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Sticky Revision:

Revision 25887  Directory Listing
Modified Wed Mar 29 01:01:56 2017 UTC (5 months, 4 weeks ago) by jcfr
BUG: Fix indent in ExecutionModelTourTest input MRML scene

This commit fixes the source files conflicts reported on the dashboard by
updating the input file to account for changes introduced
by r25870 (STYLE: Indentation related changes)

Revision 24948  Directory Listing
Modified Thu Feb 25 16:23:28 2016 UTC (19 months ago) by lassoan
STYLE: Deleted empty directories

Most of them were probably leftovers from git-svn commits.

Revision 24521  Directory Listing
Modified Tue Sep 8 20:49:49 2015 UTC (2 years ago) by jcfr
ENH: Add test for DCMTK private dictionary. See issue #4013

Philips phantom DWI dataset is included. The test runs dcmdump command,
and looks for the description of tag (2001,1003), which should be
DiffusionBFactor, and can only be recognized when private dictionary
support is enabled in DCMTK.

Co-authored-by: Jean-Christophe Fillion-Robin <jchris.fillionr@kitware.com>
Tested-by: Jean-Christophe Fillion-Robin <jchris.fillionr@kitware.com>

From: Andrey Fedorov <fedorov@bwh.harvard.edu>

Revision 23688  Directory Listing
Modified Wed Sep 17 12:40:32 2014 UTC (3 years ago) by jcfr
ENH: Remove unused and outdated tcl scripts.

Revision 23593  Directory Listing
Modified Wed Aug 20 21:26:30 2014 UTC (3 years, 1 month ago) by jcfr
COMP: Removed legacy module AffineRegistration. See #3401

For future reference, code has been moved into a dedicated repository.
See https://github.com/Slicer/Slicer-AffineRegistration

Revision 23589  Directory Listing
Modified Tue Aug 19 15:25:57 2014 UTC (3 years, 1 month ago) by jcfr
BUG: Fix ExecutionModelTour input mrml scene

As explained in in-lined comment associated with r23587,
readWriteAsTransformToParent is not present anymore in current scenes,
because transforms are always written as TransformFromParent

Revision 23337  Directory Listing
Modified Wed Jun 18 04:18:41 2014 UTC (3 years, 3 months ago) by jcfr
BUG: Update ExecutionModelTourTest input scene to include MRML version

This commit updates the test input data to account for commit r23331
including MRML version in the mrml file.

Revision 23121  Directory Listing
Modified Fri May 2 21:49:48 2014 UTC (3 years, 4 months ago) by finetjul
ENH: Add VTK 6 support 1/2

1) Support vtk6 to build system.
http://www.vtk.org/Wiki/VTK/Build_System_Migration
Give users a build option between vtk5 and vtk6.
Solve vtk library python wrapping for VTK 6
Use system zlib (this is a hack)
Use system png (this is a hack)

2) Update dependency projects in superbuild including VTK, CTK, OpenIGTLinkIF, MultiVolumeExplorer.

3) Remove deprecated Macro.
The following two macros were deprecated in VTK 5.0 that were still supported, but have now been eliminated:
vtkTypeRevisionMacro has been replaced with vtkTypeMacro; vtkCxxRevisionMacro has been removed.
http://www.visitusers.org/index.php?title=VTK_6.0_Upgrade

The following two macros were deprecated in VTK 6.0 if VTK_LEGACY_REMOVE is on:
VTK_LARGE_INTEGER and VTK_LARGE_FLOAT
https://github.com/Kitware/VTK/blob/9a0fbb8da1a1701dc1b44c71467b969b3302efad/Common/Core/vtkType.h#L158-159

vtkFloatingPointType is replaced with double.
http://review.source.kitware.com/#/t/1667/

vtkType deprecations
http://www.vtk.org/Wiki/VTK/VTK_6_Migration/vtkType_deprecations

4) Replace SetInput() with SetInputData() and SetInputConnection(), the same kind of functions include SetInput1(), SetInput2(), AddInput() and SetSource().
http://www.vtk.org/Wiki/VTK/VTK_6_Migration/Replacement_of_SetInput

5) Remove GetProducerPort() from vtkDataObject.
http://www.vtk.org/Wiki/VTK/VTK_6_Migration/Removal_of_GetProducerPort

6) Remove Execute
http://www.vtk.org/Wiki/VTK/VTK_6_Migration/Removal_of_Execute

7) Remove SetWholeExtent() from vtkDataObject
http://www.vtk.org/Wiki/VTK/VTK_6_Migration/Removal_of_SetWholeExtent

