sep 5 15:17:52 2008 UTC (9 years, 1 month ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
ENH: add extra output to testing template

Revision 6818 - Directory Listing
Modified Thu May 22 15:56:54 2008 UTC (9 years, 4 months ago) by pieper
Original Path: trunk/Modules/EMSegment/Testing
COMP: fix test paths for EMSegment

Revision 6779 - Directory Listing
Modified Tue May 20 14:01:07 2008 UTC (9 years, 5 months ago) by pieper
Original Path: trunk/Modules/EMSegment/Testing
COMP: divide EMsegment test paths into those which only exist in the build tree and those which are installed as part of slicer

Revision 6772 - Directory Listing
Modified Tue May 20 07:29:06 2008 UTC (9 years, 5 months ago) by barre
Original Path: trunk/Modules/EMSegment/Testing
ENH: Slicer3 Spring Installation Clean Up

Revision 6561 - Directory Listing
Modified Mon Apr 28 12:18:33 2008 UTC (9 years, 5 months ago) by pieper
Original Path: trunk/Modules/EMSegment/Testing
COMP: cast 0 to vtkIndent to avoid build error on picky compilers

Revision 6536 - Directory Listing
Modified Thu Apr 24 14:27:34 2008 UTC (9 years, 5 months ago) by pieper
Original Path: trunk/Modules/EMSegment/Testing
ENH: improvements to the event broker, and conversion of many internal classes to use the event broker.  See http://wiki.na-mic.org/Wiki/index.php/Slicer3:EventBroker

Revision 6397 - Directory Listing
Modified Fri Apr 4 14:49:48 2008 UTC (9 years, 6 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
BUG: Fix problems with adding and removing channels in EMSegmenter, specifically bugs 179 and 181

Revision 5935 - Directory Listing
Modified Sun Feb 24 15:18:08 2008 UTC (9 years, 7 months ago) by pieper
Original Path: trunk/Modules/EMSegment/Testing
COMP: apply patches provided by Hans

Revision 5245 - Directory Listing
Modified Tue Dec 18 15:20:28 2007 UTC (9 years, 10 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
COMP: fix windows compiler error
STYLE: better comments for image downsample pyramid
COMP: disable registation tests---not cross platform


Revision 5240 - Directory Listing
Modified Tue Dec 18 05:28:19 2007 UTC (9 years, 10 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
ENH: add flag to bypass registration if it was already computed

Revision 5226 - Directory Listing
Modified Sun Dec 16 18:12:57 2007 UTC (9 years, 10 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
BUG: fix filenames in test files

Revision 5211 - Directory Listing
Modified Fri Dec 14 19:15:11 2007 UTC (9 years, 10 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
BUG: standardize random seed for registration sampling so tests work accross machines


Revision 5208 - Directory Listing
Modified Fri Dec 14 18:00:20 2007 UTC (9 years, 10 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
ENH: add EMSeg reg testing


Revision 5207 - Directory Listing
Modified Fri Dec 14 17:53:52 2007 UTC (9 years, 10 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
ENH: update EMSeg test data for reg testing


Revision 5205 - Directory Listing
Modified Fri Dec 14 17:43:18 2007 UTC (9 years, 10 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
ENH: add fast and slow registration parameters
ENH: add EMSeg test with registration


Revision 5202 - Directory Listing
Modified Fri Dec 14 16:46:08 2007 UTC (9 years, 10 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
ENH: use more intelligent registration parameters
ENH: fill in EMSeg parameters for test
ENH: add test gold standard images (not correct yet...)


Revision 5198 - Directory Listing
Modified Fri Dec 14 07:39:54 2007 UTC (9 years, 10 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
ENH: fill out first (mostly) working version the rigid and bspline registration in EMSeg


Revision 5196 - Directory Listing
Modified Fri Dec 14 01:57:44 2007 UTC (9 years, 10 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
ENH: adding EMSeg test set

Revision 5193 - Directory Listing
Modified Fri Dec 14 01:27:38 2007 UTC (9 years, 10 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
ENH: add test data for EMSeg Registration

Revision 5003 - Directory Listing
Modified Thu Nov 29 19:38:58 2007 UTC (9 years, 10 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
COMP: silence compiler warnings

Revision 5002 - Directory Listing
Modified Thu Nov 29 19:38:01 2007 UTC (9 years, 10 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
COMP: silence compiler warning

Revision 4931 - Directory Listing
Modified Sun Nov 25 22:15:28 2007 UTC (9 years, 10 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
ENH: change EMSeg parameter tree to use double links (add parent to child links) for MRML recursive copy as well as performence

Revision 4930 - Directory Listing
Modified Sun Nov 25 21:52:15 2007 UTC (9 years, 10 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
ENH: add output to EMSeg test

Revision 4857 - Directory Listing
Modified Fri Nov 16 22:00:44 2007 UTC (9 years, 11 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
ENH: added start of preprocessing tests

Revision 4316 - Directory Listing
Modified Wed Sep 12 17:16:22 2007 UTC (10 years, 1 month ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
BUG: closing tag in XML test file was incorrect; a recent change uncovered this as an error