8) Remove Methods for Manipulating Update Extent
http://www.vtk.org/Wiki/VTK/VTK_6_Migration/Removal_of_Methods_for_Manipulating_Update_Extent

9) Change AllocateOutputData() in vtkImageAlgorithm.
http://www.vtk.org/Wiki/VTK/VTK_6_Migration/Change_to_AllocateOutputData

10) Remove CopyInformation and CopyTypeSpecificInformation from vtkDataObject and vtkImageData.
http://www.vtk.org/Wiki/VTK/VTK_6_Migration/Removal_of_CopyInformation

11) Remove GetPipelineInformation and GetExecutive from vtkDataObject.
http://www.vtk.org/Wiki/VTK/VTK_6_Migration/Removal_of_GetPipelineInformation

12) VTK6 requires #include <vtkVersion.h> to use the VTK_xxx_VERSION preprocessor directives.
http://vtk.org/Wiki/VTK/VTK6/Migration/WikiExamples#Improve

13) Remove Methods for Manipulating Update Extent.
http://www.vtk.org/Wiki/VTK/VTK_6_Migration/Removal_of_Methods_for_Manipulating_Update_Extent.
http://vtk.org/Wiki/VTK/VTK6/Migration/WikiExamples#Improve.

14) Change scalars manipulation functions
http://www.vtk.org/Wiki/VTK/VTK_6_Migration/Changes_to_Scalars_Manipulation_Functions.
http://vtk.org/Wiki/VTK/VTK6/Migration/WikiExamples#Improve.

15) Remove Pipeline Update Methods from vtkDataObject.
http://www.vtk.org/Wiki/VTK/VTK_6_Migration/Removal_of_Update

16) Remove Pipeline Update Methods from vtkDataObject.
http://www.vtk.org/Wiki/VTK/VTK_6_Migration/Removal_of_Update.

17) Refactor functions in vtkMRMLModelNode and sublcasses.

18) Refactor functions in vtkMRMLVolumeNode and its subclasses.
Use ImageDataPort instead of ImageData

Issue #3514

From Yuzheng Zhou <yuzheng.zhou@kitware.com>

Revision 23021  Directory Listing
Modified Wed Mar 26 17:45:15 2014 UTC (3 years, 6 months ago) by hjohnson
STYLE: Remove end of line spaces

Spaces at the end of lines can cause noise in patch sets
when editors or git gobbles them up during other relatively
minor changes to files.

Removing end of line changes makes long term maintenance easier as
well.

When reviewing git histories or patch sets, the "--ignore-space-change"
option can be useful in filtering out changes due only to spacing.

i.e.
git diff HEAD~2 --ignore-space-change

Revision 23008  Directory Listing
Modified Wed Mar 19 17:41:09 2014 UTC (3 years, 6 months ago) by lassoan
ENH: Several fixes and improvements in transform handling

Major fixes:
* Added mechanism to prevent immediate invocation of TransformModified events (similarly to Modified events) to allow atomic changes of transforms and prevent multiple event invocations (fixes #3610, #3611).
* Fixed vtkITKBSplineTransform inverse computation (the bulk component was ignored in the inverse computation due to a shadow variable)
* Fixed DeepCopy of vtkITKBSplineTransform.cxx (InternalDeepCopy method had to be implemented)
* Use vtkTransform's ability to compute inverse transforms instead of keeping separate transforms for forward and inverse transforms (still kept the two member variables in the transform node base class to allow storing of forward and inverse transform if they are both computed, e.g., some Demons registration provides both the forward and inverse transforms as outputs).
* Fixed ReadWriteAsTransformToParent logic in the storage node class (as inverse warp transforms usually cannot be written, the flag should point to the forward transform class). For convenience, the flag is updated automatically when a To/FromParentTransform is set in the transform node.
* Fixed transform node copy: now a true deep copy is performed (earlier only the pointer of the transforms were copied, therefore changing a transform in a node changed the copied node, too)
* Removed vtkMRMLNonlinearTransformNode, as non-linear transforms are not special cases anymore: the base transform class can manage them the same way as linear transforms.
* Changed Get/SetMatrixTransformToParent and Get/SetMatrixTransformFromParent method to make it clear that it makes a copy of the input and output, so changing a matrix is only possible by using the Set... method (and not Get...()->DeepCopy(...)). Kept the old functions to prevent build errors, but they are deprecated and a warning is logged if they are used (as the behavior of the Get... function is changed from a shallow copy to a deep copy). This API change required changing of a lot of file in the Slicer core and extensions.

Minor fixes:
* Made vtkMRMLTransformNode non-abstract: this is the class that can handle arbitrarily complex composite transforms (e.g., grid transform hardened on a bspline transform).
* Fixed invalid NonLinearTransformScene.mrml scene: wrong storage node ref ID caused warnings in the tests
* Changed the Bspline-f-m.tfm test data to include larger bulk component to make errors more detectable
* Added tests for composite transforms (e.g., hardened combination of grid and bspline transform)
* Split the transform node's huge read/write methods to separate smaller methods (one for each transform type)
* Added the option of loading a .mha file as a grid transform

Extensions updated according to the API change: OpenIGTLinkIF, SlicerIGT, SlicerRT, and TransformVisualizer. See details at:
https://github.com/openigtlink/OpenIGTLinkIF/pull/25
https://github.com/SlicerIGT/FiducialRegistrationWizard/pull/14
https://github.com/SlicerIGT/BreachWarning/pull/1
https://github.com/SlicerIGT/PivotCalibration/pull/13
https://github.com/SlicerIGT/TransformFusion/pull/2
https://www.assembla.com/spaces/slicerrt/tickets/563

Tests performed:

* All automatic tests passed (except those that are known to fail in the nightly builds)

* Load MRBrainTumor1 & MRBrainTumor2 sample
* Create model of MRBrainTumor2, threshold=50
* Linear registration with BRAINS (fixed: MRBrainTumor1 & moving: MRBrainTumor2)
* VERIFY: the resampled output image should look the same as the dynamically transformed moving volume, checked on several slices
* Save the transform as tfm from file, load the transform from file, apply the transform to the moving image
* VERIFY: the resampled output image should look the same as the dynamically transformed moving volume
* Apply transform to the model
* VERIFY: model is deformed in the 3D view, aligned with the volume slices
* Harden transform to the model
* VERIFY: model in the 3D view doesn’t change, model slice intersections are aligned with the volume
* Harden the transform on the volume
* VERIFY: the image doesn’t change too much

* BSpline registration with BRAINS (fixed: MRBrainTumor1 & moving: MRBrainTumor2)
* VERIFY: the resampled output image should look the same as the dynamically transformed moving volume
* Save the transform as tfm from file, load the transform from file, apply the transform to the moving image
* VERIFY: the resampled output image should look the same as the dynamically transformed moving volume
* Apply transform to the model
* VERIFY: model is deformed in the 3D view, aligned with the volume slices
* Harden transform to the model
* VERIFY: model in the 3D view doesn’t change, model slice intersections are aligned with the volume
* Insert linear transform between bspline and volume, move sliders
* VERIFY: volume deforms as it travels through the BSpline region
* Harden the transform on the volume
* VERIFY: the image doesn’t change too much

* Create a two markup list (each having 15 points), all but 3 in the same position
* Landwarp registration with Plastimatch with the markup lists, save the displacement field to file
* Load the displacement field
* VERIFY: the resampled output image should look the same as the dynamically transformed moving volume
* Apply the displacement field to the moving fiducials
* VERIFY: all the fiducials are now in the same position
* Harden the transform on the fiducials
* VERIFY: the fiducials don’t move
* Apply transform to the model
* VERIFY: model is deformed in the 3D view, aligned with the volume slices
* Harden transform to the model
* VERIFY: model in the 3D view doesn’t change, model slice intersections are aligned with the volume
* Harden the transform on the volume
* VERIFY: the image doesn’t change too much

* Load MRI head, create new linear transform, apply to the volume, move the sliders
* VERIFY: the volume moves in the slice viewer, the numbers change in the matrix
* Click Invert, Identity
* VERIFY: volume jumps to other side, to the center
* Connect to an OpenIGTLink server, apply a transform to a volume
* VERIFY: transform matrix values updated in transforms module, volume moves

Revision 22886  Directory Listing
Modified Mon Feb 17 02:19:54 2014 UTC (3 years, 7 months ago) by alexy
ENH: Added new vtkMRMLTransformNode attribute: readWriteAsTransformToParent

Revision 21785  Directory Listing
Modified Tue Mar 5 23:18:53 2013 UTC (4 years, 6 months ago) by jcfr
BUG: Fix ResampleScalarVectorDWIVolumeBSplineInterpolationTest