Revision 4315 - Directory Listing
Modified Wed Sep 12 17:11:40 2007 UTC (10 years, 1 month ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
BUG: closing tag in XML test file was incorrect; a recent change uncovered this as an error

Revision 4302 - Directory Listing
Modified Tue Sep 11 21:30:19 2007 UTC (10 years, 1 month ago) by alexy
Original Path: trunk/Modules/EMSegment/Testing
ENH: reworked volume display to separate classes and include viz pipeline

Revision 4293 - Directory Listing
Modified Tue Sep 11 15:46:35 2007 UTC (10 years, 1 month ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
ENH: disable mrml tests for EMSEG

Revision 3998 - Directory Listing
Modified Fri Aug 3 13:25:58 2007 UTC (10 years, 2 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
ENH: modify EMSeg test to not rely on stable volume mrml nodes

Revision 3954 - Directory Listing
Modified Fri Jul 27 15:53:34 2007 UTC (10 years, 2 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
ENH: remove temporary em test data after test is run

Revision 3953 - Directory Listing
Modified Fri Jul 27 15:50:07 2007 UTC (10 years, 2 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
ENH: update em test to reflect image compression key/value pair added to image storage node

Revision 3952 - Directory Listing
Modified Fri Jul 27 15:22:37 2007 UTC (10 years, 2 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
ENH: add disableCompression flag to emsegment command line executable to force the program to write the segmentation result uncompressed.  Within mrml the default was changed to write images in compressed format when available.  This caused several emsegment tests to fail.  With this fix the tests should pass again.

Revision 3729 - Directory Listing
Modified Thu Jun 28 15:51:44 2007 UTC (10 years, 3 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
ENH: add atlas from command line

Revision 3626 - Directory Listing
Modified Wed Jun 20 20:40:05 2007 UTC (10 years, 4 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
ENH: update test files to add MRML selectable node

Revision 3613 - Directory Listing
Modified Sat Jun 16 18:56:51 2007 UTC (10 years, 4 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
ENH: added EMSeg ClassInteractionMatrices to MRML/Logic

Revision 3603 - Directory Listing
Modified Fri Jun 15 00:01:13 2007 UTC (10 years, 4 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
ENH: remove srand from testing

Revision 3589 - Directory Listing
Modified Wed Jun 13 22:59:54 2007 UTC (10 years, 4 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
ENH: start with correct segmentation results for test dataset

Revision 3585 - Directory Listing
Modified Wed Jun 13 17:26:10 2007 UTC (10 years, 4 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
ENH: added more EMSeg MRMLManager tests

Revision 3568 - Directory Listing
Modified Tue Jun 12 14:27:22 2007 UTC (10 years, 4 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
ENH: added doc for manual gui testing

Revision 3567 - Directory Listing
Modified Tue Jun 12 14:20:50 2007 UTC (10 years, 4 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
STYLE: spacing/alignment

Revision 3565 - Directory Listing
Modified Tue Jun 12 11:30:04 2007 UTC (10 years, 4 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
BUG: strip backslashes from argument to fix test for windows

Revision 3563 - Directory Listing
Modified Tue Jun 12 02:24:43 2007 UTC (10 years, 4 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
ENH: added mrml manager set/get test (incomplete)

Revision 3548 - Directory Listing
Modified Mon Jun 11 13:01:04 2007 UTC (10 years, 4 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
ENH: mark testing vars as advanced in cmake cahce

Revision 3538 - Directory Listing
Modified Sat Jun 9 03:15:07 2007 UTC (10 years, 4 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
COMP: adjust cmake required version in test script

Revision 3537 - Directory Listing
Modified Fri Jun 8 21:44:17 2007 UTC (10 years, 4 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
ENH: updated EMSeg test to combine run/diff/rm steps

Revision 3527 - Directory Listing
Modified Fri Jun 8 14:14:55 2007 UTC (10 years, 4 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
BUG: fix EMSeg intensity normalization test

Revision 3525 - Directory Listing
Modified Fri Jun 8 12:31:52 2007 UTC (10 years, 4 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
BUG: fix path on cmake command

Revision 3523 - Directory Listing
Modified Fri Jun 8 04:33:53 2007 UTC (10 years, 4 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
ENH: add clone target and atlas volumes (for preprocessing)
ENH: connect normalization filter to pipeline---works for first time


Revision 3521 - Directory Listing
Modified Fri Jun 8 04:29:07 2007 UTC (10 years, 4 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
ENH: added memory leak test (disabled by default)


Revision 3515 - Directory Listing
Modified Thu Jun 7 19:48:34 2007 UTC (10 years, 4 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
ENH: reorganize EMSeg tests---make tests that write and diff multiplatform

Revision 3500 - Directory Listing
Modified Thu Jun 7 15:40:06 2007 UTC (10 years, 4 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
ENH: added intensity normalization parameter api to mrml manager

Revision 3498 - Directory Listing
Modified Thu Jun 7 03:36:47 2007 UTC (10 years, 4 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
ENH: EMSegment major surgery...
ENH: created EMSegment MRMLManager facade class to manage/hide MRML node complexity
ENH: added working data node to get ready for intensity normalized images
ENH: now intensity sample points are stored in mrml and can be reloaded
ENH: minor bug fixes and improved warnings