Based on discussion with module maintainer, the test failure was
due to the transition to ITKv4. There were other improvements to
the BSpline code.
See http://slicer-devel.65872.n3.nabble.com/Slicer-baselines-need-to-be-updated-due-to-ITKv4-integration-tp4027636p4027789.html

The update of the baseline has been done with the following command:
cp /home/jchris/Projects/Slicer-AHM-Superbuild-Debug/Slicer-build/Testing/Temporary/ResampleScalarVectorDWIVolumeBSplineInterpolationTest.nrrd /home/jchris/Projects/Slicer-AHM/Testing/Data/Input/MRHeadResampledBSplineInterpolationTest.nrrd

Revision 19181  Directory Listing
Modified Thu Feb 2 06:50:50 2012 UTC (5 years, 7 months ago) by jcfr
ENH: Rename "PolyDataToLabelmap" module into "ModelToLabelMap"

* Move input data into CLI specific directory

* Module name and module title are now consistent

See http://massmail.spl.harvard.edu/public-archives/slicer-devel/2012/007599.html

Revision 19175  Directory Listing
Modified Thu Feb 2 06:50:18 2012 UTC (5 years, 7 months ago) by jcfr
ENH: Rename "SparseFieldLevelSetContour" module into "MeshContourSegmentation", restore appropriate test.

* Restore compare test. The test is now failing probably because compare to
the baseline, the output model seems to contain additional information:
 - ActiveContourVertexIndices
 - SurfaceMeanCurvature
This difference can be observed after loading the data using Paraview 3.8.0

* Module name and module title are now consistent

See http://massmail.spl.harvard.edu/public-archives/slicer-devel/2012/007599.html

Revision 19108  Directory Listing
Modified Fri Jan 20 02:22:30 2012 UTC (5 years, 8 months ago) by finetjul
BUG: Don't use vtkMRMLScene::AddNodeNoNotify

Adding a node to the scene should always fire events. It's the observer's
role to decide whether it ignores the event or not.

If performance is an issue,
vtkMRMLScene::Start/EndState(vtkMRMLScene::BatchProcessState) can be
used to inform the scene observers that a lot of changes (node insertion, removals) is happening.

Closes #1633

Revision 17508  Directory Listing
Modified Mon Jul 18 20:17:13 2011 UTC (6 years, 2 months ago) by taylor
COMP: Move baseline data of all CLIs into a respective dedicated "Data/Baseline" subdirectory

* As a first step toward the modularization of Slicer, the data files (in that case Baseline) 
have been moved at the module level.

Revision 17384  Directory Listing
Modified Fri Jul 8 09:42:53 2011 UTC (6 years, 2 months ago) by jcfr
ENH: Move baseline data of "Cast" CLI into a dedicated "Data/Baseline" subdirectory

Revision 17374  Directory Listing
Modified Thu Jul 7 17:22:59 2011 UTC (6 years, 2 months ago) by jcfr
ENH: Move baseline data of "Add" CLI into a dedicated "Data/Baseline" subdirectory

Revision 17191  Directory Listing
Modified Thu Jun 23 01:39:37 2011 UTC (6 years, 3 months ago) by jcfr
STYLE: Move CMake commands to match new conventions

The next step in removing end-of-lines is to run through all the
CMakeLists.txt files and clean them up.

This also changes all the key words to lower
case. The primary reason for changing key words is that all documentation for
CMakeLists.txt now shows the key words as lower case. Even the printed
“Mastering CMake v5” uses lower case. I’ve come across this several
times in my class where students stumble over the fact that the
documentation about Cmake does not match the implementation in ITK.

I have a script (a wrapper around a vim macro) written that can make
these substituions reliably (Tested on the BRAINS tree, the Slicer3
tree, and the ITK tree without causing any errors).  More complete
documentation can be found in
ITK/Utilities/Maintenance/HowToCreateTheCMakeCaseConversion.txt

Revision 17087  Directory Listing
Modified Fri Jun 17 17:26:01 2011 UTC (6 years, 3 months ago) by lorensen
COMP: New baselines for ITKv4.


Revision 16677  Directory Listing
Modified Fri May 27 21:23:58 2011 UTC (6 years, 4 months ago) by jcfr
COMP: Rename LAUNCH_EXE into Slicer_LAUNCH_COMMAND

Revision 16585  Directory Listing
Modified Tue May 17 06:40:55 2011 UTC (6 years, 4 months ago) by jcfr
COMP: Replace '${Slicer_BINARY_DIR}/Slicer3' with ${Slicer_EXECUTABLE}

Revision 15847  Directory Listing
Modified Mon Jan 17 19:59:40 2011 UTC (6 years, 8 months ago) by lorensen
ENH: New baselines for ITKv4.

Revision 15773  Directory Listing
Modified Sat Jan 8 21:55:31 2011 UTC (6 years, 8 months ago) by jcfr
STYLE: Rename test Slicer3PythonSimpleNUMPYTest into SlicerPythonSimpleNUMPYTest

Revision 15431  Directory Listing
Modified Tue Dec 7 00:23:05 2010 UTC (6 years, 9 months ago) by jcfr
COMP: CLI and CLI/Testing uppdated to use CDash labels

Also simplify the code by using macro slicerMacroBuildCLI

Revision 15113  Directory Listing
Modified Fri Oct 8 03:44:00 2010 UTC (6 years, 11 months ago) by jcfr
COMP: Rename project Slicer3 into Slicer

Revision 15100  Directory Listing
Modified Fri Oct 8 03:40:06 2010 UTC (6 years, 11 months ago) by jcfr
COMP: Rename Slicer3_USE_NUMPY into Slicer_USE_NUMPY

Revision 14066  Directory Listing
Modified Wed Jul 7 18:14:46 2010 UTC (7 years, 2 months ago) by francois_budin
ENH:Test images for ResampleVolume2

Revision 13973  Directory Listing
Modified Mon Jun 28 18:01:43 2010 UTC (7 years, 2 months ago) by partyd
COMP: import sys.

Revision 13972  Directory Listing
Modified Mon Jun 28 17:37:11 2010 UTC (7 years, 2 months ago) by partyd
ENH: Attempt to redirect all output to stderr in an attempt to see the output when launching python with the slicer launcher.

Revision 13971  Directory Listing
Modified Mon Jun 28 17:33:26 2010 UTC (7 years, 2 months ago) by partyd
ENH: Check if PYTHON_EXECUTABLE is set before attempting to use it.

Revision 13943  Directory Listing
Modified Thu Jun 24 21:57:18 2010 UTC (7 years, 3 months ago) by partyd
ENH: Use the launcher to call the python interpreter so that the paths are set properly.

Revision 13938  Directory Listing
Modified Thu Jun 24 16:10:46 2010 UTC (7 years, 3 months ago) by partyd
BUG: Fix return type calls since we are not running from the slicer gui.

Revision 13937  Directory Listing
Modified Thu Jun 24 15:59:35 2010 UTC (7 years, 3 months ago) by partyd
ENH: properly rename the NUMPY test and launch it with python directly rather than through the slicer gui.

Revision 13934  Directory Listing
Modified Thu Jun 24 14:11:59 2010 UTC (7 years, 3 months ago) by partyd
ENH: Move SimpleNUMPYTest to a better location that isn't dependent on the gui being built.

Revision 13386  Directory Listing
Modified Mon May 17 17:24:58 2010 UTC (7 years, 4 months ago) by pkarasev
COMP: update the vtp data for SFLS mesh contour segmentation

Revision 13261  Directory Listing
Modified Wed May 5 23:19:24 2010 UTC (7 years, 4 months ago) by naucoin
BUG: use the updated contour points, new baseline

Revision 13258  Directory Listing
Modified Wed May 5 22:26:34 2010 UTC (7 years, 4 months ago) by naucoin
BUG: force xml poly data writer to write out 32 bit, and update the baseline test

Revision 13257  Directory Listing
Modified Wed May 5 22:06:41 2010 UTC (7 years, 4 months ago) by naucoin
BUG: always write out .vtp files using Id type of int 32, and new int 32 baseline for comparison

Revision 13161  Directory Listing
Modified Sun May 2 18:33:37 2010 UTC (7 years, 4 months ago) by pkarasev
BUG: baseline dataset SFLS

Revision 13160  Directory Listing
Modified Sun May 2 17:22:30 2010 UTC (7 years, 4 months ago) by pkarasev
BUG: test data set update: 'virtual colonoscopy' from Ron

Revision 13122  Directory Listing
Modified Fri Apr 30 16:49:07 2010 UTC (7 years, 4 months ago) by naucoin
BUG: add missing baseline output for the merge models test

Revision 13101  Directory Listing
Modified Thu Apr 29 22:14:48 2010 UTC (7 years, 4 months ago) by naucoin
BUG: pass in a test mrml file to the acpc test. The file does get over written when the test is run, but only the first node changes. The second node, vtkMRMLLinearTransformNode2, contains the expected output