Revision 3467 - Directory Listing
Modified Mon Jun 4 15:12:13 2007 UTC (10 years, 4 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
ENH: added EMSeg test

Revision 3466 - Directory Listing
Modified Mon Jun 4 15:11:32 2007 UTC (10 years, 4 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
ENH: move intensity normalization parameters to global parameters
ENH: add working data node to segmenter node


Revision 3447 - Directory Listing
Modified Thu May 31 20:43:26 2007 UTC (10 years, 4 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
BUG: error in CMake if statement

Revision 3444 - Directory Listing
Modified Thu May 31 12:30:32 2007 UTC (10 years, 4 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
ENH: added EMSegment MRML tests

Revision 3442 - Directory Listing
Modified Thu May 31 04:08:08 2007 UTC (10 years, 4 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
BUG: disable extra EMSeg test---it was accitentally enabled


Revision 3436 - Directory Listing
Modified Wed May 30 23:26:03 2007 UTC (10 years, 4 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
ENH: incremental update to EMSeg commandline---recovery from svn database crash

Revision 3434 - Directory Listing
Modified Wed May 30 19:05:18 2007 UTC (10 years, 4 months ago) by pieper
Original Path: trunk/Modules/EMSegment/Testing
BUG: Recover changes lost due to database crash in the server

Revision 3432 - Directory Listing
Modified Thu May 24 14:38:07 2007 UTC (10 years, 4 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
ENH: change test to reflect modified EMSegment mrml node structure

Revision 3408 - Directory Listing
Modified Fri May 18 13:45:43 2007 UTC (10 years, 5 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
ENH: there was a bug fix in command line argument parsing; revert mrml node name in EM test to the old name that includes spaces

Revision 3403 - Directory Listing
Modified Thu May 17 18:37:08 2007 UTC (10 years, 5 months ago) by pieper
Original Path: trunk/Modules/EMSegment/Testing
BUG: fixe path handling on windows

Revision 3368 - Directory Listing
Modified Thu May 10 16:47:48 2007 UTC (10 years, 5 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
ENH: use slicer launcher to start em test on all platforms

Revision 3364 - Directory Listing
Modified Wed May 9 20:23:39 2007 UTC (10 years, 5 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
BUG: remove extra cmake code that caused testing problems for em

Revision 3363 - Directory Listing
Modified Wed May 9 19:02:26 2007 UTC (10 years, 5 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
BUG: cmake changes for fixing em test on windows

Revision 3362 - Directory Listing
Modified Wed May 9 18:46:38 2007 UTC (10 years, 5 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
BUG: fixing CMake issues with EM test

Revision 3346 - Directory Listing
Modified Mon May 7 18:51:42 2007 UTC (10 years, 5 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
ENH: added extra console output for easier debugging

Revision 3344 - Directory Listing
Modified Mon May 7 14:49:54 2007 UTC (10 years, 5 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
ENH: create testing utilities
BUG: clean up memory before exit failure is returned


Revision 3329 - Directory Listing
Modified Thu May 3 20:25:20 2007 UTC (10 years, 5 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
COMP: discontinue bleeding edge VTK feature in EMSeg test, try 2

Revision 3327 - Directory Listing
Modified Thu May 3 19:51:19 2007 UTC (10 years, 5 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
COMP: discontinue bleeding edge VTK feature in EMSeg test

Revision 3325 - Directory Listing
Modified Thu May 3 18:44:16 2007 UTC (10 years, 5 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
ENH: added black box EMSegment test

Revision 1975 - Directory Listing
Added Tue Jan 2 03:00:49 2007 UTC (10 years, 9 months ago) by davisb
Original Path: trunk/Modules/EMSegment/Testing
ENH: add testing dir (currently empty)


An Exception Has Occurred

Python Traceback

Traceback (most recent call last):
  File &quot;/usr/lib/viewvc/lib/viewvc.py&quot;, line 4844, in main
    request.run_viewvc()
  File &quot;/usr/lib/viewvc/lib/viewvc.py&quot;, line 402, in run_viewvc
    self.view_func(self)
  File &quot;/usr/lib/viewvc/lib/viewvc.py&quot;, line 2950, in view_log
    generate_page(request, &quot;log&quot;, data)
  File &quot;/usr/lib/viewvc/lib/viewvc.py&quot;, line 944, in generate_page
    template.generate(server_fp, data)
  File &quot;/usr/lib/viewvc/lib/ezt.py&quot;, line 329, in generate
    self._execute(self.program, ctx)
  File &quot;/usr/lib/viewvc/lib/ezt.py&quot;, line 458, in _execute
    step[0](step[1], ctx)
  File &quot;/usr/lib/viewvc/lib/ezt.py&quot;, line 466, in _cmd_print
    raise Exception(&quot;Unprintable value type for '%s'&quot; % (str(valrefs[0][0])))
Exception: Unprintable value type for 'logsort_hidden_values'