Revision 13062  Directory Listing
Modified Thu Apr 29 14:37:51 2010 UTC (7 years, 4 months ago) by naucoin
BUG: adding missing test input files for ACPC/Realign test

Revision 13043  Directory Listing
Modified Thu Apr 29 01:43:10 2010 UTC (7 years, 4 months ago) by naucoin
BUG: adding missing test baseline images for the Cast module

Revision 12975  Directory Listing
Modified Wed Apr 28 18:14:04 2010 UTC (7 years, 4 months ago) by fedorov
ENH: adding data for the N4 test

Revision 12916  Directory Listing
Modified Sun Apr 25 21:22:52 2010 UTC (7 years, 5 months ago) by casey.goodlett
ENH: Add test for register images multi-res.

Revision 12900  Directory Listing
Modified Sat Apr 24 19:12:59 2010 UTC (7 years, 5 months ago) by fedorov
ENH: adding data for changetracker testing

Revision 12866  Directory Listing
Modified Thu Apr 22 06:22:47 2010 UTC (7 years, 5 months ago) by pkarasev
COMP: add test and reference data for SFLS CLI module . Remaining issue: CTest support for vtkXMLPolyData input ?


Revision 12818  Directory Listing
Modified Mon Apr 19 21:59:16 2010 UTC (7 years, 5 months ago) by ibanez
ENH: Adding baseline images for the Applications/CLI/Add module

Revision 12809  Directory Listing
Modified Mon Apr 19 20:42:35 2010 UTC (7 years, 5 months ago) by ibanez
ENH: Adding input images for testing Application/CLI modules with multiple pixel types.

Revision 12807  Directory Listing
Modified Mon Apr 19 20:30:50 2010 UTC (7 years, 5 months ago) by ibanez
ENH: Changing the mime-type of these file to make them binary.

Revision 12806  Directory Listing
Modified Mon Apr 19 20:29:04 2010 UTC (7 years, 5 months ago) by ibanez
ENH: Adding baseline images for the tests of the Application/CLI/Add.cxx module.

Revision 12805  Directory Listing
Modified Mon Apr 19 20:15:27 2010 UTC (7 years, 5 months ago) by ibanez
ENH: Adding a basic image in all the pixel types in order to provide exhaustive testing of CLI modules.

Revision 11508  Directory Listing
Modified Mon Jan 4 19:10:35 2010 UTC (7 years, 8 months ago) by ibanez
ENH: Removing .NoDartCoverage files and replacing them with the
     CTEST_CUSTOM_COVERAGE_EXCLUDE variable in the CTestCustom.cmake.in file.


Revision 11388  Directory Listing
Modified Sat Dec 26 17:02:46 2009 UTC (7 years, 9 months ago) by ibanez
ENH: Adding .NoDartCoverage file in order to exclude this Testing directory from the computation of code coverage.

Revision 10607  Directory Listing
Modified Thu Oct 8 20:30:56 2009 UTC (7 years, 11 months ago) by pieper
COMP: check in version of mrml file as written by the test so that svn does not detect a modified file

Revision 10595  Directory Listing
Modified Wed Oct 7 21:11:21 2009 UTC (7 years, 11 months ago) by pieper
BUG: fix the baseline test result volume to match the corrected output of the filter

Revision 10228  Directory Listing
Modified Wed Aug 12 19:50:51 2009 UTC (8 years, 1 month ago) by naucoin
BUG: new baseline image due to changes in PolyDataToLabelmap.cxx

Revision 10013  Directory Listing
Modified Thu Jul 23 22:15:27 2009 UTC (8 years, 2 months ago) by pieper
ENH: example scripts for interacting with MRML API

Revision 9708  Directory Listing
Modified Tue Jun 16 17:36:33 2009 UTC (8 years, 3 months ago) by fedorov
BUG: corrected command line

Slicer3 --launch RigidRegistration --fixedsmoothingfactor 0
--movingsmoothingfactor 0 --histogrambins 30 --spatialsamples 10000
--iterations 100,100,50,20 --learningrate 0.01,0.005,0.0005,0.0002
--translationscale 100 
~/projhome/data/RegistrationReproducibility/MRMeningioma0.nrrd
~/projhome/data/RegistrationReproducibility/MRMeningioma1.nrrd


Revision 9683  Directory Listing
Modified Thu Jun 11 13:45:24 2009 UTC (8 years, 3 months ago) by pieper
BUG: make input file match re-generated output file

Revision 9481  Directory Listing
Modified Wed May 13 22:23:53 2009 UTC (8 years, 4 months ago) by naucoin
ENH: Added multiply filter and test

Revision 9479  Directory Listing
Modified Wed May 13 21:39:43 2009 UTC (8 years, 4 months ago) by naucoin
ENH: Adding an image mask CLI and test

Revision 9472  Directory Listing
Modified Wed May 13 18:00:34 2009 UTC (8 years, 4 months ago) by naucoin
ENH: Cast volume CLI plus test

Revision 9359  Directory Listing
Modified Thu Apr 30 00:15:35 2009 UTC (8 years, 4 months ago) by fedorov
ENH: added ground truth testing transform for registering MRMeningioma1.nrrd
(moving) with MRMeningioma0.nrrd. This transform was obtained with the
following parameters using r9358, on george.bwh.harvard.edu, gcc 4.1.2, debug
mode.

 ./Slicer3 --launch RigidRegistration --fixedsmoothingfactor 0
 --movingsmoothingfactor 0 --histogrambins 30 --spatialsamples 10000
 --iterations 100,100,50,20 --learningrate 0.01,0.005,0.0005,0.0002
 --translationscale 100 --initialtransform
 ../Slicer3/Testing/Data/Input/MRMeningioma01.tfm --outputtransform
 ./transform.txt --resampledmovingfilename ./registered.nrrd
 ../Slicer3/Testing/Data/Input/MRMeningioma0.nrrd
 ../Slicer3/Testing/Data/Input/MRMeningioma1.nrrd


Revision 9267  Directory Listing
Modified Tue Apr 21 15:49:18 2009 UTC (8 years, 5 months ago) by taox
ENH: baseline results for module PolyDataToLabelmap. 

Revision 9266  Directory Listing
Modified Tue Apr 21 15:38:50 2009 UTC (8 years, 5 months ago) by taox
ENH: test dataset for module PolyDataToLabelmap. original dataset from OASIS database. 

Revision 8621  Directory Listing
Modified Wed Feb 11 19:44:42 2009 UTC (8 years, 7 months ago) by taox
ENH: testing data for DicomToNRRDConverter

Revision 8401  Directory Listing
Modified Fri Jan 16 16:46:37 2009 UTC (8 years, 8 months ago) by fedorov
ENH: Added rigid registration test and baseline image for regression
testing (meningioma data)

Revision 8400  Directory Listing
Modified Fri Jan 16 16:28:27 2009 UTC (8 years, 8 months ago) by fedorov
BUG: Incorrect order of test images

Revision 8392  Directory Listing
Modified Thu Jan 15 00:25:26 2009 UTC (8 years, 8 months ago) by fedorov
ENH: Input data for ChangeTracker testing (same as in the data
accompanying ChangeTracker tutorial materials)

Revision 8319  Directory Listing
Modified Thu Jan 8 16:20:11 2009 UTC (8 years, 8 months ago) by naucoin
ENH: baseline threshold output for testing threshold filter

Revision 8265  Directory Listing
Modified Mon Jan 5 17:47:49 2009 UTC (8 years, 8 months ago) by lorensen
ENH: new baselines for otsu filters.

Revision 8263  Directory Listing
Modified Sat Jan 3 20:37:43 2009 UTC (8 years, 8 months ago) by lorensen
ENH: new regression baselines.

Revision 8261  Directory Listing
Modified Sat Jan 3 19:41:56 2009 UTC (8 years, 8 months ago) by lorensen
ENH: New regression baselines.

Revision 8259  Directory Listing
Modified Sat Jan 3 16:41:02 2009 UTC (8 years, 8 months ago) by lorensen
ENH: baselines for new tests.

Revision 8258  Directory Listing
Modified Sat Jan 3 04:39:56 2009 UTC (8 years, 8 months ago) by lorensen
ENH: Regression images for new test.

Revision 8256  Directory Listing
Modified Fri Jan 2 20:38:17 2009 UTC (8 years, 8 months ago) by lorensen
ENH: data for regression test.

Revision 8255  Directory Listing
Modified Fri Jan 2 19:08:32 2009 UTC (8 years, 8 months ago) by lorensen
ENH: OtsuThresholdSegmentationTest is now a regression test.

Revision 8252  Directory Listing
Modified Fri Jan 2 18:40:48 2009 UTC (8 years, 8 months ago) by lorensen
ENH: baseline for  VotingBinaryHoleFillingImageFilterTest.

Revision 8248  Directory Listing
Modified Fri Jan 2 17:54:53 2009 UTC (8 years, 8 months ago) by lorensen
ENH: test data for ModelMakerTest.

Revision 8245  Directory Listing
Modified Fri Jan 2 15:51:20 2009 UTC (8 years, 8 months ago) by lorensen
ENH: New test data.

Revision 8243  Directory Listing
Modified Fri Jan 2 13:43:01 2009 UTC (8 years, 8 months ago) by lorensen
ENH: New regression test for CurvatureAnisotropicDiffusion.

Revision 8241  Directory Listing
Modified Fri Jan 2 13:31:13 2009 UTC (8 years, 8 months ago) by lorensen
ENH: New test data.

Revision 8240  Directory Listing
Modified Fri Jan 2 13:29:56 2009 UTC (8 years, 8 months ago) by lorensen
ENH: Regression images for new test.

Revision 8238  Directory Listing
Modified Thu Jan 1 21:26:26 2009 UTC (8 years, 8 months ago) by lorensen
ENH: new regression test.

Revision 8236  Directory Listing
Modified Thu Jan 1 20:56:51 2009 UTC (8 years, 8 months ago) by lorensen
ENH: new CT data for testing.

Revision 7990  Directory Listing
Modified Wed Nov 26 21:23:51 2008 UTC (8 years, 10 months ago) by lorensen
BUG: file should not have been committed.

Revision 7989  Directory Listing
Modified Wed Nov 26 21:23:01 2008 UTC (8 years, 10 months ago) by lorensen
ENH: baseline and input for new test.

Revision 7986  Directory Listing
Modified Wed Nov 26 21:01:29 2008 UTC (8 years, 10 months ago) by lorensen
ENH: new test baseline.

Revision 7011  Directory Listing
Modified Sat Jun 7 01:15:30 2008 UTC (9 years, 3 months ago) by ibanez
ENH: Adding standard QuaternionRigidTransform to be used as input in image registration tests.

Revision 7009  Directory Listing
Modified Fri Jun 6 23:31:28 2008 UTC (9 years, 3 months ago) by ibanez
ENH: Basic transforms used to perturbe the initialization of a registered image, 
     to register the images back and compare against a baseline.

Revision 7004  Directory Listing
Modified Fri Jun 6 16:31:49 2008 UTC (9 years, 3 months ago) by ibanez
ENH: Adding initial level of testing for BSplineDeformableRegistration  CLI module.

Revision 5123  Directory Listing
Modified Mon Dec 10 16:42:22 2007 UTC (9 years, 9 months ago) by pieper
ENH: extra test data for vector (color) images

Revision 4871  Directory Listing
Modified Mon Nov 19 00:30:28 2007 UTC (9 years, 10 months ago) by lorensen
ENH: Adding regression tests for CLI plugins.

Revision 1156  Directory Listing
Modified Thu Aug 31 20:27:56 2006 UTC (11 years ago) by pieper
ENH: reorg for clarity

Revision 1155  Directory Listing
Modified Thu Aug 31 20:16:32 2006 UTC (11 years ago) by pieper
ENH: test for image flip problem that occured on 32bit gcc builds

Revision 478  Directory Listing
Modified Fri Jun 2 21:13:01 2006 UTC (11 years, 3 months ago) by pieper
ENH: test for a big array

Revision 454  Directory Listing
Modified Thu Jun 1 22:01:41 2006 UTC (11 years, 3 months ago) by pieper
ENH: further testing

Revision 453  Directory Listing
Modified Thu Jun 1 21:44:13 2006 UTC (11 years, 3 months ago) by pieper
ENH: simple test script for large image volumes

Revision 384  Directory Listing
Modified Tue May 9 21:45:40 2006 UTC (11 years, 4 months ago) by pieper
BUG: cmake 2.4 requires cmake files in every directory (just 'touch'ed files like these suffice)

Revision 357  Directory Listing
Modified Tue May 2 16:00:35 2006 UTC (11 years, 4 months ago) by pieper
ENH: added a second widget for testing key bindings

Revision 356  Directory Listing
Modified Tue May 2 15:47:43 2006 UTC (11 years, 4 months ago) by pieper
ENH: new test script

Revision 4  Directory Listing
Added Mon Jan 30 21:20:40 2006 UTC (11 years, 7 months ago) by pieper
ENH: top level testing dir

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